Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0014200 | OGI:11004300 | 13/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:20344210-20347493 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaccccttaactacatatcttttggaaatcaaactagccggggatcgaaaaaatgctagggtgaaatatgattggtttattttcaataagatgatagactcaaatgctatgtgctaccaagactttgttgatgatattgcaaagtcatatccatgggggccaaatgaaaccgtcacaattggctatgtggatatggttcataaaatttctcatcatgtcacaacttaccaggatatgctagaaatgtttgaaaagtttgttgatatcaaggtgattccaatgattattcgtatacatggtatgaatgaaaatattgatgagttagaccacactcttgttaaagcaaacatatgtgttcctgatactccttctctggcaaccccatctcaagtggatttcagccaacctagcagcagcactctgccttctcatgtcctcgtgccatcagacacatacttaataaacccatttcctatggctgagcatgttggtgtggacgatgaatgcatatacttagataatgaggaggctgttgctggtcaagctgatgaaactagaggtgaaggggctgccaatgaagaatccgaggatgaatcttgggctacatctgaggatacatctgaggatgcatctaagggtgatggtgttgatgaatctgaggatgagtcaatggcattggatgggatgccagaaaatattcctagcgcaacttatgacaagaatgacccaccaatgatcgtaggaagcatatatcctaacattgatgaatttagattggcaatagcacaacatgcaataaaaaaggagtttgaatttaacattatccggagtgaatcagggcaatatactgcaaagtgtgctgctcaaggctgcaattggaggatccatgcatctgtggttgctgatggtgtcactatgatggtatgtatttaatttaaaacagcatgcattcttcaagtattgtatatgtattttattgtggtattgaatatctttatatttcaggtgaaaaccaatccttttccacatgaatgctcaagtacgagaagaagtgagactatcaaggctgcaagcaagttttggatttgtgagaaagtaaaggattggttgttggaggatgctagtgtgggagcgaaggaattgcaaagaagaatccatgaaacacataaggttaagatcaactacaaaagagtgcatgctggtagggagcttgctatcacgaagttgtatggtagttggagagagagttttgacatgttgtatagatacaaggcacaagttgagaaagcaagccctggcagttttttcatcattgaccatcacactgttcttgaagagataaaattcagaaggctattctttgccttgaaaccatgcattcatggtttccttacttgttgtaggccatatttggctataaacagtactttcttaacgggcaagtttaaggggcagctagcagttgcttgtgctgtagatggacataactggatgtatccagttgctttgggtatatttgactcagagtctgttgagaattggatgtggttcatgcaacaactaaaagatgcaattggcactccaagaggcttggctctttgtactgatgcagggaaggggatagatagtgcagtgcatgaggtaaattgctttattatgcaccaaattcattctattccgtctctaataaaaggcaaaatgagctaattctcctttctcctttcttgtaggtttttcgtaatgtagaacaccgggagtgcatgaagcacatggtcaccaacttcaaaaagaagttcactggcaagatatttgatgataacctttggcctgcagcatatgcatggagcccttacttctatgagaaacatatggcagccatggaagaagctaaaccaaaagcagtagcataccttaggaagtatcacaaaaggctatggagtaggagtcagttctctacagtttgcaaggttgattatgtgacaaataaccttgcagaaagcttcaataatttggtgaaagattggaaagcactacatttgtatgacttcttggagaggattcgacggtggttgttggtgaaatgggataagaggcaaagaataggtaattaagaaattcgaaggccacattctacctcatattgtcaaggaattgaatgaaaaaagtagagatttagatatggtggtcacaagaaatggagactttgaggcagaaattgaggttaaaggaggtagtgggtttagacatgttgtcaatttggaacacaaaacttgcacatgtagggaattccaagtttcggggaagccttgtatccatgctatagcattcatcacgtcaattagaggaaggcttgaagattatgttgatgattgctttagtgtgcatcgattcagggcagcatatgagaaattgatcccttcattgcctgacaagtcacaatggccacaagctgatcatgggttcttcttggcaccacccattctgaagaaatcagctgggagaccaagaactttgaggtacaaagattgcactgagaaaggaagcaaaaggagtaggagacacaaatgcccaatttgcaagagctatggccatcattggcataattgcaaagagggtgatccagagcaagtagcagcaatgcttactgaaaggtacatatttcttacaaattttcattttgtttctaataagccttatgacatatattttctcttgttgacagagggccaccaaagaagagaaggaagaaaactaatgaagtaacctcagagactagtatcatggctgctccaatagttacaccaataatgacatatcctcctaggttagccaatcttttttacttcattctatagtcagttaggtacataacaattcaattaggtacataacaattcatttttcacagtcaaagcattcatttcattgaggatagtaggacaaggaacaatagctcaagttcaagtagatcagttaggtaagtaattagatcaattatatcaatttgttggtattatgctgctctatgcgatatattcataactctcttttgtagatcaagatcacttactggctcaaaccaacctgagccatctaatatgattgtagccttgccatgtcttggagagcaaacacctccagttggaccgaaaaaagccaagagcaagacaaagggaaagccaccatgttctgttgttccaaacagcccagctatgggcacaaggagtaaaaatatgagccctgcaatgggcactaggagcaaaagaaagcttatggactaa
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| CDS seq | atggaccccttaactacatatcttttggaaatcaaactagccggggatcgaaaaaatgctagggtgaaatatgattggtttattttcaataagatgatagactcaaatgctatgtgctaccaagactttgttgatgatattgcaaagtcatatccatgggggccaaatgaaaccgtcacaattggctatgtggatatggttcataaaatttctcatcatgtcacaacttaccaggatatgctagaaatgtttgaaaagtttgttgatatcaaggtgattccaatgattattcgtatacatggtatgaatgaaaatattgatgagttagaccacactcttgttaaagcaaacatatgtgttcctgatactccttctctggcaaccccatctcaagtggatttcagccaacctagcagcagcactctgccttctcatgtcctcgtgccatcagacacatacttaataaacccatttcctatggctgagcatgttggtgtggacgatgaatgcatatacttagataatgaggaggctgttgctggtcaagctgatgaaactagagccttgccatgtcttggagagcaaacacctccagttggaccgaaaaaagccaagagcaagacaaagggaaagccaccatgttctgttgttccaaacagcccagctatgggcacaaggagtaaaaatatgagccctgcaatgggcactaggagcaaaagaaagcttatggactaa
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| Protein seq | MDPLTTYLLEIKLAGDRKNARVKYDWFIFNKMIDSNAMCYQDFVDDIAKSYPWGPNETVTIGYVDMVHKISHHVTTYQDMLEMFEKFVDIKVIPMIIRIHGMNENIDELDHTLVKANICVPDTPSLATPSQVDFSQPSSSTLPSHVLVPSDTYLINPFPMAEHVGVDDECIYLDNEEAVAGQADETRALPCLGEQTPPVGPKKAKSKTKGKPPCSVVPNSPAMGTRSKNMSPAMGTRSKRKLMD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0014200 | OsLiXu_11g0014200.01 | Chr11 | 20344210 | 20347493 | + | NAM | ||
| CDS seq | atggaccccttaactacatatcttttggaaatcaaactagccggggatcgaaaaaatgctagggtgaaatatgattggtttattttcaataagatgatagactcaaatgctatgtgctaccaagactttgttgatgatattgcaaagtcatatccatgggggccaaatgaaaccgtcacaattggctatgtggatatggttcataaaatttctcatcatgtcacaacttaccaggatatgctagaaatgtttgaaaagtttgttgatatcaaggtgattccaatgattattcgtatacatggtatgaatgaaaatattgatgagttagaccacactcttgttaaagcaaacatatgtgttcctgatactccttctctggcaaccccatctcaagtggatttcagccaacctagcagcagcactctgccttctcatgtcctcgtgccatcagacacatacttaataaacccatttcctatggctgagcatgttggtgtggacgatgaatgcatatacttagataatgaggaggctgttgctggtcaagctgatgaaactagagccttgccatgtcttggagagcaaacacctccagttggaccgaaaaaagccaagagcaagacaaagggaaagccaccatgttctgttgttccaaacagcccagctatgggcacaaggagtaaaaatatgagccctgcaatgggcactaggagcaaaagaaagcttatggactaa
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| Protein seq | MDPLTTYLLEIKLAGDRKNARVKYDWFIFNKMIDSNAMCYQDFVDDIAKSYPWGPNETVTIGYVDMVHKISHHVTTYQDMLEMFEKFVDIKVIPMIIRIHGMNENIDELDHTLVKANICVPDTPSLATPSQVDFSQPSSSTLPSHVLVPSDTYLINPFPMAEHVGVDDECIYLDNEEAVAGQADETRALPCLGEQTPPVGPKKAKSKTKGKPPCSVVPNSPAMGTRSKNMSPAMGTRSKRKLMD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0438400 | SBH | 1.454167 | 1.168950 | 3.248149 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0438400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0001730 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0001770 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0001750 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0041850 | SBH | 0.111848 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0012780 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0041120 | SBH | 0.191351 | 0.000000 | 1.405974 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0012750 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0041300 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0041390 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0012700 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G012560 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0012640 | RBH | 0.0 | 0.0 | 0.0 |
