Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0007970 | OGI:11020440 | 11/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:7079374-7085123 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatttgatcctgtacacttacaatatcatgtcaatagatatttctaaaatgaccagcagacaattgcaagcttataagcttgaacaaaatttttataacttccataaccaataaatagattaccaggggtttttcatcagcaagcgatacaatctttggatgttaaccagaaaccagtccattatccaaagtctaacctttatttttatgcaacataacaaaaagagtataagatattagtccttgtacaatcatcatatttaataaaaaaaagtgtcccctttccataccaatgaggttcttgttagagcaaatatctgaaatttagagctaacacatgtcaattcagaaatgtgcaaaatactaaccgcttgttttccagtaactgaaaaaacatccagaataatcctgattcaccttgctatgaagaTtAtttcttgcaaaagatagataataatttcatgagaaacaaatttcccctggttaacagtttcaggtttcaacgagctgcaaaaagaaggggatccaaaatctgttattatagtaaaatttgcacacctattaatacaagtgttattcaaaactcaattgaagtgtgatggattggggatataacctcaggagttacgtgtgattcaaagtcaatttaagatttacttccaggcctcgaatataatattcagacctcaatttcagtcacacttccagtcttcaaattcattttttattatggtgtaacatatatgctaggagtaaaatctgtcacggttaaatgcatggtaatggtaaggtaaagtgacaatgtatacagtcatatagcagttctggaagcatataccattaagtaagaagaatagaatgacctaacttctcatatagtcatatgatcgctttcccgtatggcactccttaagaatactaaccagatattgttgatattgcgattaaccttacaaccaattgagttacttagaaatctgtccagaccagtctaatggaaaatataatgcactaaatagagcatgggaattgggaaagtgtcaagtatggcaatatgttcagattaaccaaatgggaaacaacaaggggtctgaagaacggaagcaggtggttggtgcgacaatgggtaggttctgctcctgctagatgatggtgatggatacacaaaataaatgtggaaaagttagagtgcaaatcattcatgattaaaatcaaaatcagtatcttgaaaattcacttagaaaaaatccagaactgatatcgccaaattcagaaaaattcagaacttgaaagaacagggatgccctgatttggtgtaaatacggtcaaattgttgcttgcacaaatttattgactgcaattaacatataagagatcattatactgataatgacctagctcgtcgggtcttgtatccacccctggttcatagcgttgcaccaaagtatttgtcgtcaggcggccttgtaggatggtcaatggagccatagaggttctacatgccaccccacatgacgccaagtcttgcagcaccaggctacatataaactgcgccaaaatttcatggctctatgcttaaggaatgtttcagaaaagttttatcagggggttaatttataataaaatatgtaaaaattaccctcatgtaacagggtgggcacatagaggatgaaaataaattaaaactcaagataatgtaagggatgaaacgaaactgagtggcacataagtatttattttcatagcctttttgctaattaactcctacaaggactgatgccctgtgttctgttagtttgctttagtttgttactgcattatgtaatacaatctgtgcctttgttcagcacacatggaggctgtaatcctcgctgtctcaaagattggttctgttttagtggaggaagccaccaaagctgctataaccaagctatctgaaaaagctacaaatcttaaggaactgccatcaaaggttgaggaaatagaggatgaactgaagacgatgaacaatgttataaaacagatgagtacaacaaatcttacagacgaggttgtcaagggttggattgcagaggtgcgaggtctggcccaccgtgttcaggacataatggacaaatattcataccatgctcttaaattggaagaagaaaattctgtcaagaaactcttcaccacaccgaattatgtcacggttttcagtgaaattgctgaagagattagcaagatagagAaaaaaattgaaaatgttgcaacgcggaaaaaacggtggcagcagcagtcccaccacactcccaatccgcttgcagatattgaaaggaaacggtcccaagactgccttctagctccagatgatctagttgggatagaagacaacaggaaactgttgactgactggttgtactccaaagagcaagataacacaataataacagtatctggtatgggtggattggggaaaaccaccctggtcaataatgtatatgcgggagaagaacaatttcgaagttagtacttggattgtcgtgtcacagtcatatgatgtcgttgatttgctgaggaaattgcttaggaagattgtgcctgatgatcaaacacagctattagatttggatgctcatgacttgaaaattagaataaaggaaaagcttaaggatgaaaattttctaattgtattggatgatgtctggaaccgagaagcatacactcaaatagcagatgcattcccaaacttccaagcaagtcgcataatcatcacaacacgacagggtgatgtagcaactcttgctcagtcagcacgccaactcaaactcaacccattggagcacactgacgcgcttgaactcttctgtagaagggctttctacagaaactgcaagtgtccacagaaccttgagaaactgactaatgatatagtagttaggtgccaaggtctgccactggcaatcgtatctataggtggcctattgtcttcattgccaccagagaatcaagtctggaatgaaacatacaagcaacttcgaagtgagctcacaaaaaacaataatgttcaagcaattctaaatatgagctatcatgacttaccgggagatcttagaaactgcttcttgtattgtagcctgttccccgaagatcatgaattatcacgtgagaccgttgtacggttgtgggtcgcagaagggtttgcagtacaaaatgaagaaaacacaccagaggaggtggctgaaaaatatcttcgtgaattgatacaaaggaatatggaagttcttggaaatgatgataggcagggttagtacctttaagatgcatgacctcgtgcgggacctggctctttctattgctaaagagagaagttcggctctgcaaaaattatgacactatggagaggatggataaggaagttcgtcgcttgtcatcatatggatggaagggcaaacctgtgttgcaagttaaattcatgcgtctccggaccctagtggcacttggaatgaaaacaccctctcgtcacatgttatcctcaattttgtctgaatccaactatcttactgttctcgagttgcaagattctgaaataactgaagtgccagcatccataggagagctatttaatctacgctacatcggcctgcagcgcactagagtcaaatcacttccagaatctattgggaagctctcaagcctcctgactctcaacatcaagcaaaccaaaatacaaaagctaccacaaagcattgttaagattaagaagctgaggcaccttctagctgacagatatgaagacgagaaacagtcagcgtttcgctatttcattggaatgcaagcacccaagagctatccaacttggaagaactccagacccttgagactgtggaagccagcaaagaattggctgagcagttgatgaaacttatgcaactacggagcgtgtggattgacaacataagaactgatgattgtgcaaatctttttgctacactatcaaagatgccacttctttccagcttgcttctatctgcaagtcatgaaaacgagacactttgcttggaagctctcaaaccagaatcagaggagcttcataggctgattgtcagagggtgctgggcagctaggacacttgagtacccaatatttcgtgaccatgggaaaaatatcaagtatctggccataagctggtgccgtcttcaggaagatcctctactcctccttgcaccctatgtgccaaaccttgtctttcttagccttaacagggtgaatagtgcaagcaccttggttctttctgcagattgcttccctcagctgaagacacttgtcttgaagcgtatgcctgatgtaaaccacttggagattataggcggtgccctccaacacattgaaggtttatatgttgtgtcattgccaaagttggacaatgtccctcaaggcattgagtctcttaggtatctgaagaagctgtggctcttgggtctgcataagaatttcaggtctcagtggcAaaaaaatggaatgcaccaaaagatgcaacatgttccagagctgcatgtcaaggactagaaactttgcttacttttgcagtattatttctgtctggtgattatgggctcagccacattatgcatttagtcttttccaacaaatgatcagtttatgacagatgagctagcggcaccactacatcgcaacctcgttattggaaataagtcctgaaatattggctttcatggccatcaggaaactactttgtcatatgtcctattgttttgcttcacaactttgcagaatttatgaaactggtccttttattgttgacctgcattcttgattaatggtgtcactcttttcatctccaaattcatgattactagaaaggttgctagttggtacacagtgttaataaataaccgcataacatttggtatagtaccactgaaatggagcatcatcacaaattcacagtagaggggtgccttccactccacaaaaaatcaaatgggacttaaccctcaaacgttttaaatgcttgcccggtttagataactaagatgataaaacacgttattcaacagataaagtaaaaaaacacacatctgaaataattttcttcttaactatcaagcaggcagctctcctgacaggtttcagttcaaaaggggcaaagattcagcagccagcaatagattttgtgtagttgactaaataaggcgaaacggataagggtcacatcccatggataagatgctaaacagttgtgaaaaaacaaagtttcaaatggtatagtcattttccccttgattttaccactgtatttagccgaaacagtccaaatgactactctgcattttatttcaagcggctctgtgctgtgtgtgacagggcaatctcgagtactacgaacttgtttgtatctcatcctcaacaaacatgaacaacggaatttccacccatatagggaagtgaaagcgctactacagcagcatacacgcaaatatcaacaaaaccagcgatgaactgggataatctgagcgataaaccgcagaaaaaatcagggcgttaccagggccaaaagggaccagcctccagccgttgccgacgccgaagccgacgcccgcgccgggggtggggacgagggggagctacctgcggtcggcggcgttggacgcgatggagtggacgtgagcggcgcggcgcggcggcggccgtggccgtcgccggcgagagggtgttggggctggccactgggcaccggattgtccat
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| CDS seq | atggacaatccggtgcccagtggccagccccaacaccctctcgccggcgacggccacggccgccgccgcgccgcgccgctcacgtccactccatcgcgtccaacgccgccgaccgcaggtagctccccctcgtccccacccccggcgcgggcgtcggcttcggcgtcggcaacggctggaggctggtcccttttggccctgacccaagagccacagcttcttcagatacctaagagactcaatgccttgagggacattggcaccgcctataatctccaagtggtttacatcaggcatacgcttcaagacaagtgtcttcagctgagggaagcaatctgcagaaagaaccaaggtgcttgcactattcaccctgttaaggctaagaaagacaagagccgaacttctctctttagcaatagaaagagccaggtcccgcacgaggtcatgcatcttaaaggcacaatcttcctaagcaatttcctcagcaaatcaacgacatcatatgactgtgacacgacaatccaagtactaacttcgaaattgttcttctcccgcatatacattattgaccagggtgatagcttggttatagcagctttggtggcttcctccactaaaacagaaccaatctttgagacagcgaggattacagcctccatgtgtgctgaacaaaggcacagattgatcaaatga
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| Protein seq | MDNPVPSGQPQHPLAGDGHGRRRAAPLTSTPSRPTPPTAGSSPSSPPPARASASASATAGGWSLLALTQEPQLLQIPKRLNALRDIGTAYNLQVVYIRHTLQDKCLQLREAICRKNQGACTIHPVKAKKDKSRTSLFSNRKSQVPHEVMHLKGTIFLSNFLSKSTTSYDCDTTIQVLTSKLFFSRIYIIDQGDSLVIAALVASSTKTEPIFETARITASMCAEQRHRLIK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0007970 | OsLiXu_11g0007970.01 | Chr11 | 7079374 | 7085123 | - | NAM | ||
| CDS seq | atggacaatccggtgcccagtggccagccccaacaccctctcgccggcgacggccacggccgccgccgcgccgcgccgctcacgtccactccatcgcgtccaacgccgccgaccgcaggtagctccccctcgtccccacccccggcgcgggcgtcggcttcggcgtcggcaacggctggaggctggtcccttttggccctgacccaagagccacagcttcttcagatacctaagagactcaatgccttgagggacattggcaccgcctataatctccaagtggtttacatcaggcatacgcttcaagacaagtgtcttcagctgagggaagcaatctgcagaaagaaccaaggtgcttgcactattcaccctgttaaggctaagaaagacaagagccgaacttctctctttagcaatagaaagagccaggtcccgcacgaggtcatgcatcttaaaggcacaatcttcctaagcaatttcctcagcaaatcaacgacatcatatgactgtgacacgacaatccaagtactaacttcgaaattgttcttctcccgcatatacattattgaccagggtgatagcttggttatagcagctttggtggcttcctccactaaaacagaaccaatctttgagacagcgaggattacagcctccatgtgtgctgaacaaaggcacagattgatcaaatga
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| Protein seq | MDNPVPSGQPQHPLAGDGHGRRRAAPLTSTPSRPTPPTAGSSPSSPPPARASASASATAGGWSLLALTQEPQLLQIPKRLNALRDIGTAYNLQVVYIRHTLQDKCLQLREAICRKNQGACTIHPVKAKKDKSRTSLFSNRKSQVPHEVMHLKGTIFLSNFLSKSTTSYDCDTTIQVLTSKLFFSRIYIIDQGDSLVIAALVASSTKTEPIFETARITASMCAEQRHRLIK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0229600 | RBH | 0.618510 | 0.162195 | 0.450132 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0229600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007990 | SBH | 0.000000 | 0.0 | 1.143947 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007880 | RBH | 0.000000 | 0.135169 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0000590 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008100 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008080 | SBH | 0.000000 | 3.489918 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0065150 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008110 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007930 | SBH | 0.000000 | 1.968122 | 0.000000 |
