Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0004280 | OGI:11009530 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:3172053-3173142 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaggtgatcttcttatctcctgcataattctatctgacataaaagatcaggtcaaactgtattagtgctgctaccaaactattataaaattaggatggaaaagatactagtgcagatcttgtcatatgttaataaacaataacctgattcactgaataggtgcatgtcggctttgtagttcagcttggttagatgtactcctgtataatatttctactttggttgatgtacttgaccctaatatttcagtcttctgtgcaatctttttcatggttctggacttgtagttgtccctgacaccaaaactcaggcctgaacaagtgaacatttccacttgttttgaactagtgaatgcttctgcatgtcacaactcacaactgaaactcctgagagtgtttgctaatcttgtacataaccaatagaggaaaaattcagcttctgatgtacctaaaaaacccactagtttgagatgcattttctcacagttgtggcaaaaggtcaataatgatgtgcagaagaagcacaaggttggaagaaaagatctgatgatcctcaattatagtgatcatctcctccttttacctctgaaaatgtagtattgagtttccatcatcatcatccagtcactgtcctgtatcctctgtaacctaaagtatttctccaattagtgacaacattataatggcttccctgctggttcatctgccacgtgttcacattataatcagtgccctcctttccatgagctttttgttcacaagatgtgctcacttctgaaatggagaggagcttcttctgttgtgctcacttctgttcttcatgtgaatcatatatcatcctgatgaacaatgattcatcatcagcagtagcagttacagagaccttgtgcagatgtgtggctggtgtgatgatgtgagctgtatcattcggaaggcctttttgtggggttgaattgcattggcttgatgatgaggtgtttgtttcttggcgctttttccagctgttgctgaaatggaagaggtgagaaccggccggcgcatgcatgtcgcctctcacctgctgctgcgtctgcgtgccatttggtcccat
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| CDS seq | atgggaccaaatggcacgcagacgcagcagcagaggatacaggacagtgactggatgatgatgatggaaactcaatactacattttcagaggcctgagttttggtgtcagggacaactacaagtccagaaccatgaaaaagattgcacagaagactgaaatattagggtcaagagtacatctaaccaagctgaactacaaagccgacatgcacctattcagtgaatcaggagataagaagatcacctag |
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| Protein seq | MGPNGTQTQQQRIQDSDWMMMMETQYYIFRGLSFGVRDNYKSRTMKKIAQKTEILGSRVHLTKLNYKADMHLFSESGDKKIT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0004280 | OsLiXu_11g0004280.01 | Chr11 | 3172053 | 3173142 | - | NAM | ||
| CDS seq | atgggaccaaatggcacgcagacgcagcagcagaggatacaggacagtgactggatgatgatgatggaaactcaatactacattttcagaggcctgagttttggtgtcagggacaactacaagtccagaaccatgaaaaagattgcacagaagactgaaatattagggtcaagagtacatctaaccaagctgaactacaaagccgacatgcacctattcagtgaatcaggagataagaagatcacctag
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| Protein seq | MGPNGTQTQQQRIQDSDWMMMMETQYYIFRGLSFGVRDNYKSRTMKKIAQKTEILGSRVHLTKLNYKADMHLFSESGDKKIT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g06450 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0004390 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0004380 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0004310 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0004280 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0054100 | RBH | 0.1885455 | 3.936858 | 0.904809 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0004370 | RBH | 0.0 | 0.0 | 0.326769 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0054600 | RBH | 0.167526 | 4.438063 | 1.076815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0004290 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0004360 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0004360 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004380 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G004360 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0004360 | RBH | 0.0 | 0.0 | 1.078405 |
