Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0013720 | OGI:11049950 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:19720855-19727939 | ||||||||
| Gene Symbol | DEP, OsDEP | ||||||||||
| DNA seq | aagtaacaactttcgcaacaacaattttattattcctctttgctaaaaagagctacaaaaccgtcgacggatggcacaataatgcaacaatatgcccacatttacaaatttatttattttgccaccattccggattttccatttattatttgcattgttcttacatatgctaggtagctcgccatcaaagcactcctgacattgtctttgcgtaccttcttcagatctcactaaacgacttgatagtccggaaaccatgattctcagggagcggtgcatttcccgggcgaatggagattattacctcaaaacctgaaaaagaaaatgtcgggaaagaaaaatataatatgaaatcttgacccaaggaaacgaatgatagcatgaaatgattgaaatgatcacatgattaggaatggcacccagagaggtcgactggttaaagctaaagcatcttatccaccaaataaaagcatgaacattcccatgaatatttgaccagaactagtcattacctgcactttttgcagcaacagcttcttggaagacatcggtgataaataagatctgagcaggactgtccaccccaagtgattgcgaaatctcaaagtagctccttgtttctcttttgttactgcggtttatgcgagatggaatcataatttcactaccatttttcagtatatgcagagaaatagaaatggaacaagaaatcatacccggttgtggtgtcaaagaaaccacagaggtattgtcgcagatcaccataggccgtattgccaaataatagcctttgcgcctcccggctgccacttgagtatatgtagacctatttgcaggtatattatttgttatcatgtcatctaatacaccTttttttgtattttttgcaatggatgattcaaaaatttgaaattgatattgtttagcactatctagggtcaacgttcttgacccaagttggcagctagtaataactatagtaaaccatgaaaacatattaggagccatgaaaagtttaaagttcacacttccacacgaatttgactaaagagataccttcatgccactagcatgccagtgctttagcgcctcggggacatcatcgaaaacaactccttgcagttctttactttcaaaaccagtcctccatatgtggccctggaatttgcattaaaaatgctgaaatccatcaaagaaacaggaatatgcttgcagcaccgaaaaagaatgtggactaagctacctggagttgtttcaacgacgtaatcttcctgtctgctttaatcatcgattcaacattagcaactaatgcattgataacctcttctttgtcagcattgtcaggtggaattggaacagacccaacaattccatttttcaggtcttcttcaacctgaataatgaatgctaatatgttatatcttgcataaaacagagatgggcacattcacgtggcctagtggtaaaactcatggttctggtggtggggactccagccactttccactatggtggtaaaacagttaactacgtccacaaatagaaagttgaggaaccaaaattggtatggtaacttagatcaaatctaacaattcaaaacaaaataattttcacagggctaatcaaatagtatgacttaaataccatcgacaaatacttagatggtacaagcttgcagccttacaggatcaacagcttcatgggatgtgcaaaattgatttatcataacttacttggatgcgcaatagtttgatgtcctctttggtttcatcagaactatatgttgaagtcagatgctttcgcacattatcacgggcatagggaaacatcacatcagtcacaaatgatattggagtagttgttccctcaatgtcaagaacaacacaatgctgcaagagaacacaaaggttagctatttgtattccagaaacatattatatggatgagttgaccagatgtagcaaccacaaagttaagaaagtacacaaacaataacacctagtactcactgctgcaaaacggtacactataagatctaaaaaaatcatttagaaggtagattttgcaaatactcagaacaaagaacagacctttgatgatttggaatcagggcatccatttggaatactagagcttagaacactgcgtggtcttttggcactgtttattggaccatgctcaggagttgtccaatcaatacccaattgatagagcttgatggcagcatcgaaaaggtaatgatagcattcagcctgaaaagcacaggcatagcaattaagtaaatatatgtcatggcataaagtccaggaaccattatccctcaaaatgtgtgcatgaccacagttatatttagagtaaattgcacagttggtacatgaacttacaaggtggatgcgatttagtacatgcatatgtaaatcgctcatttcagtgcataaacttgtctaatacgtgcaaactagagccaaaacaatatgttgtaactaatttcactaagttgagcactgattaggatgttatgtaggctcacatgtcaatatgatgttacgtaaatatgcatatagtcaatcaaacatacaataagtcatgttaattatacataaagggagtatgcaatggatacgaaataatagaagaacaaggttaaattatttacacatacgacatctcataccctcacgtgtgcgcctgacattctataatcagacgaactcaacatgaatagtcacaagttttggactagcacgcacgctctagataagttcatgcaccataatgagtattttacaagtttgtgtactaaattgcacccacctaacaagtttatataccgccaaagcgccaacacaatatacccttatatttatcacaaaactattatcaaatagcaggcttgatataaatattattgaagtgcatctaacatatagtcatataattaatgtatacccacgacctaggtagtcttgaagatattgatgaacaagggcatagtgtaaggagattactatttgatggttgaaagagctgacaatctaaaatgaagaaataaacaaagtaaaaatgagaggttagaaaaacatacctgtgtcttggcattgatccaggaatcaccccatacataaattccatggttccgtacaaggactgcagttgccttagggtatgctgcaatctgttatatattttcacatcagttctctagatccatccaaaatattgtatttgttctttgttatttgttgttttggtcattaacatagtctccaatacacagttttgatcactacttttcaattgtatataaaaattatatatctgttaatatcatttctatgagtgacgagcttacattgttttgcgcattgtagtaagcttaagtttaaaggtttgactgcagtaatgtacataatccaaaatgacatattgagaatggaggtaatattgagaataacctcctcataatcaacatcaatttaataagttttgtaagttaaatcctaaatgacagatgaacgagatggttgtaacgattgcttcattgcctacaggttggccaatcccgttgttagaacaatatctattttatccacacgaagttatgagaacaacagactacaaatataatatttgtttttttgcgaagattgagaaactgaaactccaaagaaggacaatagtaacataccgcctcagccagtgagtcagtgagctcatactcataaggagtgttctcaattataggaaccaccaattcgtcacggtaaccgtggcctttaattcctttaatcatttccatatgtgtcatctgtaagatagaatagcagtatatggtcaaataaagatttccatatcacagtcactttagtggtggatctacgactaaaaaaaatcaatcaaatgagataatactatgactatcataagttctactgactgaaaaccctggccatatgcaaacagcaaatagtttctgctattagctttgcctactacaaacacaatgaacaaattaccaaccttattgaaatagtggatacatatgatattttggatttttctgagtttgctttcgaattaattagccaatagaatagtgttggaatagcactgatgtcttggatatgctaagcaatatgtggggatggtacattctagtatcatgacatcccgaccaatgtatgcatcgtgcacttctctaaatattggaatcaacagtgtaccaaatttagaaaatatgtacgacattattccaactggtcctgatagctgatgcatgtctgtgtgaaatcaataatcgatcaaatcttttaaaaaatgttcaccactctttttagtacatatgtaataatgtctgccatgaaatgaaaaacaaatggagcaaacataatctccaatttattgaatagtgcatcatctagaaggttagcacttaattgttaataccatggaagttcttgtaatggaaaagtaagtggaaatctaaaaatatgaacaattatccatttttcaatttgacacattagatcagacagaaaaatgtccataatgtggtacactacatgagaaatggtgtattttcttagtactaccacatttttgtaaacatcacagctaacttcatgagaaatataaagcagaactggaacattagctaagattcatggggaaaagagacaagtgggttcaccctaaactcttttgcaccaggatcaagcatggttgcaatgcaagtttccatcccatggctatgaataacagccccagctcctctcatcagataagcctgcaaaataccaatgaaaattagacaatttagactaaaacaagttgaagcagacaaattaagcaaaggatagcactgataaccttcatgaacagaggagcacagtcagtacattttggaggcttgtttggccatggctttgatacaggtgaggagagcaccttcccatctgctgacagcacatacatgtcctctgccaccatcctctccttctgcacacctgagaatgtgattaaaatttcttatatcgtttcttttggttcaaatcgcaaccttggtgctcacagaagttatggtcaactagtagaaaatcacgttctgtttagtgattcaggttttcagctttgtttcatccccatgattgatttgtggcgctagacaaacctctttccacatcaataggcatgtccaaaattgcaaaatcatgttttcatcaaaagaggataacattgtatctttatagcaggcctagataatgaaatgctcaaggtggtccaatactggacattacaactacgcacaggtttacacaagtatttttaaagtaaaaactgtaatagtaacacttcacatgcatcatgcactgatgctcaactgcattgagacataagctaataagcataatagttcacacttgaaagctagaaatattttaagttactagtttgtaaataaaattgatcttggctccttagcaacttatctttgtcatagaaattattaacataacaagaattttttttccttagtagtgtacaattaTtattgcatgttttattctagtctgactttgtacagaaatcacttggttttccagctcccataattcaaactgttaattcttcttggccagtttctgacttaacagtgaaatatctgagaacgttccagactattaaccacactcggataaataaagttgaccacagtgttcgaccgctactgcagtgcttgctaagccatttcacaaaaactgcaatcagtcaaacatacgaggggtgggccatatcaatatgaaataagcaactagcctcctaaatgcttaagtctattccaactgtctggacaagcagcctacataagaataataaagcaaccgtagttccaaTttttttagtaacaagcccaaatcaacacccaactaagcttatctgatacttaggccctgtttctttcagcttaagattattataatctagattattgagttagattactataagctagattgttataatctgtagtagaataagcggttagttgtttctttcctagattattagagcctagattattgggtttgcaaatctaaagagggagtggggtggcatggtgggtaattttttacccaataatctagaaaaagctcacctaaatgagcttatcagattataataagctgggctcctgattataataagctacttcaataagttgtctgtttctttcagcttactcccaataatctggattataataatgccaagctgaaagaaacagggccttacacccccacaatcttgtacgttaatacagatcacaataactaacatgagcagcagagcacaatcttcaactgtgcatgccaacgagcaatccccatatgcaaaatcacatcagtcagttcgtccagcaggagcagagcagtgcaagatagtacaggagagaggtggtccttcctgttcctgactccactttgtattgccacagagcaacacaacgcatgagtaaaccaaattaaacaatacaaagctcgactgctctagatacgtagtagtagcacaagagtgatgagacacaggcaagtcaatgccatcgaaattgttaatttaaccgaactccacgcagcagactacgttcctacccacccacccacccaccctcgtcgatcccggaataacatcccccgccgccgtggcaattcatcgaacaggtggagggagggtgtgaggctgaggaaggcggaggaggaggaggaggataccggagggggacatgacgatgagctgatcggcgagggggagcgccgggtcgttggccttgacggtgatgctgccccccgttccggtgacccacccttggccgtagaagtggcggcacagctccgccaccagctcccgcgcctccctcaccgcctctccctccaggtacgcctccgactccgtcgccgccgccccctccccccttccgccgccgcagcacgccatggctctcctccgccgccgccgccgccgccgggattcgagctcgccttgatgctttttgtggtgatggtttggttttttgtagtaggaagagt
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| CDS seq | atggcgtgctgcggcggcggaaggggggagggggcggcggcgacggagtcggaggcgtacctggagggagaggcggtgagggaggcgcgggagctggtggcggagctgtgccgccacttctacggccaagggtgggtcaccggaacggggggcagcatcaccgtcaaggccaacgacccggcgctccccctcgccgatcagctcatcgtcatgtccccctccggtgtgcagaaggagaggatggtggcagaggacatgtatgtgctgtcagcagatgggaaggtgctctcctcacctgtatcaaagccatggccaaacaagcctccaaaatgtactgactgtgctcctctgttcatgaaggcttatctgatgagaggagctggggctgttattcatagccatgggatggaaacttgcattgcaaccatgcttgatcctggtgcaaaagagtttaggatgacacatatggaaatgattaaaggaattaaaggccacggttaccgtgacgaattggtggttcctataattgagaacactccttatgagtatgagctcactgactcactggctgaggcgattgcagcataccctaaggcaactgcagtccttgtacggaaccatggaatttatgtatggggtgattcctggatcaatgccaagacacaggctgaatgctatcattaccttttcgatgctgccatcaagctctatcaattgggtattgattggacaactcctgagcatggtccaataaacagtgccaaaagaccacgcagtgttctaagctctagtattccaaatggatgccctgattccaaatcatcaaagcattgtgttgttcttgacattgagggaacaactactccaatatcatttgtgactgatgtgatgtttccctatgcccgtgataatgtgcgaaagcatctgacttcaacatatagttctgatgaaaccaaagaggacatcaaactattgcgcatccaagttgaagaagacctgaaaaatggaattgttgggtctgttccaattccacctgacaatgctgacaaagaagaggttatcaatgcattagttgctaatgttgaatcgatgattaaagcagacaggaagattacgtcgttgaaacaactccagggccacatatggaggactggttttgaaagtaaagaactgcaaggagttgttttcgatgatgtccccgaggcgctaaagcactggcatgctagtggcatgaaggtctacatatactcaagtggcagccgggaggcgcaaaggctattatttggcaatacggcctatggtgatctgcgacaatacctctgtggtttctttgacaccacaaccggtaacaaaagagaaacaaggagctactttgagatttcgcaatcacttggggtggacagtcctgctcagatcttatttatcaccgatgtcttccaagaagctgttgctgcaaaaagtgcaggttttgaggtaataatctccattcgcccgggaaatgcaccgctccctgagaatcatggtttccggactatcaagtcgtttagtgagatctga
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| Protein seq | MACCGGGRGEGAAATESEAYLEGEAVREARELVAELCRHFYGQGWVTGTGGSITVKANDPALPLADQLIVMSPSGVQKERMVAEDMYVLSADGKVLSSPVSKPWPNKPPKCTDCAPLFMKAYLMRGAGAVIHSHGMETCIATMLDPGAKEFRMTHMEMIKGIKGHGYRDELVVPIIENTPYEYELTDSLAEAIAAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLYQLGIDWTTPEHGPINSAKRPRSVLSSSIPNGCPDSKSSKHCVVLDIEGTTTPISFVTDVMFPYARDNVRKHLTSTYSSDETKEDIKLLRIQVEEDLKNGIVGSVPIPPDNADKEEVINALVANVESMIKADRKITSLKQLQGHIWRTGFESKELQGVVFDDVPEALKHWHASGMKVYIYSSGSREAQRLLFGNTAYGDLRQYLCGFFDTTTGNKRETRSYFEISQSLGVDSPAQILFITDVFQEAVAAKSAGFEVIISIRPGNAPLPENHGFRTIKSFSEI |
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| Function | Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [UniProtKB/Swiss-Prot:Q2R483] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0013720 | OsLiXu_11g0013720.01 | Chr11 | 19720855 | 19727939 | - | NAM | ||
| CDS seq | atggcgtgctgcggcggcggaaggggggagggggcggcggcgacggagtcggaggcgtacctggagggagaggcggtgagggaggcgcgggagctggtggcggagctgtgccgccacttctacggccaagggtgggtcaccggaacggggggcagcatcaccgtcaaggccaacgacccggcgctccccctcgccgatcagctcatcgtcatgtccccctccggtgtgcagaaggagaggatggtggcagaggacatgtatgtgctgtcagcagatgggaaggtgctctcctcacctgtatcaaagccatggccaaacaagcctccaaaatgtactgactgtgctcctctgttcatgaaggcttatctgatgagaggagctggggctgttattcatagccatgggatggaaacttgcattgcaaccatgcttgatcctggtgcaaaagagtttaggatgacacatatggaaatgattaaaggaattaaaggccacggttaccgtgacgaattggtggttcctataattgagaacactccttatgagtatgagctcactgactcactggctgaggcgattgcagcataccctaaggcaactgcagtccttgtacggaaccatggaatttatgtatggggtgattcctggatcaatgccaagacacaggctgaatgctatcattaccttttcgatgctgccatcaagctctatcaattgggtattgattggacaactcctgagcatggtccaataaacagtgccaaaagaccacgcagtgttctaagctctagtattccaaatggatgccctgattccaaatcatcaaagcattgtgttgttcttgacattgagggaacaactactccaatatcatttgtgactgatgtgatgtttccctatgcccgtgataatgtgcgaaagcatctgacttcaacatatagttctgatgaaaccaaagaggacatcaaactattgcgcatccaagttgaagaagacctgaaaaatggaattgttgggtctgttccaattccacctgacaatgctgacaaagaagaggttatcaatgcattagttgctaatgttgaatcgatgattaaagcagacaggaagattacgtcgttgaaacaactccagggccacatatggaggactggttttgaaagtaaagaactgcaaggagttgttttcgatgatgtccccgaggcgctaaagcactggcatgctagtggcatgaaggtctacatatactcaagtggcagccgggaggcgcaaaggctattatttggcaatacggcctatggtgatctgcgacaatacctctgtggtttctttgacaccacaaccggtaacaaaagagaaacaaggagctactttgagatttcgcaatcacttggggtggacagtcctgctcagatcttatttatcaccgatgtcttccaagaagctgttgctgcaaaaagtgcaggttttgaggtaataatctccattcgcccgggaaatgcaccgctccctgagaatcatggtttccggactatcaagtcgtttagtgagatctga
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| Protein seq | MACCGGGRGEGAAATESEAYLEGEAVREARELVAELCRHFYGQGWVTGTGGSITVKANDPALPLADQLIVMSPSGVQKERMVAEDMYVLSADGKVLSSPVSKPWPNKPPKCTDCAPLFMKAYLMRGAGAVIHSHGMETCIATMLDPGAKEFRMTHMEMIKGIKGHGYRDELVVPIIENTPYEYELTDSLAEAIAAYPKATAVLVRNHGIYVWGDSWINAKTQAECYHYLFDAAIKLYQLGIDWTTPEHGPINSAKRPRSVLSSSIPNGCPDSKSSKHCVVLDIEGTTTPISFVTDVMFPYARDNVRKHLTSTYSSDETKEDIKLLRIQVEEDLKNGIVGSVPIPPDNADKEEVINALVANVESMIKADRKITSLKQLQGHIWRTGFESKELQGVVFDDVPEALKHWHASGMKVYIYSSGSREAQRLLFGNTAYGDLRQYLCGFFDTTTGNKRETRSYFEISQSLGVDSPAQILFITDVFQEAVAAKSAGFEVIISIRPGNAPLPENHGFRTIKSFSEI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.689951 | 0.0 | 1.576160 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0484000 | RBH | 12.034796 | 9.173862 | 15.590256 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g29370 | RBH | 7.932733 | 6.015907 | 3.913081 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0484000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014090 | RBH | 4.071304 | 148.887390 | 13.136302 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014050 | RBH | 2.974006 | 176.423538 | 8.492675 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0014010 | RBH | 7.907776 | 123.911102 | 30.582642 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013820 | RBH | 1.023310 | 2.735143 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014100 | RBH | 32.714298 | 389.793945 | 54.623024 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0262300 | RBH | 9.639901 | 76.7744405 | 24.296415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0274500 | RBH | 12.387581 | 14.2711055 | 24.404595 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014180 | RBH | 1.456159 | 2.702478 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014230 | RBH | 2.401596 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0013870 | RBH | 16.326345 | 422.715179 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0070370 | RBH | 0.638549 | 0.0 | 2.773272 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014010 | RBH | 2.036443 | 74.087502 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013830 | RBH | 3.619730 | 9.098610 | 5.026084 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014050 | RBH | 5.462471 | 129.290421 | 17.688696 |
