Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0008550 | OGI:11022420 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:7705177-7708395 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tttagagaaaacaatcatattcataatgttctgtaaacacctttcttagttatatacagtacatgttcaaatacatgaggtagcaaacttaaaagcaacagaaaagaagggcgaggaaggtAaaaaaaaaaaaaacaagaagaagaaaaagaacatacacAacagaagattattaataagtttgctctaactgatcatttgttatcaccatgtgtagagatctaattcctctccatgaagttgttgataccgttgtttaagtaaagataaccaaaggggaaattccatctgcaaatcctttgataaccacaattgttgaacacaatccagcttctgggcccaccgtaaagcaggacattcagatacatacaaagttctaacttgaggaagatttgacaatctctccaaaccttcacacttgctgagtaaaagggagtcagaaaggaaagtaaggtcttccaccaccttcaaagcttgagccctctctatgtggagccatttcaaactggtcgcctgcgctagctgctgaggaagagctctaagctttggacagtctccaagttccaatttctgcaaaagaggcatcacttgcaaaaccattttgttgttttcagtacaactctttccatctgaagctcctactacttcttcagtgaatgaccactcctcccaattgggcatatctgatatgactaaccattcaagcttgggaaaggctattgtccccaagaacctgggagtagctgtcttgtcacaaagaaattcaggtccaatcttggttacagcagatgctcccatgatcttcagacacttcaagttaggcagctgaccaaccgccggaagatgtgcccaagatgcgcaatctatgagtcgcaagattttcagcgaagataaatcggcgccgagccaggtaggatacctttgaccaaaggatccagcaatactaagatcttctaggttgcatggaggttttagttcgtcaaaaacattctcaatattggtaatatcttccatggtatatgactcctttgtgtgtgtagtgcagcgtagatttaagaatttgaggtgtttcttgtctagtaGtgatgaagtaccacgaggcatggcattttccaatcttatcatgccaagtctcttcatttccgaaagatgacccagctcttccaagttccatccatcttgctttctggtgttaacatagctatgaccaacagggaacccttgtagatcattaagtaatgacaacttacttattcctcttggcacctggtttattggtgtatcgtcaagaccaaggcgccttaaactgcacagcttggtgattgccattggaagatcatgcaatgcatagcacctctgcaagttcaatatttgcaggtttgtgagagaaccgatggagtctggaagacaagatatatcggtagcatcaagatcaagcaaacgtagatggatcaagctgttgatgctatctggaattctttgtacaattgagCcagtcaagtccaaaactcgaagatgtggaaacctcatgaagacatcactatctatgtttggtgacatgcaaaacatcaaagtccttactctgcagtgacctttttcaaccacacttgataacatatctgttttgttgacaatcgaaatacgtctcagtttagaccaagtagtaggctctaaaggtagttgatcaaaatagcactcttctcttgataaatgttgagcaagatacctcaagagatcatgcattttgcacctgtagtgatcgaaataaaaaggatctggttcaagaaggtgcctacaaattaactcatggtaATatATTCTTCTGCTGTATCTTCTAGTAACTGGCCTTCTTGCTCTTCGACAAAGCCTTCTGCAACCCAAAACCGCACAAGATCAGCACGATGCATCATCTGACCTTCGACATAGAGAGCACAATAAaaggaagcactgctttagattgtgtggtagatcatcataacttaggtacaaagcacctctaagttcagctggaagcttgctcatagaccatgcactgctttctacaactttttcccatgtgttcttggtcttctccttggttgctagaacactagcaataaccttgattgcaagaggaagaccaccacatttgctgacaatcttggtccctatgtgttgcaaggtttccacttctttctcttctttgatattcatactcttccaaagtagctcccacccaacatctgtcgacatcatctcaactcgatggagatgctctgctccgactcttcgcacaaccaactcatctcgagctgttactaaaattgttgctttagcagcatcatgaaatggagttcgtaccacatttgtccatacctcggactgccatacatcatccaATACaacaaataagctttcatctttaatggtagaagcaagcttgctttggagctctccaacagtttcaccttgcctttcatgtactcccatattccgaagtaattctttcaaaaggttaacttcagaatattcttgagaaacacatatccaggcatgtttgctaaaattacctttcactctttgatcattgtatatgttttgagctagtgttgtctttccaactccacccgttccaacaattgcaaccttgaatgccttctcttccctgtgagtaagtatcatttccaccaatcttgaagtagcatatttaatctccttccccacaaggttgggttccacaagatgggatgtatgtctcttacttggtgcaagtactctgtaagtagccttcacattctctagtgctaaaaatgtcttgtcaattgatatcctctgaagattatagttgacccttctaatctggagcgcaatcttgcgatgagtccaaacattgcgaacgcaagacgtaacagagaggttacaacatgaaatatattttatcggcaatggagagggtgaagagtgatttactagaagcttactgccctcaaatttggccatgtcAATaatatcatctgcatcatagatagcgttcttcagctcaccaagccaattgttaacagcctcttcttctatcctcctctgctctgcatcatggagaaaacactgtatttgtttcatcctcctctgcagttctttgagctcttcatccacacctagtatcaatattgcctcttccatgacaatgccttgtaccttttttatacataatccaacaaaagaatctagtatggttgccat
More
|
||||||||||
| CDS seq | atggcaaccatactagattcttttgttggattatgtataaaaaaggtacaaggcattgtcatggaagaggcaatattgatactaggtgtggatgaagagctcaaagaactgcagaggaggatgaaacaaatacagtgttttctccatgatgcagagcagaggaggatagaagaagaggctgttaacaattggcttggtgagctgaagaacgctatctatgatgcagatgatattATTgacatggccaaatttgagggcagtaagcttctagtaaatcactcttcaccctctccattgccgataaaatatatttcatgttgtaacctctctgttacgtcttgcgttcgcaatgtttggactcatcgcaagattgcgctccagattagaagggtcaactataatcttcagaggatatcaattgacaagacatttttagcactagagaatgtgaaggctacttacagagtacttgcaccaagtaagagacatacatcccatcttgtggaacccaaccttgtggggaaggagattaaatatgctacttcaagattggtggaaatgatacttactcacagggaagagaaggcattcaaggttgcaattgttggaacgggtggagttggaaagacaacactagctcaaaacatatacaatgatcaaagagtgaaaggtaattttagcaaacatgcctggatatgtgtttctcaagaatattctgaagttaaccttttgaaagaattacttcggaatatgggagtacatgaaaggcaaggtgaaactgttggagagctccaaagcaagcttgcttctaccattaaagatgaaagcttatttgttGTATtggatgatgtatggcagtccgaggtatggacaaatgtggtacgaactccatttcatgatgctgctaaagcaacaattttagtaacagctcgagatgagttggttgtgcgaagagtcggagcagagcatctccatcgagttgagatgatgtcgacagatgttgggtgggagctactttggaagagtatgaatatcaaagaagagaaagaagtggaaaccttgcaacacatagggaccaagattgtcagcaaatgtggtggtcttcctcttgcaatcaaggttattgctagtgttctagcaaccaaggagaagaccaagaacacatgggaaaaagttgtagaaagcagtgcatggtctatgagcaagcttccagctgaacttagaggtgctttgtacctaagttatgatgatctaccacacaatctaaagcagtgcttccttTTATTGTGCTCTCTATGTCGAAGAAGGCTTTGTCGAAGAGCAAGAAGGCCAGTTACTAGAAGATACAGCAGAAGAATatATtaccatgagttaatttgtaggcaccttcttgaaccagatcctttttatttcgatcactacaggtgcaaaatgcatgatctcttgaggtatcttgctcaacatttatcaagagaagagtgctattttgatcaactacctttagagcctactacttggtctaaactgagacgtatttcgattgtcaacaaaacagatatgttatcaagtgtggttgaaaaaggtcactgcagagtaaggactttgatgttttgcatgtcaccaaacatagatagtgatgtcttcatgaggtttccacatcttcgagttttggacttgactgGctcaattgtacaaagaattccagatagcatcaacagcttgatccatctacgtttgcttgatcttgatgctaccgatatatcttgtcttccagactccatcggttctctcacaaacctgcaaatattgaacttgcagaggtgctatgcattgcatgatcttccaatggcaatcaccaagctgtgcagtttaaggcgccttggtcttgacgatacaccaataaaccaggtgccaagaggaataagtaagttgtcattacttaatgatctacaagggttccctgttggtcatagctatgttaacaccagaaagcaagatggatggaacttggaagagctgggtcatctttcggaaatgaagagacttggcatgataagattggaaaatgccatgcctcgtggtacttcatcaCtactagacaagaaacacctcaaattcttaaatctacgctgcactacacacacaaaggagtcatataccatggaagatattaccaatattgagaatgtttttgacgaactaaaacctccatgcaacctagaagatcttagtattgctggatcctttggtcaaaggtatcctacctggctcggcgccgatttatcttcgctgaaaatcttgcgactcatagattgcgcatcttgggcacatcttccggcggttggtcagctgcctaacttgaagtgtctgaagatcatgggagcatctgctgtaaccaagattggacctgaatttctttgtgacaagacagctactcccaggttcttggggacaatagcctttcccaagcttgaatggttagtcatatcagatatgcccaattgggaggagtggtcattcactgaagaagtagtaggagcttcagatggaaagagttgtactgaaaacaacaaaatggttttgcaagtgatgcctcttttgcagaaattggaacttggagactgtccaaagcttagagctcttcctcagcagctagcgcaggcgaccagtttgaaatggctccacatagagagggctcaagctttgaaggtggtggaagaccttactttcctttctgactcccttttactcagcaagtgtgaaggtttggagagattgtcaaatcttcctcaagttagaactttgtatgtatctgaatgtcctgctttacggtgggcccagaagctggattgtgttcaacaattgtggttatcaaaggatttgcagatggaatttcccctttggttatctttacttaaacaacggtatcaacaacttcatggagaggaattagatctctacacatggtga
More
|
||||||||||
| Protein seq | MATILDSFVGLCIKKVQGIVMEEAILILGVDEELKELQRRMKQIQCFLHDAEQRRIEEEAVNNWLGELKNAIYDADDIIDMAKFEGSKLLVNHSSPSPLPIKYISCCNLSVTSCVRNVWTHRKIALQIRRVNYNLQRISIDKTFLALENVKATYRVLAPSKRHTSHLVEPNLVGKEIKYATSRLVEMILTHREEKAFKVAIVGTGGVGKTTLAQNIYNDQRVKGNFSKHAWICVSQEYSEVNLLKELLRNMGVHERQGETVGELQSKLASTIKDESLFVVLDDVWQSEVWTNVVRTPFHDAAKATILVTARDELVVRRVGAEHLHRVEMMSTDVGWELLWKSMNIKEEKEVETLQHIGTKIVSKCGGLPLAIKVIASVLATKEKTKNTWEKVVESSAWSMSKLPAELRGALYLSYDDLPHNLKQCFLLLCSLCRRRLCRRARRPVTRRYSRRIYYHELICRHLLEPDPFYFDHYRCKMHDLLRYLAQHLSREECYFDQLPLEPTTWSKLRRISIVNKTDMLSSVVEKGHCRVRTLMFCMSPNIDSDVFMRFPHLRVLDLTGSIVQRIPDSINSLIHLRLLDLDATDISCLPDSIGSLTNLQILNLQRCYALHDLPMAITKLCSLRRLGLDDTPINQVPRGISKLSLLNDLQGFPVGHSYVNTRKQDGWNLEELGHLSEMKRLGMIRLENAMPRGTSSLLDKKHLKFLNLRCTTHTKESYTMEDITNIENVFDELKPPCNLEDLSIAGSFGQRYPTWLGADLSSLKILRLIDCASWAHLPAVGQLPNLKCLKIMGASAVTKIGPEFLCDKTATPRFLGTIAFPKLEWLVISDMPNWEEWSFTEEVVGASDGKSCTENNKMVLQVMPLLQKLELGDCPKLRALPQQLAQATSLKWLHIERAQALKVVEDLTFLSDSLLLSKCEGLERLSNLPQVRTLYVSECPALRWAQKLDCVQQLWLSKDLQMEFPLWLSLLKQRYQQLHGEELDLYTW |
||||||||||
| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0008550 | OsLiXu_11g0008550.01 | Chr11 | 7705177 | 7708395 | - | NAM | ||
| CDS seq | atggcaaccatactagattcttttgttggattatgtataaaaaaggtacaaggcattgtcatggaagaggcaatattgatactaggtgtggatgaagagctcaaagaactgcagaggaggatgaaacaaatacagtgttttctccatgatgcagagcagaggaggatagaagaagaggctgttaacaattggcttggtgagctgaagaacgctatctatgatgcagatgatattATTgacatggccaaatttgagggcagtaagcttctagtaaatcactcttcaccctctccattgccgataaaatatatttcatgttgtaacctctctgttacgtcttgcgttcgcaatgtttggactcatcgcaagattgcgctccagattagaagggtcaactataatcttcagaggatatcaattgacaagacatttttagcactagagaatgtgaaggctacttacagagtacttgcaccaagtaagagacatacatcccatcttgtggaacccaaccttgtggggaaggagattaaatatgctacttcaagattggtggaaatgatacttactcacagggaagagaaggcattcaaggttgcaattgttggaacgggtggagttggaaagacaacactagctcaaaacatatacaatgatcaaagagtgaaaggtaattttagcaaacatgcctggatatgtgtttctcaagaatattctgaagttaaccttttgaaagaattacttcggaatatgggagtacatgaaaggcaaggtgaaactgttggagagctccaaagcaagcttgcttctaccattaaagatgaaagcttatttgttGTATtggatgatgtatggcagtccgaggtatggacaaatgtggtacgaactccatttcatgatgctgctaaagcaacaattttagtaacagctcgagatgagttggttgtgcgaagagtcggagcagagcatctccatcgagttgagatgatgtcgacagatgttgggtgggagctactttggaagagtatgaatatcaaagaagagaaagaagtggaaaccttgcaacacatagggaccaagattgtcagcaaatgtggtggtcttcctcttgcaatcaaggttattgctagtgttctagcaaccaaggagaagaccaagaacacatgggaaaaagttgtagaaagcagtgcatggtctatgagcaagcttccagctgaacttagaggtgctttgtacctaagttatgatgatctaccacacaatctaaagcagtgcttccttTTATTGTGCTCTCTATGTCGAAGAAGGCTTTGTCGAAGAGCAAGAAGGCCAGTTACTAGAAGATACAGCAGAAGAATatATtaccatgagttaatttgtaggcaccttcttgaaccagatcctttttatttcgatcactacaggtgcaaaatgcatgatctcttgaggtatcttgctcaacatttatcaagagaagagtgctattttgatcaactacctttagagcctactacttggtctaaactgagacgtatttcgattgtcaacaaaacagatatgttatcaagtgtggttgaaaaaggtcactgcagagtaaggactttgatgttttgcatgtcaccaaacatagatagtgatgtcttcatgaggtttccacatcttcgagttttggacttgactgGctcaattgtacaaagaattccagatagcatcaacagcttgatccatctacgtttgcttgatcttgatgctaccgatatatcttgtcttccagactccatcggttctctcacaaacctgcaaatattgaacttgcagaggtgctatgcattgcatgatcttccaatggcaatcaccaagctgtgcagtttaaggcgccttggtcttgacgatacaccaataaaccaggtgccaagaggaataagtaagttgtcattacttaatgatctacaagggttccctgttggtcatagctatgttaacaccagaaagcaagatggatggaacttggaagagctgggtcatctttcggaaatgaagagacttggcatgataagattggaaaatgccatgcctcgtggtacttcatcaCtactagacaagaaacacctcaaattcttaaatctacgctgcactacacacacaaaggagtcatataccatggaagatattaccaatattgagaatgtttttgacgaactaaaacctccatgcaacctagaagatcttagtattgctggatcctttggtcaaaggtatcctacctggctcggcgccgatttatcttcgctgaaaatcttgcgactcatagattgcgcatcttgggcacatcttccggcggttggtcagctgcctaacttgaagtgtctgaagatcatgggagcatctgctgtaaccaagattggacctgaatttctttgtgacaagacagctactcccaggttcttggggacaatagcctttcccaagcttgaatggttagtcatatcagatatgcccaattgggaggagtggtcattcactgaagaagtagtaggagcttcagatggaaagagttgtactgaaaacaacaaaatggttttgcaagtgatgcctcttttgcagaaattggaacttggagactgtccaaagcttagagctcttcctcagcagctagcgcaggcgaccagtttgaaatggctccacatagagagggctcaagctttgaaggtggtggaagaccttactttcctttctgactcccttttactcagcaagtgtgaaggtttggagagattgtcaaatcttcctcaagttagaactttgtatgtatctgaatgtcctgctttacggtgggcccagaagctggattgtgttcaacaattgtggttatcaaaggatttgcagatggaatttcccctttggttatctttacttaaacaacggtatcaacaacttcatggagaggaattagatctctacacatggtga
More
|
|||||||
| Protein seq | MATILDSFVGLCIKKVQGIVMEEAILILGVDEELKELQRRMKQIQCFLHDAEQRRIEEEAVNNWLGELKNAIYDADDIIDMAKFEGSKLLVNHSSPSPLPIKYISCCNLSVTSCVRNVWTHRKIALQIRRVNYNLQRISIDKTFLALENVKATYRVLAPSKRHTSHLVEPNLVGKEIKYATSRLVEMILTHREEKAFKVAIVGTGGVGKTTLAQNIYNDQRVKGNFSKHAWICVSQEYSEVNLLKELLRNMGVHERQGETVGELQSKLASTIKDESLFVVLDDVWQSEVWTNVVRTPFHDAAKATILVTARDELVVRRVGAEHLHRVEMMSTDVGWELLWKSMNIKEEKEVETLQHIGTKIVSKCGGLPLAIKVIASVLATKEKTKNTWEKVVESSAWSMSKLPAELRGALYLSYDDLPHNLKQCFLLLCSLCRRRLCRRARRPVTRRYSRRIYYHELICRHLLEPDPFYFDHYRCKMHDLLRYLAQHLSREECYFDQLPLEPTTWSKLRRISIVNKTDMLSSVVEKGHCRVRTLMFCMSPNIDSDVFMRFPHLRVLDLTGSIVQRIPDSINSLIHLRLLDLDATDISCLPDSIGSLTNLQILNLQRCYALHDLPMAITKLCSLRRLGLDDTPINQVPRGISKLSLLNDLQGFPVGHSYVNTRKQDGWNLEELGHLSEMKRLGMIRLENAMPRGTSSLLDKKHLKFLNLRCTTHTKESYTMEDITNIENVFDELKPPCNLEDLSIAGSFGQRYPTWLGADLSSLKILRLIDCASWAHLPAVGQLPNLKCLKIMGASAVTKIGPEFLCDKTATPRFLGTIAFPKLEWLVISDMPNWEEWSFTEEVVGASDGKSCTENNKMVLQVMPLLQKLELGDCPKLRALPQQLAQATSLKWLHIERAQALKVVEDLTFLSDSLLLSKCEGLERLSNLPQVRTLYVSECPALRWAQKLDCVQQLWLSKDLQMEFPLWLSLLKQRYQQLHGEELDLYTW
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.072530 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0676100 | SBH | 1.142762 | 1.287942 | 1.539014 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g13940 | RBH | 0.095463 | 0.084397 | 0.177484 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0676100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008790 | RBH | 0.110291 | 1.661641 | 1.474589 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008680 | RBH | 0.074559 | 1.223976 | 0.928788 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008660 | RBH | 0.578641 | 4.067461 | 2.490123 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008530 | RBH | 0.0 | 0.032560 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008600 | RBH | 1.037248 | 3.654542 | 3.168112 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0117100 | RBH | 0.652459 | 1.500245 | 1.35839 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008630 | RBH | 0.024645 | 0.000000 | 0.440406 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0121400 | RBH | 0.957184 | 1.5453925 | 5.255503 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008690 | RBH | 0.025478 | 0.040422 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008780 | RBH | 0.104925 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008700 | RBH | 0.0 | 2.755374 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006460 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008700 | RBH | 0.000000 | 0.804332 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008740 | RBH | 0.118923 | 0.268710 | 0.614158 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008620 | RBH | 0.000000 | 4.252161 | 0.000000 |
