Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0003960 | OGI:11008800 | 13/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:2882489-2883076 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcgtcggcactacgccgtccttctccgccgcgccgcctccctgccgtctctccccctcgtggcgtccctccacgcggcggcgctccgccgaggcgccgtcctggccccgtccctcatccacgcctactccgcatgcggcgacctcgcctccgcgcgcaatctgttcgacgaattgcccccgcgggaccggacgctctccgcgcgcacggcgctggccagcgcgatgtccgctcacggccggtgccgggaggtcctcgacctcttcgccggccttgcggaggaggagatggacgacaaggcggtgaccgcggttctcgccgcgtgcgcgagggccgggatggtggacgaagggaggagggtgttcgcgacggtgaggaggaggccggctctgcagcactacacgtgcatggtggagatgctggggcgcgccggcgaggtcgaggaggcggagcgcctggtggcgcggatgggggcgcgcccggacagggtgatctgcgccgtgctcctcgccgcgtgccgggtgcacggccgcgtcgatgtggctgggagagtgcacgggttgatgcgccggtatggcattgcctga
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| CDS seq | atgcgtcggcactacgccgtccttctccgccgcgccgcctccctgccgtctctccccctcgtggcgtccctccacgcggcggcgctccgccgaggcgccgtcctggccccgtccctcatccacgcctactccgcatgcggcgacctcgcctccgcgcgcaatctgttcgacgaattgcccccgcgggaccggacgctctccgcgcgcacggcgctggccagcgcgatgtccgctcacggccggtgccgggaggtcctcgacctcttcgccggccttgcggaggaggagatggacgacaaggcggtgaccgcggttctcgccgcgtgcgcgagggccgggatggtggacgaagggaggagggtgttcgcgacggtgaggaggaggccggctctgcagcactacacgtgcatggtggagatgctggggcgcgccggcgaggtcgaggaggcggagcgcctggtggcgcggatgggggcgcgcccggacagggtgatctgcgccgtgctcctcgccgcgtgccgggtgcacggccgcgtcgatgtggctgggagagtgcacgggttgatgcgccggtatggcattgcctga
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| Protein seq | MRRHYAVLLRRAASLPSLPLVASLHAAALRRGAVLAPSLIHAYSACGDLASARNLFDELPPRDRTLSARTALASAMSAHGRCREVLDLFAGLAEEEMDDKAVTAVLAACARAGMVDEGRRVFATVRRRPALQHYTCMVEMLGRAGEVEEAERLVARMGARPDRVICAVLLAACRVHGRVDVAGRVHGLMRRYGIA |
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| Function | Pentatricopeptide repeat-containing protein At5g15340, mitochondrial [UniProtKB/Swiss-Prot:Q9LXE8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0003960 | OsLiXu_11g0003960.01 | Chr11 | 2882489 | 2883076 | + | NAM | ||
| CDS seq | atgcgtcggcactacgccgtccttctccgccgcgccgcctccctgccgtctctccccctcgtggcgtccctccacgcggcggcgctccgccgaggcgccgtcctggccccgtccctcatccacgcctactccgcatgcggcgacctcgcctccgcgcgcaatctgttcgacgaattgcccccgcgggaccggacgctctccgcgcgcacggcgctggccagcgcgatgtccgctcacggccggtgccgggaggtcctcgacctcttcgccggccttgcggaggaggagatggacgacaaggcggtgaccgcggttctcgccgcgtgcgcgagggccgggatggtggacgaagggaggagggtgttcgcgacggtgaggaggaggccggctctgcagcactacacgtgcatggtggagatgctggggcgcgccggcgaggtcgaggaggcggagcgcctggtggcgcggatgggggcgcgcccggacagggtgatctgcgccgtgctcctcgccgcgtgccgggtgcacggccgcgtcgatgtggctgggagagtgcacgggttgatgcgccggtatggcattgcctga
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| Protein seq | MRRHYAVLLRRAASLPSLPLVASLHAAALRRGAVLAPSLIHAYSACGDLASARNLFDELPPRDRTLSARTALASAMSAHGRCREVLDLFAGLAEEEMDDKAVTAVLAACARAGMVDEGRRVFATVRRRPALQHYTCMVEMLGRAGEVEEAERLVARMGARPDRVICAVLLAACRVHGRVDVAGRVHGLMRRYGIA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0158300 | RBH | 0.088973 | 0.000000 | 0.434204 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g05980 | RBH | 0.060168 | 0.0 | 0.111773 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0158300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0004050 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0004130 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0004050 | RBH | 0.0 | 1.895803 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0003980 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0003960 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0050300 | SBH | 3.3414615 | 11.1211675 | 5.6112605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0004050 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0050600 | RBH | 12.2743545 | 15.714506 | 4.814307 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0003970 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0004050 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0004050 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0004030 | RBH | 0.262453 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004070 | RBH | 0.0 | 4.716559 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G004040 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001040 | SBH | 0.968575 | 0.0 | 0.0 |
