Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_10g0017900 | OGI:10063440 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr10:23000124-23003169 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tacttaccgttaggttaatcacataaacgaagctgaagctggcaaccatcaccgccgtataccttctgtgtgcgattaaccatttccgtcgccgttttaatacaaacgtaaaagataagagatcgacttgtacaagaacatctggttgtgagcctgaatgcgaaaatctactaatctccaacgaccagagaattctaagccccatacaaactctgcctcgcaacgacacattcctccgccaagctcacagctcgtactcgtaactgtcggatgcgtgaggcgacagatcccgcgcaagctgcagttcctgcagatgattgagaccaaaaacgtcagcatgcagcaacctaaagagtagcagtactgagtaccagctgcaggttaatgctgtcggcgacaacgacgacgtacatctctgaatttgaggtcgtcttcgagcatatggacgacgtgccccatggttggtctctggccgccgtcggggtcgacgcaccggagcgcggcgaggatggcgcgcttcagcaccttgggcggcggcgtctccggcagcctggggtccaccacctcctccaccctcctctcggcgaccatgcgcttcagccactcaaccaagttcacctgtggagagagcacaagcctgaataattctgtccccattgccttgaaagggttcagttcagtacattgtcagttaagtggtggctatcggctaacctctggtgctggcctagtgtaatccacaggagttctgcctgatatgatgtccatgatgagcaccccgaagctatagacgtcgctcctctcgtttagcatcccagttcttgcgtactcaggcgcaacgtacctgcatgcaacaggggagaagggagagtttgtaagtgaatgccgatcaatgaatagtatagtactctctcttagagaagacatggaaaatggaactgacccaaatgttcccatgacacgagttgtaacgtaggacctctccgagcacaggagcttggccagcccgaaatctgatactctggcgttccagtgccggtcgagaagaatgttgctggatttgacgtctcggtgaacaatcttgggctccaggccttcgtgaaggtaagccaacctgaacaggcagaagtttcacatgaccatttcagtactcggcagatggattgttcaagaaaaaccactggcaaatggcttgcctaatcataccaaccagcagtggtttttatactgaaaatgtgtcaactagcattgataaatcttagaagttttaatggctgcaaatcaagtttttcctctatgctagttagtatggataacaaaaaggcaaaaatttaccctctggctgttccaagaagtatatgcattctcatatcccaggtgagtggactgatttcatcgtcaccatggtgcagccacttatcaagattgctgttctccatatactcataaacaagcaacctgtccaacaacaactttgctttcagttcacagtggacagagagaagaaatgtgtcgtcggattaaaactgcaccatgcgcacctgcaagctccctcgctgcaataccccagtaagctgaccagattcttgtgccgaacacgcccgatcgtcgcgacctccaccttgaaatccttctctgcctgtcccctaattaagcacagaacaaatggaattcaattgattttttggttcaattctacttctactaagtaataaggtgaaattttatacatgagcaacctaatttggtaaaagtaccatctgccactaaagattgagcgggactctgtttgaaacattggtccaggatgccatgagaagcagttactgctttcgccatccgaaattcaaatctcaaatctaacaactgcctatgtttgttgcgctcaactaacggaaataatgctcttcctgatcaacagggacgttaggattgagagatttttctggcgagctaatagcggaactaggaacagacaaggttgatcgggagatcatgggaagctttgcatatcaaaatcaatccaaaacttctgattcaaaacacaaatcggaacgatctcggatgaaatattttgcttcgcgttttcaaacccatcgacatttttgaaatttgaatcggccaaacagaagtactagtcgagttttaacctgttgttgtggagattcttaatggcgacggcggtgttgtcgcggaggatgcccttgtagaccacgccgtagccgccctcgccgagcacgttctcggcggcgaacctgttcgtggcctcctccagctcccggcgcgtgtaccgccgtccccaccctcgccgcgacgcctcgggctccgccgcgtcgctgccgccgctctcggtgctccacccgcgcgtgctcccgccgctgctcgtcgccgtctcgccgctcgtcctcgcggcctccaccatgatcaggggcgccgtctgctccgccttgatgacctctatcggcggctggaacgacggcggcgggggccagcgggcggcctcctcgatgtccttgtccgacgccatcgactgctgctgcttgagagaccggttgctcctcccgtggtgcggcggagccggggccaggcgggagcatctccggcggcggcagcgccggcagaggcagacgacgatgaggagcgcgaggacgacggccgccgcggcggcggcagcgacgaggacccagaggcggaggccgagcacgggggtgcgctgcgacagcctggcgttgatgaaccccacgctccacacggacttcgtcgcctccccctcccgctcgtgctgccgatggagcgcgtggcgcggcagcggcggcggcggcggcgggtgcggctggcggcgcggggggctcttggcgacgacggggcgcgacggcggcggcggcggcggcttcacacgggtcgccatggccgcgcgcggaggcggagccgtggaagcttctcgtggtcggtttggttggctcatctgatgatctacgcatgcatcgcatgcagaggaaacagaggaagtgggattaattagagtggtttgagatagtgatagtgt
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| CDS seq | atggcgacccgtgtgaagccgccgccgccgccgccgtcgcgccccgtcgtcgccaagagccccccgcgccgccagccgcacccgccgccgccgccgccgctgccgcgccacgcgctccatcggcagcacgagcgggagggggaggcgacgaagtccgtgtggagcgtggggttcatcaacgccaggctgtcgcagcgcacccccgtgctcggcctccgcctctgggtcctcgtcgctgccgccgccgcggcggccgtcgtcctcgcgctcctcatcgtcgtctgcctctgccggcgctgccgccgccggagatgctcccgcctggccccggctccgccgcaccacgggaggagcaaccggtctctcaagcagcagcagtcgatggcgtcggacaaggacatcgaggaggccgcccgctggcccccgccgccgtcgttccagccgccgatagaggtcatcaaggcggagcagacggcgcccctgatcatggtggaggccgcgaggacgagcggcgagacggcgacgagcagcggcgggagcacgcgcgggtggagcaccgagagcggcggcagcgacgcggcggagcccgaggcgtcgcggcgagggtggggacggcggtacacgcgccgggagctggaggaggccacgaacaggttcgccgccgagaacgtgctcggcgagggcggctacggcgtggtctacaagggcatcctccgcgacaacaccgccgtcgccattaagaatctccacaacaacaggggacaggcagagaaggatttcaaggtggaggtcgcgacgatcgggcgtgttcggcacaagaatctggtcagcttactggggtattgcagcgagggagcttgcaggttgcttgtttatgagtatatggagaacagcaatcttgataagtggctgcaccatggtgacgatgaaatcagtccactcacctgggatatgagaatgcatatacttcttggaacagccagagggtacgttgcgcctgagtacgcaagaactgggatgctaaacgagaggagcgacgtctatagcttcggggtgctcatcatggacatcatatcaggcagaactcctgtggattacactaggccagcaccagaggtgaacttggttgagtggctgaagcgcatggtcgccgagaggagggtggaggaggtggtggaccccaggctgccggagacgccgccgcccaaggtgctgaagcgcgccatcctcgccgcgctccggtgcgtcgaccccgacggcggccagagaccaaccatggggcacgtcgtccatatgctcgaagacgacctcaaattcagagatgaactgcagcttgcgcgggatctgtcgcctcacgcatccgacagttacgagtacgagctgtga
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| Protein seq | MATRVKPPPPPPSRPVVAKSPPRRQPHPPPPPPLPRHALHRQHEREGEATKSVWSVGFINARLSQRTPVLGLRLWVLVAAAAAAAVVLALLIVVCLCRRCRRRRCSRLAPAPPHHGRSNRSLKQQQSMASDKDIEEAARWPPPPSFQPPIEVIKAEQTAPLIMVEAARTSGETATSSGGSTRGWSTESGGSDAAEPEASRRGWGRRYTRRELEEATNRFAAENVLGEGGYGVVYKGILRDNTAVAIKNLHNNRGQAEKDFKVEVATIGRVRHKNLVSLLGYCSEGACRLLVYEYMENSNLDKWLHHGDDEISPLTWDMRMHILLGTARGYVAPEYARTGMLNERSDVYSFGVLIMDIISGRTPVDYTRPAPEVNLVEWLKRMVAERRVEEVVDPRLPETPPPKVLKRAILAALRCVDPDGGQRPTMGHVVHMLEDDLKFRDELQLARDLSPHASDSYEYEL |
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| Function | Probable serine/threonine-protein kinase At1g01540 [UniProtKB/Swiss-Prot:Q3EDL4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_10g0017900 | OsLiXu_10g0017900.01 | Chr10 | 23000124 | 23003031 | - | NAM | ||
| CDS seq | atggcgacccgtgtgaagccgccgccgccgccgccgtcgcgccccgtcgtcgccaagagccccccgcgccgccagccgcacccgccgccgccgccgccgctgccgcgccacgcgctccatcggcagcacgagcgggagggggaggcgacgaagtccgtgtggagcgtggggttcatcaacgccaggctgtcgcagcgcacccccgtgctcggcctccgcctctgggtcctcgtcgctgccgccgccgcggcggccgtcgtcctcgcgctcctcatcgtcgtctgcctctgccggcgctgccgccgccggagatgctcccgcctggccccggctccgccgcaccacgggaggagcaaccggtctctcaagcagcagcagtcgatggcgtcggacaaggacatcgaggaggccgcccgctggcccccgccgccgtcgttccagccgccgatagaggtcatcaaggcggagcagacggcgcccctgatcatggtggaggccgcgaggacgagcggcgagacggcgacgagcagcggcgggagcacgcgcgggtggagcaccgagagcggcggcagcgacgcggcggagcccgaggcgtcgcggcgagggtggggacggcggtacacgcgccgggagctggaggaggccacgaacaggttcgccgccgagaacgtgctcggcgagggcggctacggcgtggtctacaagggcatcctccgcgacaacaccgccgtcgccattaagaatctccacaacaacaggggacaggcagagaaggatttcaaggtggaggtcgcgacgatcgggcgtgttcggcacaagaatctggtcagcttactggggtattgcagcgagggagcttgcaggttgcttgtttatgagtatatggagaacagcaatcttgataagtggctgcaccatggtgacgatgaaatcagtccactcacctgggatatgagaatgcatatacttcttggaacagccagagggtacgttgcgcctgagtacgcaagaactgggatgctaaacgagaggagcgacgtctatagcttcggggtgctcatcatggacatcatatcaggcagaactcctgtggattacactaggccagcaccagaggtgaacttggttgagtggctgaagcgcatggtcgccgagaggagggtggaggaggtggtggaccccaggctgccggagacgccgccgcccaaggtgctgaagcgcgccatcctcgccgcgctccggtgcgtcgaccccgacggcggccagagaccaaccatggggcacgtcgtccatatgctcgaagacgacctcaaattcagagatgaactgcagcttgcgcgggatctgtcgcctcacgcatccgacagttacgagtacgagctgtga
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| Protein seq | MATRVKPPPPPPSRPVVAKSPPRRQPHPPPPPPLPRHALHRQHEREGEATKSVWSVGFINARLSQRTPVLGLRLWVLVAAAAAAAVVLALLIVVCLCRRCRRRRCSRLAPAPPHHGRSNRSLKQQQSMASDKDIEEAARWPPPPSFQPPIEVIKAEQTAPLIMVEAARTSGETATSSGGSTRGWSTESGGSDAAEPEASRRGWGRRYTRRELEEATNRFAAENVLGEGGYGVVYKGILRDNTAVAIKNLHNNRGQAEKDFKVEVATIGRVRHKNLVSLLGYCSEGACRLLVYEYMENSNLDKWLHHGDDEISPLTWDMRMHILLGTARGYVAPEYARTGMLNERSDVYSFGVLIMDIISGRTPVDYTRPAPEVNLVEWLKRMVAERRVEEVVDPRLPETPPPKVLKRAILAALRCVDPDGGQRPTMGHVVHMLEDDLKFRDELQLARDLSPHASDSYEYEL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_10g0017900 | OsLiXu_10g0017900.02 | Chr10 | 23000158 | 23003169 | - | IsoSeq | ||
| CDS seq | atgcgatgcatgcgtagatcatcagatgagccaaccaaaccgaccacgagaagcttccacggctccgcctccgcgcgcggccatggcgacccgtgtgaagccgccgccgccgccgccgtcgcgccccgtcgtcgccaagagccccccgcgccgccagccgcacccgccgccgccgccgccgctgccgcgccacgcgctccatcggcagcacgagcgggagggggaggcgacgaagtccgtgtggagcgtggggttcatcaacgccaggctgtcgcagcgcacccccgtgctcggcctccgcctctgggtcctcgtcgctgccgccgccgcggcggccgtcgtcctcgcgctcctcatcgtcgtctgcctctgccggcgctgccgccgccggagatgctcccgcctggccccggctccgccgcaccacgggaggagcaaccggtctctcaagcagcagcagtcgatggcgtcggacaaggacatcgaggaggccgcccgctggcccccgccgccgtcgttccagccgccgatagaggtcatcaaggcggagcagacggcgcccctgatcatggtggaggccgcgaggacgagcggcgagacggcgacgagcagcggcgggagcacgcgcgggtggagcaccgagagcggcggcagcgacgcggcggagcccgaggcgtcgcggcgagggtggggacggcggtacacgcgccgggagctggaggaggccacgaacaggttcgccgccgagaacgtgctcggcgagggcggctacggcgtggtctacaagggcatcctccgcgacaacaccgccgtcgc
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| Protein seq | MRCMRRSSDEPTKPTTRSFHGSASARGHGDPCEAAAAAAVAPRRRQEPPAPPAAPAAAAAAAAPRAPSAARAGGGGDEVRVERGVHQRQAVAAHPRARPPPLGPRRCRRRGGRRPRAPHRRLPLPALPPPEMLPPGPGSAAPREEQPVSQAAAVDGVGQGHRGGRPLAPAAVVPAADRGHQGGADGAPDHGGGREDERRDGDEQRREHARVEHRERRQRRGGARGVAARVGTAVHAPGAGGGHEQVRRRERARRGRLRRGLQGHPPRQHRRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr10 | 23000967 | 23001459 | - | OsLiXu_10g0017900.02 | OsLiXu_10g0017900.02,OsLiXu_10g0017900.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.126185 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0533150 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g38920 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0533150 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0018120 | RBH | 0.076565 | 0.0 | 6.831048 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018510 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0017890 | RBH | 0.000000 | 0.0 | 5.879061 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0018450 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0018200 | RBH | 0.0 | 0.0 | 4.308552 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0342300 | RBH | 2.4252955 | 0.0584935 | 1.1723275 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0018100 | RBH | 0.0 | 0.0 | 0.328267 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0367000 | RBH | 2.43168 | 0.1435335 | 1.304226 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0017860 | RBH | 0.039097 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0017690 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018330 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0002090 | RBH | 1.767133 | 3.632991 | 1.799602 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018420 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G018090 | RBH | 0.0 | 0.0 | 0.741673 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018210 | RBH | 0.0 | 0.0 | 1.759758 |
