Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsLiXu_10g0016350 | OGI:10053760 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr10:21643160-21652975 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | gccgccgcacgaggacaccctcgatgccggcggcggcgacgtgctcaccttcaggctccaccccctcgccgtcttgaaattatccgaccgcatccgcgagttccagtaccaggcggcggcggcggcgcgcggcagttacagctcctcctcctcctcatcttccgggacggcggcgccggaggatcctcctcctcctcctactcggatgtctgggtgcgtgatcggggttcggcgtggtgggacggtggatgtctccgacatcttggacatcttgatcttgcacggccccgaccccgcaaccttcgaccgcgccttactggagaaggatcaggagatctgtaactaaagctgcttgctacccccaagtcctcccgtcatttttaggatccatcgattataatttgtgggtggttaatttgatttgtgtttcttgcggttcagacaagaaggccttccccgacttgtccgttctcgggtggtactccattgggaccaatgtgcacgccaccgacatgggaatccaccatggggactacaccgacatgcaaatccaccagacagtgagttttttttataaccatttaaatcaactctatttgttcgagtgctaaatatatcacactctcatttggcttgtgctttagtgtttggtcttattatgaacaaaatgtggggtattcgggtgtaattcgctgttagtatacttaccactagttgatggtagttgagatgttcagtggacaacaattctgatttaatgagtggagtgtctgctggaaatcctgttgcgagaacacccttgccccgaaacgccgtgtgtccgagtttccctttccgagcaagggcccctttaaatcgcaggattaagaaaatctagaactaggaaaaacgtaggattttgataggaatgtaagtgtaaaatagatgactgcaaaacacaggaaaaacacaggaatgaccgtttgattgaaatacaggaaaaacgcaggaattggatgagagagatagactcaaaggaaagttaccaggaggttgaaactcttgctaaattttctccaaaatctctataggatttccattccataagaattttaaaggattggatatgattcaatcctttgtttcaaagggcttcataggaaattttcctataggattaaaatcctccaaaattcctatgtttttcctccaaatcaaaggggcctaagctttgttagacacgtgcttatctacacgtagagaaagcagctattctgttgtctagcatgaccatgcacagctttagatgagttttcatgcatttttttctaccttatgaatatgtagtctgatagaaagtaattgtgtaaaagttcttgatatgaatgttccgattgctgaatacaattcatattggaagtcttttaaggcatcacccaaagctaactggctacctgctgaaagtttcttttcatcctgttggaaatcgcctaatagaaagtttcacggttgaatgtctcctagtagaaagttttaccattggaagtctcctaatagaaagtttcactgttgaaagtctcctaacagaaaattttcttctccatataaaatgaattttttaactttgatggaaatctgcttctactcttttcagaaccctaagtgaaattgattgattacacactaagaaaaagcaaaataaattattttccatgcaagccaagcagtgaatttgtgtattaaaaaaaatcccagtggctactggtttgaatgcaaacaaaaaaaaaggcgtatcatgaacttagcttgcaacaagaggaaaatgataagagttcctcgctcatgcaaacactcacatccacgtaccatatttttattcaatccattatatttcgcatatttatacttacaacataagttgataaagtcttttagtgcttgtggaaggttggggactccctcattatagtatgcgtaaagtgcatagccggtccctaaacttgtacgactgtgtcatttgagtccccaaactctcaaaatgcatatatccaaatcccaaaacttgttaaattgtgtcaatccgatcccaaactgccatgacacctccaggatcctacatggcatgccacacggacgatgatgtggcagcatcacaaattctacaccaactgacaagtgggccccaataaaaaactttttttaatatccttttctgttcattcccatcctgtccttccttcgtttctcctcttttcttcctactgcattgaccatagcaatggcctctggtcgagctgcctcttcgatgacatgaaccgacagccgcgtcgacggaggcgctgcagcgtgtgggcagcggtgccagcgcggtgatggacgcggttgtgtcctgggcatcgaagagactctagccgggagcggcgcgactgcgtgtggcttggcacgtttaccggcgaggccgaggcggggcacgcctacgatgttgcggcacagcagttctgcggccgtgacacagtcaccaacttccgcccctcgtcaagtctgacccgaaggctgccgtcgagctctgtttcttcgcctcccggtcaaaggccgaggtcatcgacatgctccgcaagcacacctacctcaaggagctcgttgttgagctcgcgacgacgtggcggcggcggcagcagggcgagctcgtggcaggagcgcccatcgcggtggcgacggcggtgcgaggcccgcagcggcggcggcgtcagccgttggcaggagctcctggaggtggtgctgtcggcggtggtggctgccgacggcggccgcggtatccggagcgtccacggcggctcacggccggtctgggtgtggccgagtgttggtcggctagcaatgtctgttggcgacagcggcggcagtgtggtcgtggcagttggcggcggcggttgctggctgcttggtggtggagggcgacggtgcagcggcggtttgcggaggcggtggctcgcgtcggtggcagcggcgacggcggccatgactgtggaggcagtggcgatgtcggcggcggggatggtgacggcgaggtggctgagcgttcggcagcagcggctgcggtggtggtgaccgtgtctgcggtcatcagaggcatggcggcctcggacggcttgccgagggcgtgggagacggctgcaactggccggcgcggcatcgtttggtggaggggtcggagaccggcttggcgcagagaagcgcagccgatggcagcggaggccggctcggcacgagaggcgcgggcggcggagatggaggccggcttggcgcgagaggcgcggccgatggagggaggccggattggcgcgggagacgcgtccggcagaggaggttggcctggcgcagataggcgcggccggcggtggaggaggcgacctaggtgtgaggaggagctgccggtgggtgtggagcagtctttggcgcacgaaggctggccggcggggggtgccggtgcagggatcccacatgtcggcagagctagtgtggtggtggagcattggtgcgtcagtcgtggattcgtaggtggtgagcggtgggtgaaaacctagtccggccttggccagaccgacaacgatggttcattccccctcctaagggcgttgtcgtgctgtctcacccctcaagggtgtttgccgggtgaaagcctagtcttggctccttggagtcctgatggacggcggcggcggtcttccgtcgcttctcttcttgaagacgtcgttttggcatccccttgggggcaatctcgcctgtgtccctttgttggtctagtggcggtcggtcccacttagcggcggccgttccggtgctagccttctcctaggcttgtgtgttggtgatgtcggtgtgtgggtggtggtataattttttctttttcctggctacgaccctccagggtcgtaatcttgtattttttttcctgctctatcaatagaacttcgcaccgtctcgtgcgagtcgttcaaaaaaaaacaagtgcgccttcacctccatctcccatcacctgttcgacaagatggtgatcccgaagcaaccagatcccgaagaggccacgttgccgcctgccaccgccgtcggtactggtgttgcgcatggtacacggcctgctcaagaacggcggtagtggcgttgtcgtcgccgcgagggtggcgaggttggtttgccgttgcgcttgccatcggcggagctgttctggccgaagcttagtgttattgccgctggctttgacttcggaattcgtcgccatcgtcgatccttatccgaaattgaggtctctctcatcttctccatgccaaactccctccttcccCtctcctccccgtgccgtcctgctgtcggagctcaccggcaaggtacccgtgtgccgcggtgccgcctacctgttcggccgccattgtgtcagcacggtgcgccgccactaggcgtccccgcccaagccgagaacacctccaagctccagctccaagttgacgccttgatgctcctaggcagccgtgcccagtcggaagctcgccggagcgccgctacttcgcatgcccccgccgcttgtacaacaaaaaaaagagagaaaaatagagaagagaaaggaaaaaaaagtgaaaggagaaagagaaaagggaggaaaagagagtttttaagtgggtcctatttgtcagtcaatgtagaggtattgatgaggccacatcagcgtccgtgtggcatgccacgttagcgccatgtaggatgccggaatggtggtggctatgttggaccaaaatgacatactttagcaagttttgggacttgaatctgtattttttgagttcggggacccagatggcacaacgacacaagtttagggaccgggtatgtagtttactcttattattgatggtcggtaaccacttgccataacctaatcaatgtaaacacattttgcttctaataaggttgtattcaaagtttaacatttgaggatacaatgttcactcctgtgagaatgaaaactgaaatttttgatgaggtaacatggcattgggatatagttttagcattagtttaagttcttggagagtctgagtttaacaagtatgcggaatgattacggctgatgaaatagccagcaataattgttatgttgggatgtacactgttcttaaactttatgtagagctctagcttgttttgttggatggatggaatggtggaaattgattttggctgagaatatatggttgagagaatatttgtcaaaatggatgtttgtttgatctaattttactccctgcataacctttcccttgtactatttttatgtagttgatggatgctaatggaacagccttttatcttctattaaatcctgcaatcaacttttcccagaaggatatccctgtgactatttatgaaagaggtaagaatcattgaatgtatcacaatgtccctgcaaaaaagaatgtattgatttctcttgatccttggttccaccctgaatcagttatgatacttgagggggtttatatgtgctgcattgactgtcaaggtttgattttgcgtatgtatcagatatgcatgacttttgtgaatctttcctcgtgtgtaaactaccaagtttagcattcaacatcttagtgaattgcatgctgattaactttattgtttagagcagcaaatgatagttatttagcgagctgaagattaactttattttgcttctgcaatttcaagtgttgtgccattccaatgggagtcccccggtcatctttgtccaaggaaactatacagttgaagtttgtattctccccatgtgtttgtttagttacaaatactacttacaaacactacaagcatgttttattgaagattgtaggggtagagaggatatctttagaccatgctgattttgtctatccaagtccatgcgtagtcttcgatgttcttgcaccacctctttgaaaagagtaagtacaaattttatttccttcctatgagatatgacttgaatcaccttacaagtaaatgtgggatataaaacttcacaaacaaaacaagtttaatactgtggggctgtttggtaggttcagtgttttgggctgtgttgcacagccccaccatttggctagagtaggcatagctttgtgctcgccatttttgaatgcgaacaaacgctgttgcaggtaactactttgtgctagctacagccgctttaggctatgtaaatatagatttgtttcctcttcttgtcacatatgccttgaatctacggaaatgctatataccgggatcccgttgggatgggatcccttcgtccccttgcctaatccaaagaggagtgagagctgagcgcacgcctgagccatgaggaggaggtggctgcccgcgaggacctccggcgagggccggggaagaggacccgctcgacgagaggaggacgcggccgccagcgacgagccctgcgcagtgagctcgaggaccttgtctgggtcgcgtcgaggcaatggcgcgtcgcggccgagccggtggcaggggagacatcgacgaagagagggagggcggctgcggccggagctacgggaggggcggctgcggctggagctacgggaggggcagcggcggtagtagccggagctgggaaagggagcggcggcggcagtcggagccatgggagggaggggcggcggtggtggtagccgggggagggagcggcggcggtggtagccggagccagggggagggaggggcggcggtggttggagttacgggaggaaggggcagggcgacagcggtagccaaagccgagaaagggagcggcagcggtggctagagccaggggaggaaggggcggtagtggttgttggcgtcagcgccgggtaggtgtccggcttctgatacctattagaaatcacctgatatctagtaagtatcgcctgatatctcataggtatcacttgataagaatcgtatgataccttacaggtatcacctgatacttcgcaagtatcacatgatacgtgataggaatcacctaataccttataggggtatcacctgatacctcgcaagtatcgcctgatacctaacatgtatcaggtataaccatcaagtatcaagtaattcctaccacgtatcaggtgatacttgcgaggtatcagatgatatctatcaagtatcatgcgattcttaccacgtatcaggtgattacttccgaggtatcagatgatacctatcaggtatcatgcgattcgtaccacgtagagggtgatacttgcaaggtatcaggtcctgatacggtatccggtatcgggtgatacctaccaggtatcgtgcgattctaccacgtatcagacgattcttatcacgtatcaggcgatactcgcaaggtatcatgtgatacctatcaggtatcacgcgatttctacgacgtatcggggtgatacttgcgaggtatcatatgatacctactagatatcaggagctgggcatcgaggcgtcgttgccggtggccgcatcctcccccgtccacgctccacaccgaacccgaacctcgtcgccggcagccgcatcctcccccgtccacggtccacatcggagctcatcgccggcgaccgcatcctccgtcgggagctcgtcaccggcagccgcatccgtcgtccacgcctcagccggcggccgcgtcctccacgccgaagctcgtcgccggtgtcgtcgccatcaccacacaggatcctccaccgtccacgccccacgtcaaagctcgtcgccggcgccatctttatcaccaacaggatcctttgccgtacatgtgaccatgccccacgccggagctcgccggcggccgtgtccgtgccgccggtgtcagcctcgtctgcgctactcccacggaggcccgcgctctcgcgtctgagggaggtggagagggagcgatcccgttgggacagtatcccaacgggattccggtatatagcagccccctgaatctaaattactaaatttataaaatcgcaacaaaacaggctaaattactaaattactttggtcttgtacttgcagaaaaaatgcatttaggacgatgctgtttgaaaccccttcgggatttgcaatgttccgtgtttcagatgttttgtttagatatcctgaggtatgtataacttttcattcaccctagtgtgatgcataattcatttttcttctgttacatttaggccctacaccttatctgattttcctttccttttgtaggacatatggtcgagttttactgatccacgtaccgcacaacaggtacatttttaactcctaaatttcctttcatgctttttgtttgtttatatctatttatcgatttattgttttttgcacctttactatctatgtacatcctaaccattactgtttttttttgcacctttactgtaaaagtacatcctaagccaactaattattgctttattattttttgcatcttaactgtacatgtaaatcctaagcctttaaatgtgtttcatacaattctatttgtatgtcatttgttctcttggttttattaagatcctaagcctttaaatgcatctatttgtaggctgttcgtaccattggttttattgaggttggtaacaaatctcttgtatgggataaggatattggtcctggcgaggatttagaacaatttatcctaaaattcccaattacaaaatcattggttgttccaaacgcacagcttaaattcgttattgagaaaaaacttgtaagtttacatctaccctaatgtattttaatgttgatgtttatttaatttttttgttagtgtggaattattaatgtttccctgttatatattgcttttttcagaacattggctgttggtttaatgggcgtattgttcctgagttgatttggggactaaattatgccctggatgaatttgtgcctcaagagaagggcaacctatcaaatgaatgccattttccactgagcaagcaattgcatgagcagttaaaagcatatggatttagtatctcaccacaattagtatgttttctcctttgctaatattgttattattctctgctgaccatccttttattgttttcttccttggtctgttgtgttaccttatttatttatttattgttttgtgttaccttatccttttattgtttaatcccttaaaatatttgctactgtactatctgttgtgttaccttacccattattgtttaatcccttgcatattgcttgctattgttgtgttgccttattattttatccttttcattttagattaatagagagtttataaccagtttcggttacttaaattatctggaacgtacttcaaagaacatttccggggatttacaccagaaatttgatcgtttcttttgtggacttgagatgtctgagggagtgtttgtaaaagttgttgcggaccgtctctgttccatggaggtcagtagatttgctaaaagcaaatagtactaataattaagtggtggctactgatgaacaatttattttctttgttttctgtaggaagtggcatcaacaccaggcagacgagaggcattgagcaacgctgaatttcttttgacggttcctaagaagaagtataacacattatctcgtcttaagcgtatggaggcagaagttaggggttcagggccttgggttttcgtagctgtttttgcagtggccttcggggttatatggaaggattgcgcattgcaatgaagcgagcaaattagaactgggcaataggaccaatgaggctaaattaggatccgtatatatggtgacaacttttgtgatctaaagtgaccagtaaac
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CDS seq | atgtctgggtgcgtgatcggggttcggcgtggtgggacggtggatgtctccgacatcttggacatcttgatcttgcacggccccgaccccgcaaccttcgaccgcgccttactggagaaggatcaggagatctacaagaaggccttccccgacttgtccgttctcgggtggtactccattgggaccaatgtgcacgccaccgacatgggaatccaccatggggactacaccgacatgcaaatccaccagacattgatggatgctaatggaacagccttttatcttctattaaatcctgcaatcaacttttcccagaaggatatcccttgttgtgccattccaatgggagtcccccggtcatctttgtccaaggaaactatacagttgaaaaaaaatgcatttaggacgatgctgtttgaaaccccttcgggatttgcaatgttccgtgtttcagatgttttgtttagatatcctgaggacatatggtcgagttttactgatccacgtaccgcacaacaggctgttcgtaccattggttttattgaggttggtaacaaatctcttgtatgggataaggatattggtcctggcgaggatttagaacaatttatcctaaaattcccaattacaaaatcattggttgttccaaacgcacagcttaaattcgttattgagaaaaaacttaacattggctgttggtttaatgggcgtattgttcctgagttgatttggggactaaattatgccctggatgaatttgtgcctcaagagaagggcaacctatcaaatgaatgccattttccactgagcaagcaattgcatgagcagttaaaagcatatggatttagtatctcaccacaattaattaatagagagtttataaccagtttcggttacttaaattatctggaacgtacttcaaagaacatttccggggatttacaccagaaatttgatcgtttcttttgtggacttgagatgtctgagggagtgtttgtaaaagttgttgcggaccgtctctgttccatggaggaagtggcatcaacaccaggcagacgagaggcattgagcaacgctgaatttcttttgacggttcctaagaagaagtataacacattatctcgtcttaagcgtatggaggcagaagttaggggttcagggccttgggttttcgtagctgtttttgcagtggccttcggggttatatggaaggattgcgcattgcaatga
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Protein seq | MSGCVIGVRRGGTVDVSDILDILILHGPDPATFDRALLEKDQEIYKKAFPDLSVLGWYSIGTNVHATDMGIHHGDYTDMQIHQTLMDANGTAFYLLLNPAINFSQKDIPCCAIPMGVPRSSLSKETIQLKKNAFRTMLFETPSGFAMFRVSDVLFRYPEDIWSSFTDPRTAQQAVRTIGFIEVGNKSLVWDKDIGPGEDLEQFILKFPITKSLVVPNAQLKFVIEKKLNIGCWFNGRIVPELIWGLNYALDEFVPQEKGNLSNECHFPLSKQLHEQLKAYGFSISPQLINREFITSFGYLNYLERTSKNISGDLHQKFDRFFCGLEMSEGVFVKVVADRLCSMEEVASTPGRREALSNAEFLLTVPKKKYNTLSRLKRMEAEVRGSGPWVFVAVFAVAFGVIWKDCALQ |
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Function | COP9 signalosome complex subunit 6 [UniProtKB/Swiss-Prot:Q6ZKM2] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsLiXu_10g0016350 | OsLiXu_10g0016350.01 | Chr10 | 21643160 | 21652975 | + | NAM | ||
CDS seq | atgtctgggtgcgtgatcggggttcggcgtggtgggacggtggatgtctccgacatcttggacatcttgatcttgcacggccccgaccccgcaaccttcgaccgcgccttactggagaaggatcaggagatctacaagaaggccttccccgacttgtccgttctcgggtggtactccattgggaccaatgtgcacgccaccgacatgggaatccaccatggggactacaccgacatgcaaatccaccagacattgatggatgctaatggaacagccttttatcttctattaaatcctgcaatcaacttttcccagaaggatatcccttgttgtgccattccaatgggagtcccccggtcatctttgtccaaggaaactatacagttgaaaaaaaatgcatttaggacgatgctgtttgaaaccccttcgggatttgcaatgttccgtgtttcagatgttttgtttagatatcctgaggacatatggtcgagttttactgatccacgtaccgcacaacaggctgttcgtaccattggttttattgaggttggtaacaaatctcttgtatgggataaggatattggtcctggcgaggatttagaacaatttatcctaaaattcccaattacaaaatcattggttgttccaaacgcacagcttaaattcgttattgagaaaaaacttaacattggctgttggtttaatgggcgtattgttcctgagttgatttggggactaaattatgccctggatgaatttgtgcctcaagagaagggcaacctatcaaatgaatgccattttccactgagcaagcaattgcatgagcagttaaaagcatatggatttagtatctcaccacaattaattaatagagagtttataaccagtttcggttacttaaattatctggaacgtacttcaaagaacatttccggggatttacaccagaaatttgatcgtttcttttgtggacttgagatgtctgagggagtgtttgtaaaagttgttgcggaccgtctctgttccatggaggaagtggcatcaacaccaggcagacgagaggcattgagcaacgctgaatttcttttgacggttcctaagaagaagtataacacattatctcgtcttaagcgtatggaggcagaagttaggggttcagggccttgggttttcgtagctgtttttgcagtggccttcggggttatatggaaggattgcgcattgcaatga
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Protein seq | MSGCVIGVRRGGTVDVSDILDILILHGPDPATFDRALLEKDQEIYKKAFPDLSVLGWYSIGTNVHATDMGIHHGDYTDMQIHQTLMDANGTAFYLLLNPAINFSQKDIPCCAIPMGVPRSSLSKETIQLKKNAFRTMLFETPSGFAMFRVSDVLFRYPEDIWSSFTDPRTAQQAVRTIGFIEVGNKSLVWDKDIGPGEDLEQFILKFPITKSLVVPNAQLKFVIEKKLNIGCWFNGRIVPELIWGLNYALDEFVPQEKGNLSNECHFPLSKQLHEQLKAYGFSISPQLINREFITSFGYLNYLERTSKNISGDLHQKFDRFFCGLEMSEGVFVKVVADRLCSMEEVASTPGRREALSNAEFLLTVPKKKYNTLSRLKRMEAEVRGSGPWVFVAVFAVAFGVIWKDCALQ
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0622900 | SBH | 0.223030 | 0.432705 | 0.000000 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g36229 | RBH | 0.000000 | 0.0 | 0.041192 |
Nipponbare | IRGSP 1.0 | RAP-db | Os12g0622900 | SBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0016570 | RBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016900 | RBH | 0.0 | 0.0 | 0.000000 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0016320 | RBH | 0.0 | 0.0 | 0.230066 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0016800 | RBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0016560 | RBH | 0.0 | 0.0 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0016480 | RBH | 0.0 | 0.0 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0343900 | RBH | 0 | 0 | 0.0041005 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0016240 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0016120 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016670 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0062290 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016760 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G016380 | RBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0016540 | SBH | 0.367220 | 0.0 | 0.386277 |