Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0001960 | OGI:11004980 | 14/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:1503176-1507297 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cccgctgacaaaaatatacaagaaacgcgaaaacgaaatgcatcttgaagcacattgtccacgtaatgctagctgctaattaatgattatatgcatttgacatcttgaatcgtggatggagttcaggaaaagtgaaggagatatccgaaccaatcgtcaatcgatcaaacacaggctggaaccgggcatttggcacttagctgactctgttcagagaatcaactaaattgtctcacagaattgatacagaagcaatgcaacatgtatgcttgcttttgcagggtaaccatcaggggaaagcagagctggtatcctcgctctcctgctcctagattctctccgccagttctccatcatctcctctgcttcacactcgtagctctcggtcggatgagagcatcttatgcttgttcaccatttgagttgtaagggtgggacggttgggatggaggtcagctgcatgcgccaatgctgtcttcgcttcctccacctccgcagcagtagcatcctcacattggatcgttgcagtgaccctctggagcgaactgctagcaactttttcaaagccaagctgcatatgcagattgtcaaagccaggctgcatttccaccatatcttttaggaaccgtacgtagacacaaaacacaagggattcaaggcttggcatcatgatggaaggtgctactgctatgcatatgccgccgtcgttttcacggccgtgcgaatcatcaaaccaggcaaataaaaagggagaaacaaagaatctcaatttccgaaataagtagcgttgcagatcaccattccttatgcttactagcctggtgtaatctgaacacagtttgagataacagagctctggtagcctcccaagggtttccatgtcctgttcttgcaccacatgcactgacacatctagatgggtgaggttcaaaagaagtgaagagttgatccatactggtagtccagagaacttgaagcattccaagcacagctgtccaaggcgctgaggggtcacaaaacatgcttcccgtgtgatgccgcttggtaatgctgagcccAaaatacacaaagtgcggatcttgtgcagatttgctagcgattctagcaaagctctctccatgccctcatcgctaatatgaatggtacaccggagaatccttagctccctcagcttgcccagctccttcacaaactgccttgttgagacatcatcaaccggccatatcttcagctcttgcaatgaagtaagattcccgatcaaaccagctggaactgctatactgtcattgatacgtaggcacaacagttgtttcaaaaggcccacagcctccgggagctgttgtattccagtacctgacaaattcagcgtttgtagaaacttgagatctcctacttccttggggaactcatcaatacgtgtattccaaatccccagatatctcaggtggcgtaaattccctacatgctctaatctatgttttccacaagcttccccagtaacactacaatcctccaaagttaaaacgcgtagaactcgaaagtatgatgttaccacattaatatcgccgcactgagtggcactgaaggacctcactttctccaaacccacattaaccagctgagggtggttgtgctcttcaacactcctaccgtgcacagccaacctgcgagcattgctacccaccataagttgtttttgttggtcatcgctgtccaatatagtggcgaacttttcttcactcgataacgaacagaccagatcaagcaccatatcatgcacacgacaaccatatacatacccattatcttctaactccatcggttggatcatgcttctatttattagctcgttgaagtacccttccccaagctcaaataatcctatccccgttgcatgttcattctggataaaaccttcagctatccacttccatatcaaaagatttttctcgatcccatattcttcccgaaatagactcagatacagcatgcaagcctttagatgtgaaggaaggtcatagtaactaaaagacagtattcttcgagtattctctacaatgtcattgcctctttcaccaaaaccaatagaattgtacacattagaccagtcctcccctgatttacttgccaacaaactagctattgtgatgatagctaatggcacaccaccacattttttcaaaattttatcacatgcctcagttgaaagactgtctaggaatctgtcttcaccatcatttattctagaatataataatatttcagagtcatcacgagaaagtggttgcattttgtaaatatcaccgatatgcgtggcgacttcaaaaatacgagtagttaccactactctacctccacaattactatgttgcagagcacatctgatcaattcccatgatttcttatcccatatgtcatcaataacaaacaaaaacctatgcatccacatcacagtacaataacataagttagtaaccatgcctagtgggaagaatgtaaaaaacaagaataacaccaaggtggcaccgtggcaaccatttgaaagaacacacgaaaatgccactataaatcaacaatttgtagaaagtcgatctagtgtgaataaatcaaatattataaagttacaagttgtatacaactttttttaaacaatgttgatggaagaaactctttataatagccatactgtatatcagcttagaaagcatatgccgcatatcatccacaatctatcagataaaacgaactagaccttaatctataactataatagatatcaatcatattctcaatgttcttgtccaatcaacttgactgtgcctcagttacctttggatgcattttgctttatagcctaatatgtcatacccaaatgattttctcaaacaattgttcatgaccatgcgcattgacaacataaataatatgctataatgcaccagcccattaatattcttatttcagctcatctgctcatgtgtacattcaagtttaggctgtgcgtgacccaattattctattgtagtggtagtcctgcctcagtaaatttagatatgtttgtgctaccttacaacgctttatgatataattgtagcactttgggttaactttttctacacgaatcttggtcaaaagcaagcataagcatttgtgctttctgtatacaaacatgcccctacaaaaagggcgatgcaacattgaaggtgaggtcttatatgttcaggtactaaaacaaaattcacatgctgaactgctgatgaatacgtagatgttcatacctcttgttctggatgagtttccgtagttcgttgatgagctgcctttcatccaatatcatcacatttggattcatgtagtcaaaatcaataagaatatccctcaagactttcttcatgtcaggatcccgaccaaccggaacaaaagccccacagtcaaatgccagtttatttttgtcatatactgctttggaaagagtggttttgccgagtcctccaaatccaacaatagagacaatcttcattttctcgtcggaggcatgaacatcatccccaagggataatatctttacgagcttttcactctgcttttcaatgccaacaagctctgtcgtctttttgtatagcgcctgaaggcgaggatcgatggtaacaggacctgtaaccttggcgataatgttgtccaccatgtacctgtcacgccttgcagccacctcctcgactttcttgttcacgtcttggatagctccagcgatcttatggtgatgcttgcacttgttgaagaaattagccatcttcttccggaagcgcctgagcatgtgtgtgtcaagaggctcaggaccatcgatgtgcaccaagaaagcgtcgacgacgtcctccatgtcgtaggacagctctctgacatcccctgcccagagcttgaccagctcgtcgatctggtctggaggcacctcaccgaccttgaggaggacagcattcatgctctccagctcctgtgagagatgcttgatcttcttcctcacgcctttgtgcaagtcgtactcctccttgagtacctcaaccagcttggggagaaggctccctatcgcccccgtccccaactccatgctcgctggctcagtcagtt
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| CDS seq | atggagttggggacgggggcgatagggagccttctccccaagctggttgaggtactcaaggaggagtacgacttgcacaaaggcgtgaggaagaagatcaagcatctctcacaggagctggagagcatgaatgctgtcctcctcaaggtcggtgaggtgcctccagaccagatcgacgagctggtcaagctctgggcaggggatgtcagagagctgtcctacgacatggaggacgtcgtcgacgctttcttggtgcacatcgatggtcctgagcctcttgacacacacatgctcaggcgcttccggaagaagatggctaatttcttcaacaagtgcaagcatcaccataagatcgctggagctatccaagacgtgaacaagaaagtcgaggaggtggctgcaaggcgtgacaggtacatggtggacaacattatcgccaaggttacaggtcctgttaccatcgatcctcgccttcaggcgctatacaaaaagacgacagagcttgttggcattgaaaagcagagtgaaaagctcgtaaagatattatcccttggggatgatgttcatgcctccgacgagaaaatgaagattgtctctattgttggatttggaggactcggcaaaaccactctttccaaagcagtatatgacaaaaataaactggcatttgactgtggggcttttgttccggttggtcgggatcctgacatgaagaaagtcttgagggatattcttattgattttgactacatgaatccaaatgtgatgatattggatgaaaggcagctcatcaacgaactacggaaactcatccagaacaagagcatattatttatgttgtcaatgcgcatggtcatgaacaattgtttgagaaaatcatttgggtatgacatattaggctataaagcaaaatgcatccaaaggtttttgtttgttattgatgacatatgggataagaaatcatgggaattgatcagatgtgctctgcaacatagtaattgtggaggtagagtagtggtaactactcgtatttttgaagtcgccacgcatatcggtgatatttacaaaatgcaaccactttctcgtgatgactctgaaatattattatattctagaataaatgatggtgaagacagattcctagacagtctttcaactgaggcatgtgataaaattttgaaaaaatgtggtggtgtgccattagctatcatcacaatagctagtttgttggcaagtaaatcaggggaggactggtctaatgtgtacaattctattggttttggtgaaagaggcaatgacattgtagagaatactcgaagaatactgtcttttagttactatgaccttccttcacatctaaaggcttgcatgctgtatctgagtctatttcgggaagaatatgggatcgagaaaaatcttttgatatggaagtggatagctgaaggttttatccagaatgaacatgcaacggggataggattatttgagcttggggaagggtacttcaacgagctaataaatagaagcatgatccaaccgatggagttagaagataatgggtatgtatatggttgtcgtgtgcatgatatggtgcttgatctggtctgttcgttatcgagtgaagaaaagttcgccactatattggacagcgatgaccaacaaaaacaacttatggtgggtagcaatgctcgcaggttggctgtgcacggtaggagtgttgaagagcacaaccaccctcagctggttaatgtgggtttggagaaagtgaggtccttcagtgccactcagtgcggcgatattaatgtggtaacatcatactttcgagttctacgcgttttaactttggaggattgtagtgttactggggaagcttgtggaaaacatagattagagcatgtagggaatttacgccacctgagatatctggggatttggaatacacgtattgatgagttccccaaggaagtaggagatctcaagtttctacaaacgctgaatttgtcaggtactggaatacaacagctcccggaggctgtgggccttttgaaacaactgttgtgcctacgtatcaatgacagtatagcagttccagctggtttgatcgggaatcttacttcattgcaagagctgaagatatggccggttgatgatgtctcaacaaggcagtttgtgaaggagctgggcaagctgagggagctaaggattctccggtgtaccattcatattagcgatgagggcatggagagagctttgctagaatcgctagcaaatctgcacaagatccgcactttgtgtatttTgggctcagcattaccaagcggcatcacacgggaagcatgttttgtgacccctcagcgccttggacagctgtgcttggaatgcttcaagttctctggactaccagtatggatcaactcttcacttcttttgaacctcacccatctagatgtgtcagtgcatgtggtgcaagaacaggacatggaaacccttgggaggctaccagagctctgttatctcaaactgtgttcagattacaccaggctagtaagcataaggaatggtgatctgcaacgctacttatttcggaaattgagattctttgtttctccctttttatttgcctggtttgatgattcgcacggccgtgaaaacgacggcggcatatgcatagcagtagcaccttccatcatgatgccaagccttgaatcccttgtgttttgtgtctacgtacggttcctaaaagatatggtggaaatgcagcctggctttgacaatctgcatatgcagcttggctttgaaaaagttgctagcagttcgctccagagggtcactgcaacgatccaatgtgaggatgctactgctgcggaggtggaggaagcgaagacagcattggcgcatgcagctgacctccatcccaaccgtcccacccttacaactcaaatggtgaacaagcataagatgctctcatccgaccgagagctacgagtgtga
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| Protein seq | MELGTGAIGSLLPKLVEVLKEEYDLHKGVRKKIKHLSQELESMNAVLLKVGEVPPDQIDELVKLWAGDVRELSYDMEDVVDAFLVHIDGPEPLDTHMLRRFRKKMANFFNKCKHHHKIAGAIQDVNKKVEEVAARRDRYMVDNIIAKVTGPVTIDPRLQALYKKTTELVGIEKQSEKLVKILSLGDDVHASDEKMKIVSIVGFGGLGKTTLSKAVYDKNKLAFDCGAFVPVGRDPDMKKVLRDILIDFDYMNPNVMILDERQLINELRKLIQNKSILFMLSMRMVMNNCLRKSFGYDILGYKAKCIQRFLFVIDDIWDKKSWELIRCALQHSNCGGRVVVTTRIFEVATHIGDIYKMQPLSRDDSEILLYSRINDGEDRFLDSLSTEACDKILKKCGGVPLAIITIASLLASKSGEDWSNVYNSIGFGERGNDIVENTRRILSFSYYDLPSHLKACMLYLSLFREEYGIEKNLLIWKWIAEGFIQNEHATGIGLFELGEGYFNELINRSMIQPMELEDNGYVYGCRVHDMVLDLVCSLSSEEKFATILDSDDQQKQLMVGSNARRLAVHGRSVEEHNHPQLVNVGLEKVRSFSATQCGDINVVTSYFRVLRVLTLEDCSVTGEACGKHRLEHVGNLRHLRYLGIWNTRIDEFPKEVGDLKFLQTLNLSGTGIQQLPEAVGLLKQLLCLRINDSIAVPAGLIGNLTSLQELKIWPVDDVSTRQFVKELGKLRELRILRCTIHISDEGMERALLESLANLHKIRTLCILGSALPSGITREACFVTPQRLGQLCLECFKFSGLPVWINSSLLLNLTHLDVSVHVVQEQDMETLGRLPELCYLKLCSDYTRLVSIRNGDLQRYLFRKLRFFVSPFLFAWFDDSHGRENDGGICIAVAPSIMMPSLESLVFCVYVRFLKDMVEMQPGFDNLHMQLGFEKVASSSLQRVTATIQCEDATAAEVEEAKTALAHAADLHPNRPTLTTQMVNKHKMLSSDRELRV |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0001960 | OsLiXu_11g0001960.01 | Chr11 | 1503176 | 1507297 | - | NAM | ||
| CDS seq | atggagttggggacgggggcgatagggagccttctccccaagctggttgaggtactcaaggaggagtacgacttgcacaaaggcgtgaggaagaagatcaagcatctctcacaggagctggagagcatgaatgctgtcctcctcaaggtcggtgaggtgcctccagaccagatcgacgagctggtcaagctctgggcaggggatgtcagagagctgtcctacgacatggaggacgtcgtcgacgctttcttggtgcacatcgatggtcctgagcctcttgacacacacatgctcaggcgcttccggaagaagatggctaatttcttcaacaagtgcaagcatcaccataagatcgctggagctatccaagacgtgaacaagaaagtcgaggaggtggctgcaaggcgtgacaggtacatggtggacaacattatcgccaaggttacaggtcctgttaccatcgatcctcgccttcaggcgctatacaaaaagacgacagagcttgttggcattgaaaagcagagtgaaaagctcgtaaagatattatcccttggggatgatgttcatgcctccgacgagaaaatgaagattgtctctattgttggatttggaggactcggcaaaaccactctttccaaagcagtatatgacaaaaataaactggcatttgactgtggggcttttgttccggttggtcgggatcctgacatgaagaaagtcttgagggatattcttattgattttgactacatgaatccaaatgtgatgatattggatgaaaggcagctcatcaacgaactacggaaactcatccagaacaagagcatattatttatgttgtcaatgcgcatggtcatgaacaattgtttgagaaaatcatttgggtatgacatattaggctataaagcaaaatgcatccaaaggtttttgtttgttattgatgacatatgggataagaaatcatgggaattgatcagatgtgctctgcaacatagtaattgtggaggtagagtagtggtaactactcgtatttttgaagtcgccacgcatatcggtgatatttacaaaatgcaaccactttctcgtgatgactctgaaatattattatattctagaataaatgatggtgaagacagattcctagacagtctttcaactgaggcatgtgataaaattttgaaaaaatgtggtggtgtgccattagctatcatcacaatagctagtttgttggcaagtaaatcaggggaggactggtctaatgtgtacaattctattggttttggtgaaagaggcaatgacattgtagagaatactcgaagaatactgtcttttagttactatgaccttccttcacatctaaaggcttgcatgctgtatctgagtctatttcgggaagaatatgggatcgagaaaaatcttttgatatggaagtggatagctgaaggttttatccagaatgaacatgcaacggggataggattatttgagcttggggaagggtacttcaacgagctaataaatagaagcatgatccaaccgatggagttagaagataatgggtatgtatatggttgtcgtgtgcatgatatggtgcttgatctggtctgttcgttatcgagtgaagaaaagttcgccactatattggacagcgatgaccaacaaaaacaacttatggtgggtagcaatgctcgcaggttggctgtgcacggtaggagtgttgaagagcacaaccaccctcagctggttaatgtgggtttggagaaagtgaggtccttcagtgccactcagtgcggcgatattaatgtggtaacatcatactttcgagttctacgcgttttaactttggaggattgtagtgttactggggaagcttgtggaaaacatagattagagcatgtagggaatttacgccacctgagatatctggggatttggaatacacgtattgatgagttccccaaggaagtaggagatctcaagtttctacaaacgctgaatttgtcaggtactggaatacaacagctcccggaggctgtgggccttttgaaacaactgttgtgcctacgtatcaatgacagtatagcagttccagctggtttgatcgggaatcttacttcattgcaagagctgaagatatggccggttgatgatgtctcaacaaggcagtttgtgaaggagctgggcaagctgagggagctaaggattctccggtgtaccattcatattagcgatgagggcatggagagagctttgctagaatcgctagcaaatctgcacaagatccgcactttgtgtatttTgggctcagcattaccaagcggcatcacacgggaagcatgttttgtgacccctcagcgccttggacagctgtgcttggaatgcttcaagttctctggactaccagtatggatcaactcttcacttcttttgaacctcacccatctagatgtgtcagtgcatgtggtgcaagaacaggacatggaaacccttgggaggctaccagagctctgttatctcaaactgtgttcagattacaccaggctagtaagcataaggaatggtgatctgcaacgctacttatttcggaaattgagattctttgtttctccctttttatttgcctggtttgatgattcgcacggccgtgaaaacgacggcggcatatgcatagcagtagcaccttccatcatgatgccaagccttgaatcccttgtgttttgtgtctacgtacggttcctaaaagatatggtggaaatgcagcctggctttgacaatctgcatatgcagcttggctttgaaaaagttgctagcagttcgctccagagggtcactgcaacgatccaatgtgaggatgctactgctgcggaggtggaggaagcgaagacagcattggcgcatgcagctgacctccatcccaaccgtcccacccttacaactcaaatggtgaacaagcataagatgctctcatccgaccgagagctacgagtgtga
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| Protein seq | MELGTGAIGSLLPKLVEVLKEEYDLHKGVRKKIKHLSQELESMNAVLLKVGEVPPDQIDELVKLWAGDVRELSYDMEDVVDAFLVHIDGPEPLDTHMLRRFRKKMANFFNKCKHHHKIAGAIQDVNKKVEEVAARRDRYMVDNIIAKVTGPVTIDPRLQALYKKTTELVGIEKQSEKLVKILSLGDDVHASDEKMKIVSIVGFGGLGKTTLSKAVYDKNKLAFDCGAFVPVGRDPDMKKVLRDILIDFDYMNPNVMILDERQLINELRKLIQNKSILFMLSMRMVMNNCLRKSFGYDILGYKAKCIQRFLFVIDDIWDKKSWELIRCALQHSNCGGRVVVTTRIFEVATHIGDIYKMQPLSRDDSEILLYSRINDGEDRFLDSLSTEACDKILKKCGGVPLAIITIASLLASKSGEDWSNVYNSIGFGERGNDIVENTRRILSFSYYDLPSHLKACMLYLSLFREEYGIEKNLLIWKWIAEGFIQNEHATGIGLFELGEGYFNELINRSMIQPMELEDNGYVYGCRVHDMVLDLVCSLSSEEKFATILDSDDQQKQLMVGSNARRLAVHGRSVEEHNHPQLVNVGLEKVRSFSATQCGDINVVTSYFRVLRVLTLEDCSVTGEACGKHRLEHVGNLRHLRYLGIWNTRIDEFPKEVGDLKFLQTLNLSGTGIQQLPEAVGLLKQLLCLRINDSIAVPAGLIGNLTSLQELKIWPVDDVSTRQFVKELGKLRELRILRCTIHISDEGMERALLESLANLHKIRTLCILGSALPSGITREACFVTPQRLGQLCLECFKFSGLPVWINSSLLLNLTHLDVSVHVVQEQDMETLGRLPELCYLKLCSDYTRLVSIRNGDLQRYLFRKLRFFVSPFLFAWFDDSHGRENDGGICIAVAPSIMMPSLESLVFCVYVRFLKDMVEMQPGFDNLHMQLGFEKVASSSLQRVTATIQCEDATAAEVEEAKTALAHAADLHPNRPTLTTQMVNKHKMLSSDRELRV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.068150 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0130900 | RBH | 0.0 | 0.0 | 0.202724 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g03650 | RBH | 0.0 | 0.0 | 0.044565 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0130900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002010 | RBH | 0.0 | 0.0 | 0.185224 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002060 | RBH | 0.0 | 0.0 | 0.067391 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002040 | RBH | 0.0 | 0.0 | 0.580109 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0002000 | RBH | 0.0 | 0.017462 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001970 | RBH | 0.0 | 3.506722 | 0.334742 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0020900 | SBH | 1.2321585 | 14.6280725 | 14.3377745 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001980 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0092900 | SBH | 0.0229945 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0001880 | RBH | 0.0 | 0.035971 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002040 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002030 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0004640 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002030 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001980 | RBH | 0.0 | 0.570138 | 0.213697 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001940 | RBH | 0.0 | 0.000000 | 0.232361 |
