Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0008310 | OGI:11021690 | 14/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:7433743-7437616 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggagatcgatggcaggagttggggagaagatgatggttagcgccttgacgggggtgatgagccccgtgctcggcaagctcgccggtctcatggagcaggagtattccaagctcaggggcgtgaggaaggatggagcagctcaggaaggagctcatcacaatcaacctcgcggtggagcagtacgcgtccatggatgacgacccggacaagctgaggagggcatgggtaaaggagatccgggagctcgcctacgacatcgaggactgcatagatctgttcgtccaccgctccaaccacgaattctccgccggcggtggcgtcaggaggctcctcctcgacagcatcagtaagcttcgggggcttcaccatcgccacaagttcgccgcccagatccagcagctcaagaacaccgccggcgaaatccacgagaggaacttgaaatacaaggccgatggctgcagctctgctgcaacaccaccacatacagagatcgatcctcgcttgccggcgctctacgaggaggcggaaaggctcgtggggatcgagcgccagatggaagaaatcatcactaggtttctggttctggagagcacaccgacgaacaagtgcagcatcatttcgattgttggtcagggaggcttaggcaagaccacccttgctcgtcaggtgtacctgagaatccggggtgaatacaaatgttcagcttttctgtccgtctcacaaaggcctaacatgaatagccttttgagggatatgctctcaaaatttcagaggagtagccgggaccaagacagtgatcaacaaattggagcaagtagtgaccagcaactcattgatcacctaagagcatatcttgaggataaacgtctgaaagatcctcaggataaagggtaagctctacccttatttcattgcccttcttacttggacaatctgatgactatatggtcttttcttccaactacttagacatgaacaaacggattttttgtggatgtttgccttatttcctagttttgtgttagacatcgctgacggatatattgacatttaacttaatattactacagtttagtagttcacaaggatcgattgtaatatatagatatcgatagatatgcctttttaattgagtcttggtgctttcagaaatgagaactttaatgatgcgttctgcttctcaaccttgtataatatgtaggtaccttgttgtcatagatgatatttggagtaccacggcatggaaaacaatacagtgtgctcttcccacaactatccatgcaagcaggataataataacaacacgcatcaacaacatagctgaatcttgttgcactccatgtaaaggctttgtttataaaatggaaccccttagcagacagaactctgaaattttgttcgtgaaaaggatatttggtgccaacagtacatgcccaagtcagctgaaggagatcatgaatgagatactagataaatgtgatggtttgccactggccattgtcacattagcaagcatgttggctaataatcgaaggaaggaagaatgggaaagagtgttgaagtctataggttccacacatgagaaatatggagagtgggataccatacataagatattatccctgagttacaatgacttgcctctctatttacgcccttgcttattgtaccttactacatttccagaagattatgagattgataaaagccgcttgatatggagttggatatgtgaaggattcataacaacaaaacaacaatattctttggatgaagtaggtgagagttacttcaatgatctcattaataggagtttgattataccaatcaaaatagaatctgatggtgaagccagaggatgtcgagttcatgatatagttctcgacttcattctctcccgatcaattgaagaaaattttgtaactgtacttgatggtcaggagaactcatctcaacttggcaagattcgcaggctccttttccaaaataatgatgaacctgctggagcaatatcactaggaactatggagctatctcatctccgatcacttaattcttttggtgtttctaggttgatgccccctcttcaggacctgcaagttcttcgagtgttagacctagaggactaccctgaggagaatggtcaaggattatAtaattatctggagaatattggatgtctgttacatttgcgatatttggccctcagttggatagagaagcttccagtccagataggaaagttggaatttttgcagacactcgatctgttagggactaatatagaagagttaccagaaacccttattcagctcaaacggttgatacgtctggtagggaatggactaagattgccaggtgggtttggtcagatggaagctctgcaagagctatgggatgttgatgttggcatatgctcaataaactttgtggaagatctacaaaatttgaaacagctgagagctctgggagtacatttttactggttacagagtggttattcaaaaattgggctgagagctttggcctcatccctctgtaatatgggggaacataaccttcggtatctacagatttccaatgacacaaaacatggtgatatagattgccttgtagattcatggtgcggtcctcaacgttcccttgaatgctttgtgttgggaggcagttacgattggtttcccaggcttccaaagtggtctaatccctcattttcagagcttaccaacttgcagtgcaatgttgagctaatggaaaaggaagatctggatatgctcggtgaattgcctgctcttcttgtccttgagctaattgtagaaaaaactcccaaagatggacttagggtgggtcaaaatggattctcatgtttaacatgtctcgtcttctatgacatatatggccctggtttgatgtttgaagaatatgcaatgccaaagctcgaaaagctttaccttggattaagcgcatattccgcatataatgcatatggaggttttggacttggaatccgacacctctcctctctcaatctgtactctatttccgttggaattgaacgcaaatgtaaatatgttccagagacgaaggctgctgcaatgtctattatcaacaacgaattcaagtcgcttcctcacccacccaaggttgaattcacaataatccatgtatatggggatcttgttgtaagtatatttgcccacgtttctttgacaacttgattctcaatgaaactgtgcgtgcataaattttactatatttcattttttttttcgtgaaggaggagtctgaactagagaccgacttttcgatcttatctaaaatcatcaaggctaggctcaggtactgtcaatttatccctccaatcttcctttactatgttgctgtaatatctgtgctctagttcctcatattttgattgatttaacgctctaaatcctcatattttaaatgatttatgacaacgacataggattcatgttttctccaattcaccctatattgactttatttcaaacaattacctcatgcccagttctcctcttcaagattataaaggatacagtgggagcccttccacaagcaatgaagcaaatagcatgaactgagaataacaccgcagaaacaaagctgtgtatacatgcacccaagcccgaacctgctgtccaaattcctgtcatcttcaaaatgttattttccttcagaacaattcctatgcaaacttcgcaaagttaacgaggcaatatttaacagtagattatagccagatttcagtagtagatgtttttcagctatatgtttttttagtgcaaacagtagctaaggatcctaccgtgtgtttttgtgcataataaataacaaaaggtgcaaatgttcc
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| CDS seq | atggagcagctcaggaaggagctcatcacaatcaacctcgcggtggagcagtacgcgtccatggatgacgacccggacaagctgaggagggcatgggtaaaggagatccgggagctcgcctacgacatcgaggactgcatagatctgttcgtccaccgctccaaccacgaattctccgccggcggtggcgtcaggaggctcctcctcgacagcatcagtaagcttcgggggcttcaccatcgccacaagttcgccgcccagatccagcagctcaagaacaccgccggcgaaatccacgagaggaacttgaaatacaaggccgatggctgcagctctgctgcaacaccaccacatacagagatcgatcctcgcttgccggcgctctacgaggaggcggaaaggctcgtggggatcgagcgccagatggaagaaatcatcactaggtttctggttctggagagcacaccgacgaacaagtgcagcatcatttcgattgttggtcagggaggcttaggcaagaccacccttgctcgtcaggtgtacctgagaatccggggtgaatacaaatgttcagcttttctgtccgtctcacaaaggcctaacatgaatagccttttgagggatatgctctcaaaatttcagaggagtagccgggaccaagacagtgatcaacaaattggagcaagtagtgaccagcaactcattgatcacctaagagcatatcttgaggataaacgtctgaaagatcctcaggataaagggtaccttgttgtcatagatgatatttggagtaccacggcatggaaaacaatacagtgtgctcttcccacaactatccatgcaagcaggataataataacaacacgcatcaacaacatagctgaatcttgttgcactccatgtaaaggctttgtttataaaatggaaccccttagcagacagaactctgaaattttgttcgtgaaaaggatatttggtgccaacagtacatgcccaagtcagctgaaggagatcatgaatgagatactagataaatgtgatggtttgccactggccattgtcacattagcaagcatgttggctaataatcgaaggaaggaagaatgggaaagagtgttgaagtctataggttccacacatgagaaatatggagagtgggataccatacataagatattatccctgagttacaatgacttgcctctctatttacgcccttgcttattgtaccttactacatttccagaagattatgagattgataaaagccgcttgatatggagttggatatgtgaaggattcataacaacaaaacaacaatattctttggatgaagtaggtgagagttacttcaatgatctcattaataggagtttgattataccaatcaaaatagaatctgatggtgaagccagaggatgtcgagttcatgatatagttctcgacttcattctctcccgatcaattgaagaaaattttgtaactgtacttgatggtcaggagaactcatctcaacttggcaagattcgcaggctccttttccaaaataatgatgaacctgctggagcaatatcactaggaactatggagctatctcatctccgatcacttaattcttttggtgtttctaggttgatgccccctcttcaggacctgcaagttcttcgagtgttagacctagaggactaccctgaggagaatggtcaaggattatAtaattatctggagaatattggatgtctgttacatttgcgatatttggccctcagttggatagagaagcttccagtccagataggaaagttggaatttttgcagacactcgatctgttagggactaatatagaagagttaccagaaacccttattcagctcaaacggttgatacgtctggtagggaatggactaagattgccaggtgggtttggtcagatggaagctctgcaagagctatgggatgttgatgttggcatatgctcaataaactttgtggaagatctacaaaatttgaaacagctgagagctctgggagtacatttttactggttacagagtggttattcaaaaattgggctgagagctttggcctcatccctctgtaatatgggggaacataaccttcggtatctacagatttccaatgacacaaaacatggtgatatagattgccttgtagattcatggtgcggtcctcaacgttcccttgaatgctttgtgttgggaggcagttacgattggtttcccaggcttccaaagtggtctaatccctcattttcagagcttaccaacttgcagtgcaatgttgagctaatggaaaaggaagatctggatatgctcggtgaattgcctgctcttcttgtccttgagctaattgtagaaaaaactcccaaagatggacttagggtgggtcaaaatggattctcatgtttaacatgtctcgtcttctatgacatatatggccctggtttgatgtttgaagaatatgcaatgccaaagctcgaaaagctttaccttggattaagcgcatattccgcatataatgcatatggaggttttggacttggaatccgacacctctcctctctcaatctgtactctatttccgttggaattgaacgcaaatgtaaatatgttccagagacgaaggctgctgcaatgtctattatcaacaacgaattcaagtcgcttcctcacccacccaaggttgaattcacaataatccatgtatatggggatcttgttgaggagtctgaactagagaccgacttttcgatcttatctaaaatcatcaaggctaggctcagttctcctcttcaagattataaaggatacagtgggagcccttccacaagcaatgaagcaaatagcatgaactga
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| Protein seq | MEQLRKELITINLAVEQYASMDDDPDKLRRAWVKEIRELAYDIEDCIDLFVHRSNHEFSAGGGVRRLLLDSISKLRGLHHRHKFAAQIQQLKNTAGEIHERNLKYKADGCSSAATPPHTEIDPRLPALYEEAERLVGIERQMEEIITRFLVLESTPTNKCSIISIVGQGGLGKTTLARQVYLRIRGEYKCSAFLSVSQRPNMNSLLRDMLSKFQRSSRDQDSDQQIGASSDQQLIDHLRAYLEDKRLKDPQDKGYLVVIDDIWSTTAWKTIQCALPTTIHASRIIITTRINNIAESCCTPCKGFVYKMEPLSRQNSEILFVKRIFGANSTCPSQLKEIMNEILDKCDGLPLAIVTLASMLANNRRKEEWERVLKSIGSTHEKYGEWDTIHKILSLSYNDLPLYLRPCLLYLTTFPEDYEIDKSRLIWSWICEGFITTKQQYSLDEVGESYFNDLINRSLIIPIKIESDGEARGCRVHDIVLDFILSRSIEENFVTVLDGQENSSQLGKIRRLLFQNNDEPAGAISLGTMELSHLRSLNSFGVSRLMPPLQDLQVLRVLDLEDYPEENGQGLYNYLENIGCLLHLRYLALSWIEKLPVQIGKLEFLQTLDLLGTNIEELPETLIQLKRLIRLVGNGLRLPGGFGQMEALQELWDVDVGICSINFVEDLQNLKQLRALGVHFYWLQSGYSKIGLRALASSLCNMGEHNLRYLQISNDTKHGDIDCLVDSWCGPQRSLECFVLGGSYDWFPRLPKWSNPSFSELTNLQCNVELMEKEDLDMLGELPALLVLELIVEKTPKDGLRVGQNGFSCLTCLVFYDIYGPGLMFEEYAMPKLEKLYLGLSAYSAYNAYGGFGLGIRHLSSLNLYSISVGIERKCKYVPETKAAAMSIINNEFKSLPHPPKVEFTIIHVYGDLVEESELETDFSILSKIIKARLSSPLQDYKGYSGSPSTSNEANSMN |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0008310 | OsLiXu_11g0008310.01 | Chr11 | 7433743 | 7437616 | + | NAM | ||
| CDS seq | atggagcagctcaggaaggagctcatcacaatcaacctcgcggtggagcagtacgcgtccatggatgacgacccggacaagctgaggagggcatgggtaaaggagatccgggagctcgcctacgacatcgaggactgcatagatctgttcgtccaccgctccaaccacgaattctccgccggcggtggcgtcaggaggctcctcctcgacagcatcagtaagcttcgggggcttcaccatcgccacaagttcgccgcccagatccagcagctcaagaacaccgccggcgaaatccacgagaggaacttgaaatacaaggccgatggctgcagctctgctgcaacaccaccacatacagagatcgatcctcgcttgccggcgctctacgaggaggcggaaaggctcgtggggatcgagcgccagatggaagaaatcatcactaggtttctggttctggagagcacaccgacgaacaagtgcagcatcatttcgattgttggtcagggaggcttaggcaagaccacccttgctcgtcaggtgtacctgagaatccggggtgaatacaaatgttcagcttttctgtccgtctcacaaaggcctaacatgaatagccttttgagggatatgctctcaaaatttcagaggagtagccgggaccaagacagtgatcaacaaattggagcaagtagtgaccagcaactcattgatcacctaagagcatatcttgaggataaacgtctgaaagatcctcaggataaagggtaccttgttgtcatagatgatatttggagtaccacggcatggaaaacaatacagtgtgctcttcccacaactatccatgcaagcaggataataataacaacacgcatcaacaacatagctgaatcttgttgcactccatgtaaaggctttgtttataaaatggaaccccttagcagacagaactctgaaattttgttcgtgaaaaggatatttggtgccaacagtacatgcccaagtcagctgaaggagatcatgaatgagatactagataaatgtgatggtttgccactggccattgtcacattagcaagcatgttggctaataatcgaaggaaggaagaatgggaaagagtgttgaagtctataggttccacacatgagaaatatggagagtgggataccatacataagatattatccctgagttacaatgacttgcctctctatttacgcccttgcttattgtaccttactacatttccagaagattatgagattgataaaagccgcttgatatggagttggatatgtgaaggattcataacaacaaaacaacaatattctttggatgaagtaggtgagagttacttcaatgatctcattaataggagtttgattataccaatcaaaatagaatctgatggtgaagccagaggatgtcgagttcatgatatagttctcgacttcattctctcccgatcaattgaagaaaattttgtaactgtacttgatggtcaggagaactcatctcaacttggcaagattcgcaggctccttttccaaaataatgatgaacctgctggagcaatatcactaggaactatggagctatctcatctccgatcacttaattcttttggtgtttctaggttgatgccccctcttcaggacctgcaagttcttcgagtgttagacctagaggactaccctgaggagaatggtcaaggattatAtaattatctggagaatattggatgtctgttacatttgcgatatttggccctcagttggatagagaagcttccagtccagataggaaagttggaatttttgcagacactcgatctgttagggactaatatagaagagttaccagaaacccttattcagctcaaacggttgatacgtctggtagggaatggactaagattgccaggtgggtttggtcagatggaagctctgcaagagctatgggatgttgatgttggcatatgctcaataaactttgtggaagatctacaaaatttgaaacagctgagagctctgggagtacatttttactggttacagagtggttattcaaaaattgggctgagagctttggcctcatccctctgtaatatgggggaacataaccttcggtatctacagatttccaatgacacaaaacatggtgatatagattgccttgtagattcatggtgcggtcctcaacgttcccttgaatgctttgtgttgggaggcagttacgattggtttcccaggcttccaaagtggtctaatccctcattttcagagcttaccaacttgcagtgcaatgttgagctaatggaaaaggaagatctggatatgctcggtgaattgcctgctcttcttgtccttgagctaattgtagaaaaaactcccaaagatggacttagggtgggtcaaaatggattctcatgtttaacatgtctcgtcttctatgacatatatggccctggtttgatgtttgaagaatatgcaatgccaaagctcgaaaagctttaccttggattaagcgcatattccgcatataatgcatatggaggttttggacttggaatccgacacctctcctctctcaatctgtactctatttccgttggaattgaacgcaaatgtaaatatgttccagagacgaaggctgctgcaatgtctattatcaacaacgaattcaagtcgcttcctcacccacccaaggttgaattcacaataatccatgtatatggggatcttgttgaggagtctgaactagagaccgacttttcgatcttatctaaaatcatcaaggctaggctcagttctcctcttcaagattataaaggatacagtgggagcccttccacaagcaatgaagcaaatagcatgaactga
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| Protein seq | MEQLRKELITINLAVEQYASMDDDPDKLRRAWVKEIRELAYDIEDCIDLFVHRSNHEFSAGGGVRRLLLDSISKLRGLHHRHKFAAQIQQLKNTAGEIHERNLKYKADGCSSAATPPHTEIDPRLPALYEEAERLVGIERQMEEIITRFLVLESTPTNKCSIISIVGQGGLGKTTLARQVYLRIRGEYKCSAFLSVSQRPNMNSLLRDMLSKFQRSSRDQDSDQQIGASSDQQLIDHLRAYLEDKRLKDPQDKGYLVVIDDIWSTTAWKTIQCALPTTIHASRIIITTRINNIAESCCTPCKGFVYKMEPLSRQNSEILFVKRIFGANSTCPSQLKEIMNEILDKCDGLPLAIVTLASMLANNRRKEEWERVLKSIGSTHEKYGEWDTIHKILSLSYNDLPLYLRPCLLYLTTFPEDYEIDKSRLIWSWICEGFITTKQQYSLDEVGESYFNDLINRSLIIPIKIESDGEARGCRVHDIVLDFILSRSIEENFVTVLDGQENSSQLGKIRRLLFQNNDEPAGAISLGTMELSHLRSLNSFGVSRLMPPLQDLQVLRVLDLEDYPEENGQGLYNYLENIGCLLHLRYLALSWIEKLPVQIGKLEFLQTLDLLGTNIEELPETLIQLKRLIRLVGNGLRLPGGFGQMEALQELWDVDVGICSINFVEDLQNLKQLRALGVHFYWLQSGYSKIGLRALASSLCNMGEHNLRYLQISNDTKHGDIDCLVDSWCGPQRSLECFVLGGSYDWFPRLPKWSNPSFSELTNLQCNVELMEKEDLDMLGELPALLVLELIVEKTPKDGLRVGQNGFSCLTCLVFYDIYGPGLMFEEYAMPKLEKLYLGLSAYSAYNAYGGFGLGIRHLSSLNLYSISVGIERKCKYVPETKAAAMSIINNEFKSLPHPPKVEFTIIHVYGDLVEESELETDFSILSKIIKARLSSPLQDYKGYSGSPSTSNEANSMN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0237600 | RBH | 1.552498 | 1.692249 | 2.638729 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g13410 | RBH | 1.046051 | 1.136062 | 0.676784 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0237600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008480 | RBH | 0.233457 | 5.481625 | 3.894027 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008380 | RBH | 0.155848 | 0.913785 | 1.575916 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008380 | RBH | 0.626537 | 2.656049 | 6.913966 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008210 | RBH | 0.129555 | 0.053804 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008330 | RBH | 5.466552 | 7.478732 | 5.477755 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0111300 | RBH | 2.7423905 | 6.066996 | 7.753699 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008360 | RBH | 0.263948 | 0.409760 | 0.745347 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0117300 | RBH | 3.2345535 | 4.3525685 | 7.3448565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008420 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008510 | RBH | 0.421237 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008470 | RBH | 7.740854 | 8.555429 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0065920 | RBH | 0.531295 | 0.0 | 0.087028 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008410 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008470 | RBH | 0.474893 | 0.678463 | 1.076020 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008330 | SBH | 0.0 | 0.0 | 0.326098 |
