Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0009540 | OGI:11025750 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:9013838-9020913 | ||||||||
| Gene Symbol | NLP5, OsNLP5, NLP5.1, NLP5.2, NLP5.3, NLP5.4, NLP5.5, OsNIN-like4 | ||||||||||
| DNA seq | ctatggacgtaacatggagcagctacctgacgaacttccgataggacacacaacatcttgcacctgaagcttcaagatacgcaacctggtggtgtcaagtatctcgaggcattcctggagatccgcatcgctcgctaaaatcacccagtcaccctcatcgtctttgtacttgagctgaaataggccaattgacagtttcagcctcttcgctatttcctcgagcagctgctcgtatttcatggatggtagcaatttgaaccttatggtgtcattcttgtagctcgcctttacgacgacggttttgttgctttcgttagctgactgactcttgatgctcttgaaagtttcgccgcttgatgtggagcaatctgtcatgctggaagaggacggtaggctttgtttggaattcttattgctcttgtcagtctcactctccattctgtattcttgtggcgcagaaaaagtatcccttgatgatggtttgtgctccagtctctccgtcctcgtgccagttttcgcaacacaagtcatttcccttgcaacatataaaccattcggcatatcctcacagaatgccccactcaatgttctggtagaatgtgagtttcgaaataattctccatcgtccatgtcaaaattaatttcaccattttgcttattctgcagtttgtggagtacatcttggcctgcatgttctcttcgatatgcatcacagtcaggttcgaagttcaaatgtggaagttcagattcaataggtaggggatcagaacctttgtgttcaacattcatcaatacaggctctatggaaggggaaacagatgaaacaaggcatccagtggaaggatcatatttcagcactccctcgactccatgtactgaacttatgacgttctggatcttctttagggatcggtttaccttctttatcttacgagatggccaccttgatattccatgttgtctgcatatccttttcagcgtagtaggacaaactgcaacgtaacagcaaggaataaaaaaaatcctgtaagttcctcttcctatgacacaattggattagtttgtttctacatttgtattagcagtagtgcttttcatacaaaacagaactaatttagtaggaattaattgaattctataagaataaatcagaaaaagatcatgagagtataaacaaattaccaccaatactctttgcagcatctttcaggctgccagagaagtactgctggaggacacttaagctaacactcttctctgttgagctgcgtcttttctctccgtcggatgcattgctacactttattaacttcaaaagaaataaatggagattagacaatattttaagtggttaaactacaactttgtgtaacatgaataacacaatacggaatttacaggatatatagaagtttctggttgtttagatgctgattataaattgaaaagattggttccgaggtaacttcttacagggcttaaatttctcaattccaaaggcgttgacaagtaagctattttaaacagtaattacttaagtagcattttagttgttctctgtaacatttgggacatatttattgaagtaaaaagcaagaaaataacaccagatgatgcaaagagatcagatctatacagttaaattgcaatgcagcacaagaaaatggacaatgcttaatctgtaaggaactattcaaacaatttactgaaaaaactatcctgcagagttatcacttccaattgttcatgtctgaatgactaaagcacacaaagaaaaacagatcacacgacagataaGagaggatgaaagcacatagtgagaatgttgaggatgaaacaaccttgttagtactttttgtatctgatagttgttcatcaatgccctctatctgatattccaaaggcgtatttgtttttgtttcattcgatacatcaatttctcggcctgaataaataaggttaacaggtgaagggcatcttgttcctgatcgattttcatttgatggctttcttgtaacatcttccttcaactcagcatctgaaacagttctcagacttttgcatactctccgcatggtcacagatatgctgtcaagtaagagctgttgttctccaccacctttgcacaagactggaagAaaaaactcagcacatagtcatcatttttggtgtatgtgctccgcagcctaattgcaacagcagcatgaagaccaaatttacgggcatgattgacaagtggataagcgtgcatatcataatccttcacatcagatgagaagaagggattatttgataaatatgcatttccagcgacaccttgtcctttctcaagggggtgttcagcacagacttggacaaaatcacgcattctcgtgtcattgacataacatgcagattcctctatgcaaagcacttctttgttccttttaccaaaatttgcaccatattctactgacacaagcacatctcttttggagcaaactggaatccatgcaagtgccaaaggtagcaagtgtgcttgacaaacagcttgcagaacatcgaatatttccatcaatgctaatttctggtcccttgaatagctctgcaagatcaagtaaagcaagaaaatgttgaattaatgagctctccatgtgcactgactgtgtagtagattggtacctgagaatgtctccatgcattgacagtgcttaactgaacagactgcaagattacaatgtcactattaagctcagaggctaattcaatcatgaaatgaactttataacaaaatgttctagaacaaattacaaccatatatgcacgctcggatggaaacaattatgagcaccctcaagtgaaaaaaagtagccatagcaactctacggtgaaaaaacaagccataactctggagagttttaagcatatttgagcaaaagtcaaaccttgtaccatgcatagaaattagaatagaaactaataatattggtgataagagcaAATaataattgatattaactatataaataactcaaaaataaagctaaatgtctcatagctgaaccatccacataataaaagaaagcattttaagtaatctagttgatgagtgcacagagcacaccaatagttcggatgtaccaactaccaagtaaaactaattcctgattagacaaacttggtacctatttatgcttccaatcattcttcttgctccagtacatgatattgatccgacttagtgaaacacatagatttggaatgagaaactggaaggcaaacatatgacctacagtacttaattctttgaagaggtacttagcagtattgcattgcaattgggcgtaacgttgggcagcacaaaggaggaacaatgggttattgaaggcctggaacaaccaaagtgtgaaatgtatattggtagcatcaaatccaaggacaaagagcagactagggagggatcagtacaggagagtgctgattaatcctcctaggatagtacaaaccttgtatcctcaaagacgaggaaactatagattattttttctcgagatagaaaatacctttatggtctctttaagaaaaagaccagatgtagtctgtgtgaaaccaagggtaggagaaataggaattcacctgaagttaatcatttgaaaggcctcatcagaaattatagaactctacaaatttagtcgcaggagAaaaaaaataagtttctggttaagagagctcaagaacaaggtattctaagtcgcttcacgtgatatttatgtaatgagtccttggaaattttacaatatgctgatgacactattttctcattggatgatagtttgttagagtctagaaatgtgatatttatcatttgtttgtttgagcaaaacagtgtattaagattaattctcatcagagtgcatgtattgttttacagaggcgaaaactacaggatgattatgctctgactttcacctgtcagaagggaatattgccatttaaatatttgggtatccccattcataacaaaagaaataaaggaacagtggtttgaaaggggtagaggaaaaggttgaaaagaaattaaacaattagcagggtaagaagttgccaattggtggcaggttagttttacttgattcatgtattagtaatgttccttcttatatgatttcactttttagcattctgaaaggtgtgttgaaggtcccttgcAaaaaaaaatgatgtttttagatctaggcttttatggcaagaagatacaagaaattaccgtattgtaaagtagccagtggtttgtcaccaaaaaacataatgtggactaggcatacttgatttatacctcatgaatatctgccttttatcgaagtggctatggaaattggagaaccatggaggaccttggcaggaattactaaggtctaagcattcaggcaaaaattcctccatagctattgaaaccaaaacagtcagattcaaatttctgcgcaggattgatagttgtcaaagacattttgttatcattctgcaataaaataattggtaacagagaacatgcacatttctcggatgatgtttggctgggagatagctctttggcaaaatagtttactaggctttatgatctcacttttagtcaaaaagtttcagtggctaaagtttttgaggtgttagccattgcattcatttcagaaggagatcttgtagatggaactgtgaaattacggctacttaaagcaagatgtggatacatatgcatctactgatgctctagaaagacaaaaggagattaacaaaggctatgtatatggccgtctttattctttacatctgctgggagactaagcaaccagccttagaggaaaaaaaaactcgtggctgctgtgcagaaatattttgactaaagataactcatgttagaagagttcccagaattgcaagttcggtgagtgtcctgagaaacattttgaaaatgtgtgctagcaaagttcatggtcagttgagcatacatcatgctagatcacctacctcaattggggatatttgggattggatggattgcccggtttccaaattccaactagttctggatgattgggggtggcttgtgtttgtgggtgatataaaggacaagaaactcagcttgtcttcccgactgaccctaccaagatcatgtatgaaattcattactgttgatttctgggctattttgtagaaaaaaaatagtgcgcagagcagtaagcgggatcagagaaagtaagtgcctaggcattgactgaaattgtgtttgtaaggtgtccatctgatgttagtcattctttctgtgctgtgtgttcaagtcatgtgtgccctttgatgaaaAGagatatcactctgttagaccgtctaacacaatatcattttaatttcctgcatgaattcttatttcctgatcatttctattaatagaaaaaaggggcgatgaatggtgaagaaatggtttcagtagtaacAaaaaaattcccatcagaaaaactgaatctgcttagttcgtcagcatgaatcaacagaaagaattgttccaactttcaaaagcaaaacctgtgtctatctaacaaaagttatttattccatacaagaagttagataaaaaggtagttgcaaaatctgtacatatctaacagcacgacttcataaggtctagaacaactttcagagctatcactactcactagagctatcagcctatcagtgacttatagatatgcttataccacataggcttgctatggatgttttgaagacaaacaaggacctcaagttgatcaaggtaagcaaattattcaaatttccctataaaacaaatgaaaaatgttgaaacatttaatttgaatgtttatcatgcgttactctgaaggcatagtgaaaatggataaaaacaaattatgggaacagttcaattctgaaaaggagaacaatttatagcaaggcaaatacaagtactaacctgcagagcattcgaaacattgaccatctctaagcaaaagttatccttctctcgtgtcattactacttctaacaccgcacagcaagacccaccacttgagttgaaaaccggcatcgcaagggatccacggacctcgtggcgcctagcataatcaaccctcaaatactccgagccatgatagtacatcacattcgacgtccactctggcatgccggacatgaaaacccggccgggcaatccggggaacaggccgggtccttcttcagccgagaatgtgaactgcctggagacttccctgtatcccgtaagcttctgatcgagcaagaacggctggtcagaggtagtcagcacatgctgctccccattcctcacaggcatccagacctgcacaaggatcgcttcgccacccgacgcctctttgagcatcgcaagcgccctgagcatcctctccgtcagtgtgacgccgtcgaacggcttcgggacagagccaattcccgcggccaccggctcacctgaagctaatccggcggcgcaatcacctcttcttgttgttgtaccctccttagtgatggaaacatcagaatcatcttgcctagaattagaacccacaggagtcgagacgtgcagcaatcgttcttgtgatggtgggaaacaggtaagagctgagaagatgctgtcggctaccgatgaacccgcgacgaggtcggtgtagctgtcgaggccatcgagcgctgatgacagcatgagcatgtccatgtccggcaccggatccccatccggcgtcccacctccatccatcttctcaatcctcacagcttaattacactcttcctcagcacccaaaataaatAaaaaaaatcaaaacttcttttgcccaaactacgacgaggcgctgcaccacgatcaaagaaaccggatcaaaataggtaatttggaggggaGgggggaagggaagaaatctccgatcaacgccataccggaggatgggaaagcggataccttcagcttcgattggagcccagatggaggtcggctctctcctctgctctgctctgctcgccggccggccgctcgccgccggcgGTGAggaggaggagaaaaggaaatggaataggga
More
|
||||||||||
| CDS seq | atggatggaggtgggacgccggatggggatccggtgccggacatggacatgctcatgctgtcatcagcgctcgatggcctcgacagctacaccgacctcgtcgcgggttcatcggtagccgacagcatcttctcagctcttacctgtttcccaccatcacaagaacgattgctgcacgtctcgactcctgtgggttctaattctaggcaagatgattctgatgtttccatcactaaggagggtacaacaacaagaagaggtgattgcgccgccggattagcttcaggtgagccggtggccgcgggaattggctctgtcccgaagccgttcgacggcgtcacactgacggagaggatgctcagggcgcttgcgatgctcaaagaggcgtcgggtggcgaagcgatccttgtgcaggtctggatgcctgtgaggaatggggagcagcatgtgctgactacctctgaccagccgttcttgctcgatcagaagcttacgggatacagggaagtctccaggcagttcacattctcggctgaagaaggacccggcctgttccccggattgcccggccgggttttcatgtccggcatgccagagtggacgtcgaatgtgatgtactatcatggctcggagtatttgagggttgattatgctaggcgccacgaggtccgtggatcccttgcgatgccggttttcaactcaagtggtgggtcttgctgtgcggtgttagaagtagtaatgacacgagagaaggataacttttgcttagagatggtcaatgtttcgaatgctctgcagagttctataatttctgatgaggcctttcaaatgattaacttcagtgacattgtaatcttgcagtctgttcagttaagcactgtcaatgcatggagacattctcagagctattcaagggaccagaaattagcattgatggaaatattcgatgttctgcaagctgtttgtcaagcacacttgctacctttggcacttgcatggattccagtttgctccaaaagagatgtgcttgtgtcagtagaatatggtgcaaattttggtaaaaggaacaaagaagtgctttgcatagaggaatctgcatgttatgtcaatgacacgagaatgcgtgattttgtccaagtctgtgctgaacacccccttgagaaaggacaaggtgtcgctggaaatgcatatttatcaaataatcccttcttctcatctgatgtgaaggattatgatatgcacgcttatccacttgtcaatcatgccctcttgtgcaaaggtggtggagaacaacagctcttacttgacagcatatctgtgaccatgcggagattaataaagtgtagcaatgcatccgacggagagaaaagacgcagctcaacagagaagagtgttagcttaagtgtcctccagcagtacttctctggcagcctgaaagatgctgcaaagagtattggtgtttgtcctactacgctgaaaaggatatgcagacaacatggaatatcaaggtggccatctcgtaagataaagaaggtaaaccgatccctaaagaagatccagaacgtcataagttcagtacatggagtcgagggagtgctgaaatatgatccttccactggatgccttgtttcatctgtttccccttccatagagcctgtattgatgaatgttgaacacaaaggttctgatcccctacctattgaatctgaacttccacatttgaacttcgaacctgactgtgatgcatatcgaagagaacatgcaggccaagatgtactccacaaactgcagaataagcaaaatggtgaaattaattttgacatggacgatggagaattatttcgaaactcacattctaccagaacattgagtggggcattctgtgaggatatgccgaatggtttatatgttgcaagggaaatgacttgtgttgcgaaaactggcacgaggacggagagactggagcacaaaccatcatcaagggatactttttctgcgccacaagaatacagaatggagagtgagactgacaagagcaataagaattccaaacaaagcctaccgtcctcttccagcatgacagattgctccacatcaagcggcgaaactttcaagagcatcaagagtcagtcagctaacgaaagcaacaaaaccgtcgtcgtaaaggcgagctacaagaatgacaccataaggttcaaattgctaccatccatgaaatacgagcagctgctcgaggaaatagcgaagaggctgaaactgtcaattggcctatttcagctcaagtacaaagacgatgagggtgactgggtgattttagcgagcgatgcggatctccaggaatgcctcgagatacttgacaccaccaggttgcgtatcttgaagcttcaggtgcaagatgttgtgtgtcctatcggaagttcgtcaggtagctgctccatgttacgtccatag
More
|
||||||||||
| Protein seq | MDGGGTPDGDPVPDMDMLMLSSALDGLDSYTDLVAGSSVADSIFSALTCFPPSQERLLHVSTPVGSNSRQDDSDVSITKEGTTTRRGDCAAGLASGEPVAAGIGSVPKPFDGVTLTERMLRALAMLKEASGGEAILVQVWMPVRNGEQHVLTTSDQPFLLDQKLTGYREVSRQFTFSAEEGPGLFPGLPGRVFMSGMPEWTSNVMYYHGSEYLRVDYARRHEVRGSLAMPVFNSSGGSCCAVLEVVMTREKDNFCLEMVNVSNALQSSIISDEAFQMINFSDIVILQSVQLSTVNAWRHSQSYSRDQKLALMEIFDVLQAVCQAHLLPLALAWIPVCSKRDVLVSVEYGANFGKRNKEVLCIEESACYVNDTRMRDFVQVCAEHPLEKGQGVAGNAYLSNNPFFSSDVKDYDMHAYPLVNHALLCKGGGEQQLLLDSISVTMRRLIKCSNASDGEKRRSSTEKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKVNRSLKKIQNVISSVHGVEGVLKYDPSTGCLVSSVSPSIEPVLMNVEHKGSDPLPIESELPHLNFEPDCDAYRREHAGQDVLHKLQNKQNGEINFDMDDGELFRNSHSTRTLSGAFCEDMPNGLYVAREMTCVAKTGTRTERLEHKPSSRDTFSAPQEYRMESETDKSNKNSKQSLPSSSSMTDCSTSSGETFKSIKSQSANESNKTVVVKASYKNDTIRFKLLPSMKYEQLLEEIAKRLKLSIGLFQLKYKDDEGDWVILASDADLQECLEILDTTRLRILKLQVQDVVCPIGSSSGSCSMLRP |
||||||||||
| Function | Protein NLP2 [UniProtKB/Swiss-Prot:Q0JC27] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0009540 | OsLiXu_11g0009540.04 | Chr11 | 9018526 | 9020913 | - | NAM | ||
| CDS seq | atggatggaggtgggacgccggatggggatccggtgccggacatggacatgctcatgctgtcatcagcgctcgatggcctcgacagctacaccgacctcgtcgcgggttcatcggtagccgacagcatcttctcagctcttacctgtttcccaccatcacaagaacgattgctgcacgtctcgactcctgtgggttctaattctaggcaagatgattctgatgtttccatcactaaggagggtacaacaacaagaagaggtgattgcgccgccggattagcttcaggtgagccggtggccgcgggaattggctctgtcccgaagccgttcgacggcgtcacactgacggagaggatgctcagggcgcttgcgatgctcaaagaggcgtcgggtggcgaagcgatccttgtgcaggtctggatgcctgtgaggaatggggagcagcatgtgctgactacctctgaccagccgttcttgctcgatcagaagcttacgggatacagggaagtctccaggcagttcacattctcggctgaagaaggacccggcctgttccccggattgcccggccgggttttcatgtccggcatgccagagtggacgtcgaatgtgatgtactatcatggctcggagtatttgagggttgattatgctaggcgccacgaggtccgtggatcccttgcgatgccggttttcaactcaagtggtgggtcttgctgtgcggtgttagaagtagtaatgacacgagagaaggataacttttgcttagagatggtcaatgtttcgaatgctctgcagggcacacatgacttgaacacacagcacagaaagaatgactaa
More
|
|||||||
| Protein seq | MDGGGTPDGDPVPDMDMLMLSSALDGLDSYTDLVAGSSVADSIFSALTCFPPSQERLLHVSTPVGSNSRQDDSDVSITKEGTTTRRGDCAAGLASGEPVAAGIGSVPKPFDGVTLTERMLRALAMLKEASGGEAILVQVWMPVRNGEQHVLTTSDQPFLLDQKLTGYREVSRQFTFSAEEGPGLFPGLPGRVFMSGMPEWTSNVMYYHGSEYLRVDYARRHEVRGSLAMPVFNSSGGSCCAVLEVVMTREKDNFCLEMVNVSNALQGTHDLNTQHRKND
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0009540 | OsLiXu_11g0009540.01 | Chr11 | 9013838 | 9020913 | - | NAM | ||
| CDS seq | atggatggaggtgggacgccggatggggatccggtgccggacatggacatgctcatgctgtcatcagcgctcgatggcctcgacagctacaccgacctcgtcgcgggttcatcggtagccgacagcatcttctcagctcttacctgtttcccaccatcacaagaacgattgctgcacgtctcgactcctgtgggttctaattctaggcaagatgattctgatgtttccatcactaaggagggtacaacaacaagaagaggtgattgcgccgccggattagcttcaggtgagccggtggccgcgggaattggctctgtcccgaagccgttcgacggcgtcacactgacggagaggatgctcagggcgcttgcgatgctcaaagaggcgtcgggtggcgaagcgatccttgtgcaggtctggatgcctgtgaggaatggggagcagcatgtgctgactacctctgaccagccgttcttgctcgatcagaagcttacgggatacagggaagtctccaggcagttcacattctcggctgaagaaggacccggcctgttccccggattgcccggccgggttttcatgtccggcatgccagagtggacgtcgaatgtgatgtactatcatggctcggagtatttgagggttgattatgctaggcgccacgaggtccgtggatcccttgcgatgccggttttcaactcaagtggtgggtcttgctgtgcggtgttagaagtagtaatgacacgagagaaggataacttttgcttagagatggtcaatgtttcgaatgctctgcagtctgttcagttaagcactgtcaatgcatggagacattctcagagctattcaagggaccagaaattagcattgatggaaatattcgatgttctgcaagctgtttgtcaagcacacttgctacctttggcacttgcatggattccagtttgctccaaaagagatgtgcttgtgtcagtagaatatggtgcaaattttggtaaaaggaacaaagaagtgctttgcatagaggaatctgcatgttatgtcaatgacacgagaatgcgtgattttgtccaagtctgtgctgaacacccccttgagaaaggacaaggtgtcgctggaaatgcatatttatcaaataatcccttcttctcatctgatgtgaaggattatgatatgcacgcttatccacttgtcaatcatgccctcttgtgcaaaggtggtggagaacaacagctcttacttgacagcatatctgtgaccatgcggagattaataaagtgtagcaatgcatccgacggagagaaaagacgcagctcaacagagaagagtgttagcttaagtgtcctccagcagtacttctctggcagcctgaaagatgctgcaaagagtattggtgtttgtcctactacgctgaaaaggatatgcagacaacatggaatatcaaggtggccatctcgtaagataaagaaggtaaaccgatccctaaagaagatccagaacgtcataagttcagtacatggagtcgagggagtgctgaaatatgatccttccactggatgccttgtttcatctgtttccccttccatagagcctgtattgatgaatgttgaacacaaaggttctgatcccctacctattgaatctgaacttccacatttgaacttcgaacctgactgtgatgcatatcgaagagaacatgcaggccaagatgtactccacaaactgcagaataagcaaaatggtgaaattaattttgacatggacgatggagaattatttcgaaactcacattctaccagaacattgagtggggcattctgtgaggatatgccgaatggtttatatgttgcaagggaaatgacttgtgttgcgaaaactggcacgaggacggagagactggagcacaaaccatcatcaagggatactttttctgcgccacaagaatacagaatggagagtgagactgacaagagcaataagaattccaaacaaagcctaccgtcctcttccagcatgacagattgctccacatcaagcggcgaaactttcaagagcatcaagagtcagtcagctaacgaaagcaacaaaaccgtcgtcgtaaaggcgagctacaagaatgacaccataaggttcaaattgctaccatccatgaaatacgagcagctgctcgaggaaatagcgaagaggctgaaactgtcaattggcctatttcagctcaagtacaaagacgatgagggtgactgggtgattttagcgagcgatgcggatctccaggaatgcctcgagatacttgacaccaccaggttgcgtatcttgaagcttcaggtgcaagatgttgtgtgtcctatcggaagttcgtcaggtagctgctccatgttacgtccatag
More
|
|||||||
| Protein seq | MDGGGTPDGDPVPDMDMLMLSSALDGLDSYTDLVAGSSVADSIFSALTCFPPSQERLLHVSTPVGSNSRQDDSDVSITKEGTTTRRGDCAAGLASGEPVAAGIGSVPKPFDGVTLTERMLRALAMLKEASGGEAILVQVWMPVRNGEQHVLTTSDQPFLLDQKLTGYREVSRQFTFSAEEGPGLFPGLPGRVFMSGMPEWTSNVMYYHGSEYLRVDYARRHEVRGSLAMPVFNSSGGSCCAVLEVVMTREKDNFCLEMVNVSNALQSVQLSTVNAWRHSQSYSRDQKLALMEIFDVLQAVCQAHLLPLALAWIPVCSKRDVLVSVEYGANFGKRNKEVLCIEESACYVNDTRMRDFVQVCAEHPLEKGQGVAGNAYLSNNPFFSSDVKDYDMHAYPLVNHALLCKGGGEQQLLLDSISVTMRRLIKCSNASDGEKRRSSTEKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKVNRSLKKIQNVISSVHGVEGVLKYDPSTGCLVSSVSPSIEPVLMNVEHKGSDPLPIESELPHLNFEPDCDAYRREHAGQDVLHKLQNKQNGEINFDMDDGELFRNSHSTRTLSGAFCEDMPNGLYVAREMTCVAKTGTRTERLEHKPSSRDTFSAPQEYRMESETDKSNKNSKQSLPSSSSMTDCSTSSGETFKSIKSQSANESNKTVVVKASYKNDTIRFKLLPSMKYEQLLEEIAKRLKLSIGLFQLKYKDDEGDWVILASDADLQECLEILDTTRLRILKLQVQDVVCPIGSSSGSCSMLRP
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0009540 | OsLiXu_11g0009540.03 | Chr11 | 9013838 | 9020913 | - | NAM | ||
| CDS seq | atggatggaggtgggacgccggatggggatccggtgccggacatggacatgctcatgctgtcatcagcgctcgatggcctcgacagctacaccgacctcgtcgcgggttcatcggtagccgacagcatcttctcagctcttacctgtttcccaccatcacaagaacgattgctgcacgtctcgactcctgtgggttctaattctaggcaagatgattctgatgtttccatcactaaggagggtacaacaacaagaagaggtgattgcgccgccggattagcttcaggtgagccggtggccgcgggaattggctctgtcccgaagccgttcgacggcgtcacactgacggagaggatgctcagggcgcttgcgatgctcaaagaggcgtcgggtggcgaagcgatccttgtgcaggtctggatgcctgtgaggaatggggagcagcatgtgctgactacctctgaccagccgttcttgctcgatcagaagcttacgggatacagggaagtctccaggcagttcacattctcggctgaagaaggacccggcctgttccccggattgcccggccgggttttcatgtccggcatgccagagtggacgtcgaatgtgatgtactatcatggctcggagtatttgagggttgattatgctaggcgccacgaggtccgtggatcccttgcgatgccggttttcaactcaagtggtgggtcttgctgtgcggtgttagaagtagtaatgacacgagagaaggataacttttgcttagagatggtcaatgtttcgaatgctctgcagagttctataatttctgatgaggcctttcaaatgattaacttcagtgacattgtaatcttgcagtctgttcagttaagcactgtcaatgcatggagacattctcagagctattcaagggaccagaaattagcattgatggaaatattcgatgttctgcaagctgtttgtcaagcacacttgctacctttggcacttgcatggattccagtttgctccaaaagagatgtgcttgtgtcagtagaatatggtgcaaattttggtaaaaggaacaaagaagtgctttgcatagaggaatctgcatgttatgtcaatgacacgagaatgcgtgattttgtccaagtctgtgctgaacacccccttgagaaaggacaaggtgtcgctggaaatgcatatttatcaaataatcccttcttctcatctgatgtgaaggattatgatatgcacgcttatccacttgtcaatcatgccctcttgtgcaaaggtggtggagaacaacagctcttacttgacagcatatctgtgaccatgcggagattaataaagtgtagcaatgcatccgacggagagaaaagacgcagctcaacagagaagagtgttagcttaagtgtcctccagcagtacttctctggcagcctgaaagatgctgcaaagagtattggtgtttgtcctactacgctgaaaaggatatgcagacaacatggaatatcaaggtggccatctcgtaagataaagaaggtaaaccgatccctaaagaagatccagaacgtcataagttcagtacatggagtcgagggagtgctgaaatatgatccttccactggatgccttgtttcatctgtttccccttccatagagcctgtattgatgaatgttgaacacaaaggttctgatcccctacctattgaatctgaacttccacatttgaacttcgaacctgactgtgatgcatatcgaagagaacatgcaggccaagatgtactccacaaactgcagaataagcaaaatggtgaaattaattttgacatggacgatggagaattatttcgaaactcacattctaccagaacattgagtggggcattctgtgaggatatgccgaatggtttatatgttgcaagggaaatgacttgtgttgcgaaaactggcacgaggacggagagactggagcacaaaccatcatcaagggatactttttctgcgccacaagaatacagaatggagagtgagactgacaagagcaataagaattccaaacaaagcctaccgtcctcttccagcatgacagattgctccacatcaagcggcgaaactttcaagagcatcaagagtcagtcagctaacgaaagcaacaaaaccgtcgtcgtaaaggcgagctacaagaatgacaccataaggttcaaattgctaccatccatgaaatacgagcagctgctcgaggaaatagcgaagaggctgaaactgtcaattggcctatttcagctcaagtacaaagacgatgagggtgactgggtgattttagcgagcgatgcggatctccaggaatgcctcgagatacttgacaccaccaggttgcgtatcttgaagcttcaggtgcaagatgttgtgtgtcctatcggaagttcgtcaggtagctgctccatgttacgtccatag
More
|
|||||||
| Protein seq | MDGGGTPDGDPVPDMDMLMLSSALDGLDSYTDLVAGSSVADSIFSALTCFPPSQERLLHVSTPVGSNSRQDDSDVSITKEGTTTRRGDCAAGLASGEPVAAGIGSVPKPFDGVTLTERMLRALAMLKEASGGEAILVQVWMPVRNGEQHVLTTSDQPFLLDQKLTGYREVSRQFTFSAEEGPGLFPGLPGRVFMSGMPEWTSNVMYYHGSEYLRVDYARRHEVRGSLAMPVFNSSGGSCCAVLEVVMTREKDNFCLEMVNVSNALQSSIISDEAFQMINFSDIVILQSVQLSTVNAWRHSQSYSRDQKLALMEIFDVLQAVCQAHLLPLALAWIPVCSKRDVLVSVEYGANFGKRNKEVLCIEESACYVNDTRMRDFVQVCAEHPLEKGQGVAGNAYLSNNPFFSSDVKDYDMHAYPLVNHALLCKGGGEQQLLLDSISVTMRRLIKCSNASDGEKRRSSTEKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKVNRSLKKIQNVISSVHGVEGVLKYDPSTGCLVSSVSPSIEPVLMNVEHKGSDPLPIESELPHLNFEPDCDAYRREHAGQDVLHKLQNKQNGEINFDMDDGELFRNSHSTRTLSGAFCEDMPNGLYVAREMTCVAKTGTRTERLEHKPSSRDTFSAPQEYRMESETDKSNKNSKQSLPSSSSMTDCSTSSGETFKSIKSQSANESNKTVVVKASYKNDTIRFKLLPSMKYEQLLEEIAKRLKLSIGLFQLKYKDDEGDWVILASDADLQECLEILDTTRLRILKLQVQDVVCPIGSSSGSCSMLRP
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0009540 | OsLiXu_11g0009540.02 | Chr11 | 9013838 | 9020913 | - | NAM | ||
| CDS seq | atggttgtaatttgttctagaacattttgttataaagttcatttcatgattgaattagcctctgagcttaatagtgacattgtaatcttgcagtctgttcagttaagcactgtcaatgcatggagacattctcagagctattcaagggaccagaaattagcattgatggaaatattcgatgttctgcaagctgtttgtcaagcacacttgctacctttggcacttgcatggattccagtttgctccaaaagagatgtgcttgtgtcagtagaatatggtgcaaattttggtaaaaggaacaaagaagtgctttgcatagaggaatctgcatgttatgtcaatgacacgagaatgcgtgattttgtccaagtctgtgctgaacacccccttgagaaaggacaaggtgtcgctggaaatgcatatttatcaaataatcccttcttctcatctgatgtgaaggattatgatatgcacgcttatccacttgtcaatcatgccctcttgtgcaaaggtggtggagaacaacagctcttacttgacagcatatctgtgaccatgcggagattaataaagtgtagcaatgcatccgacggagagaaaagacgcagctcaacagagaagagtgttagcttaagtgtcctccagcagtacttctctggcagcctgaaagatgctgcaaagagtattggtgtttgtcctactacgctgaaaaggatatgcagacaacatggaatatcaaggtggccatctcgtaagataaagaaggtaaaccgatccctaaagaagatccagaacgtcataagttcagtacatggagtcgagggagtgctgaaatatgatccttccactggatgccttgtttcatctgtttccccttccatagagcctgtattgatgaatgttgaacacaaaggttctgatcccctacctattgaatctgaacttccacatttgaacttcgaacctgactgtgatgcatatcgaagagaacatgcaggccaagatgtactccacaaactgcagaataagcaaaatggtgaaattaattttgacatggacgatggagaattatttcgaaactcacattctaccagaacattgagtggggcattctgtgaggatatgccgaatggtttatatgttgcaagggaaatgacttgtgttgcgaaaactggcacgaggacggagagactggagcacaaaccatcatcaagggatactttttctgcgccacaagaatacagaatggagagtgagactgacaagagcaataagaattccaaacaaagcctaccgtcctcttccagcatgacagattgctccacatcaagcggcgaaactttcaagagcatcaagagtcagtcagctaacgaaagcaacaaaaccgtcgtcgtaaaggcgagctacaagaatgacaccataaggttcaaattgctaccatccatgaaatacgagcagctgctcgaggaaatagcgaagaggctgaaactgtcaattggcctatttcagctcaagtacaaagacgatgagggtgactgggtgattttagcgagcgatgcggatctccaggaatgcctcgagatacttgacaccaccaggttgcgtatcttgaagcttcaggtgcaagatgttgtgtgtcctatcggaagttcgtcaggtagctgctccatgttacgtccatag
More
|
|||||||
| Protein seq | MVVICSRTFCYKVHFMIELASELNSDIVILQSVQLSTVNAWRHSQSYSRDQKLALMEIFDVLQAVCQAHLLPLALAWIPVCSKRDVLVSVEYGANFGKRNKEVLCIEESACYVNDTRMRDFVQVCAEHPLEKGQGVAGNAYLSNNPFFSSDVKDYDMHAYPLVNHALLCKGGGEQQLLLDSISVTMRRLIKCSNASDGEKRRSSTEKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKVNRSLKKIQNVISSVHGVEGVLKYDPSTGCLVSSVSPSIEPVLMNVEHKGSDPLPIESELPHLNFEPDCDAYRREHAGQDVLHKLQNKQNGEINFDMDDGELFRNSHSTRTLSGAFCEDMPNGLYVAREMTCVAKTGTRTERLEHKPSSRDTFSAPQEYRMESETDKSNKNSKQSLPSSSSMTDCSTSSGETFKSIKSQSANESNKTVVVKASYKNDTIRFKLLPSMKYEQLLEEIAKRLKLSIGLFQLKYKDDEGDWVILASDADLQECLEILDTTRLRILKLQVQDVVCPIGSSSGSCSMLRP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr11 | 9016540 | 9019797 | - | OsLiXu_11g0009540.02 | OsLiXu_11g0009540.01,OsLiXu_11g0009540.02 | All |
| RI | Chr11 | 9016499 | 9017496 | - | OsLiXu_11g0009540.02 | OsLiXu_11g0009540.03,OsLiXu_11g0009540.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.671846 | 0.0 | 2.533090 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0264300 | RBH | 5.771903 | 4.672488 | 7.215552 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g16290 | RBH | 2.365252 | 3.380028 | 1.485380 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0264300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0009850 | RBH | 2.632318 | 21.711075 | 7.106402 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0009730 | RBH | 1.243088 | 5.752732 | 5.135078 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0009750 | RBH | 5.863969 | 7.889024 | 18.544188 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0009560 | RBH | 1.216778 | 0.318471 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0009590 | RBH | 9.187252 | 12.766153 | 16.247768 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0135800 | RBH | 7.556091 | 20.2535905 | 23.0621595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0009670 | RBH | 1.295982 | 0.758240 | 1.701726 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0009790 | RBH | 1.018281 | 0.561078 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0009790 | RBH | 1.043132 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0009680 | RBH | 22.342422 | 17.961712 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009700 | RBH | 1.024956 | 7.467190 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G009840 | RBH | 1.656460 | 3.492865 | 5.169813 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0009600 | RBH | 3.135986 | 22.738276 | 9.403589 |
