Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_10g0011440 | OGI:10050810 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr10:17210750-17215970 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cgagccgccgcgtcgtcgtctccgccgccgatccgccccgccgccgccgccgcagatggcggcgcggaggctgaccagccgcgtcgccgtcgtggacgaggaccggtgcaagccgaacaagtgcgggcaggagtgcaggaggagctgccccgtcgtcaagatcggtaaaaagcttaaaaaccatgggatctcctcgtgatttttgattcttgttttttttctccttacctcgccggaatttctatagatttctcatctagtctccaacccgatcagatctgacattcagggttgttgtacgtagatgatggttgatttgattgtgtcgagttatttctggcacggaaattgcgtcctcacacgatcaatctgtcgaattgtgtgtggttttgtttcttgagcagggaagcattgcatcgagattggtcccaggtccaagtctgcactcatctctgaagaactctgcatcggctgcggtatttgcgtcaaggtattataatactgtgatcgattattcgcaatgtgtgtcccgctaagctaaaaccctatataggatcaatcttctcgcttgtgcgatgttgatttgtttcttcagaagtgcccatttggtgccatcaccatcatcaaccttccaaaggaattggacaaagacaccacccatcgctttggccaaaacagcttcaaattgcacaggtactcttcttccatctcaagatcaaggtcctaatttcaaatctccataagagtgaatttcggattggattgtttgaggggctaagttcccaatttaaatggttgcatatatccgattggatgtagaggccggtaaaaattatccttctgtaaaaaaagaagatctgaccctgttcttttcagattattcaccggattatcgattattcttctactgcattgtttggaccccttgttattaagttattttgttaagtatatctattgaagtatttaatttatcactataatcaagtagataatccgttgtaataatccgctcaataatctaaattaaactaggcacagactattactgattcacctcttcttgtaggctgccggtcccaatacctggtcaagttttgggccttgttgggatcaatgggattggcaagtccacagcacttaacatcttagctggacagatcaagcctaacttgggaagatatgatgtaatctctgccttcacttttcatatcaactgcacaaagatgtttacttagctctacatttcttgttcttctcctttctttgcaggatccacctgattggcatgaaatccttgcgtacttccatgggtctgaacttcagaattacttcaagcgtatggtcgaggaaaacctcaaggtgcatgtttttttactcgattgcctttcacccttaatgaagtgtttctgcactgtatcatcatgtaaaagaaactgctgcaatacatgcaaatcatcgatgaaatcatgcattttttttctagcaatccacctatgcttttagtcatcaagtgtcatcaagtgtagtgcttttctcaccttttgtactcccctctgtacagcctatcatgaagcctcaggttgagatcatgcacaaaaaccggaattcttttcaagtaagtgtaggccaactacttgaccggaaagatgagaagggtatgaaagatcagctgtgcaacggcctccaattgaacgaagttattgaccgaaaagtggcaaaactttctggtggtgagctccaaagagttggaatagcagcagctgccctgcaaagcgcggatgtttacatgtttgatgagccatcaagttatcttgatgttaagcagaggcttaatgctgcacgagtcataaagtccctgcttagaacaaacaggtaatttgtaaccttctttcatgattaatcttactacttttttgactgatagcttcaagaaatttaccatcatttgcctccctaattttgttttcagctatgttatcgtggtggaacatgacttgagtgtcttagattacatgtccgactatatttgctgcttatatgggtaacctggagcttatggtgttgttacgctgccattttcggttcgagaaggtatcaatattttcctggctggatttattccaacagaaaatcttcggtttcgagatgaatctcttacattcaacgtaagctaacatatgcacataggatttgagatcatttttcagtgatgaaactttcttctttactatattcgtattgtcctttcagattgcagatgcccaggaggatgctgagattaagacatatcagcggtacaagtaccctaccatgagcaaaacaattggtaacttcaagctcactgtcatggaaggtgaattcactgattctcagattgttgtgatgcttggtgagaacggaacagggaagaccacattcatcaagatgctggtacatctctctctcaccctttcctccacctcccatctctctgtcactcttatgagttcaagtacctcaaatgatacaaatagatactttgcactctagatttatctaccattattcaaggttggaataagcatttatagcagtggtatgcacaatgttgtgcctgcctcagcaattttatagattgatttgtgtcaaaaattgctgttcgcttagctaatgtgaacccggtggtgctgaaaacctaatggtatggttgacaatgatgactttggtttaatgtaatttatttttctttagtttctatatttagcagtcgtctaaaagcttattagaatattactaccagctttcttaaagtgtgtgaattttgttttcttacgatattaagggttttatacttgtctttctgatgatgatgcaaatatttcttccaattgcacatataaagatttaagttatatctgtttccttgtcttaacaactattagcaatccaatttgcactcgatagttggagcattcagtatcctatgttcactgtttatcatgactcgacaggccggggtggagaaaccagacactgtggacggaattgatattgaagttcctgaattttgtgtgtcctacaagccacagaagcttgcatcaacttaccagggtacagtgaggcaatttcttcatgagaaaataagggattcatacactcatcctcagtttgtgtccgatgtcatgaagccactaaaaatgcaacaactcatggaccaggaggttcagcatttatcgtgtggacagctccagagagttgcattatgcatttgtcttggaaaggtattgtccaattttacctcaactttgcgttagtaggtatctgaaattgaatgctatttacgggaataaactctatactatttccatgctctattgtttctaaaagatccagggaccagggtatgccgtttttgcatgttgaatataccaaatgtctttctctcatgttagtatagtgcatgttaggtttaaattctagcttaatgttttggatacttataccgttatacgcaaatatttattcagactaaggatgcaaatgctgtcagcttatggatactaacttcttggttgttttttccagcctgcagatatttatttgattgatgaaccaagcgcatctctcgattcagagcagcgtcttgttgcctcaaaggttatcaaaagatttatcatgcatgcaaagaaaactgcgtttattgtcgagcatgatttcattatggcaacctacttagccgacagggttatcgtctacgagggacagcctgctgttgactgtactgccaatgcaccacagtctttgctatccgggatgaataagttcttatcagtaagtgcagccatcatccatcaaccaagttataaacttataataacttactataatagtactaactcaagtttgtttcttctttactaacttcatctttgtttccctgccctaattatttctctcttttgttaattgtcattgtggatttgtggcagcatcttgagattacttttagaagagatccaaccaactttaggccacggataaacaaactggattctgcaaaagacagggaacagaagtctgcaggatcctactattacctctgaaagtgggcacaattgttgatactttgctactaccactgtatagcattgtgcctatggtgcttgcagttgagggaacaagagcgggttcggaaaatggggcggagcggaacaggaaggaagccatgtttggaccatttcatggaacaagtaagaagataggacaacacaaacaagagcaggaacatggtaacctcttgtggaatctactgaaatcacacagaggaaatgcaggaactgctgaggtggttaaatcagatcaaggatcctacaccaaaagtagtttggagatggattacacgatggcgcggagcattatgtcggtagggaatccaaaattctacaaaattaggcatgattgcactataggtgtttaggccttgttgagaattatcttatgctcttttgtcaacttttgtgcaggtcttcagacacaaggaattgcagaatgatcagaggtccccagccttttagaatgcctcctagtatgcatgatggtaaaggaattctctactggtaggaagtccataattccaaaaaatgttaagcattaccagcattacgcatttacgcctcttatgctgatttatcaaattttaagcaggacttcagcctcagcgatcgcaggacgcgatgagatgtcgtgaagtcatcaatgccacggcggataatgtttgcgggagtttggtcaagaagtgaaagaacttcatgggatttcgtttgttgctggtttttagactttagaatgctatttgggtttatggaatgttttgtgaacttctgagatgttttatcatgtggcgcgccaggttttttgtcccatagattgtattcgagatttgaatacaaacagtgggttttcctggcgccttgaaccagcaatttatttgctatatgctggacttgatttaactaaaaacgagtattgagttgttttatatggttggtgcgtttgttttgttctgggaatccaggagtggtcaggttcacctgtgaaatctacttcagtaaaatgtgaccaaattgagtattatactattattttatactatttgagtgtactgttctggaatcttaaaagttataaatgctggatcctcaatcttaatattcaaaactgttcaatttgaccattcatc
More
|
||||||||||
| CDS seq | atggcggcgcggaggctgaccagccgcgtcgccgtcgtggacgaggaccggtgcaagccgaacaagtgcgggcaggagtgcaggaggagctgccccgtcgtcaagatcgggaagcattgcatcgagattggtcccaggtccaagtctgcactcatctctgaagaactctgcatcggctgcggtatttgcgtcaagaagtgcccatttggtgccatcaccatcatcaaccttccaaaggaattggacaaagacaccacccatcgctttggccaaaacagcttcaaattgcacaggctgccggtcccaatacctggtcaagttttgggccttgttgggatcaatgggattggcaagtccacagcacttaacatcttagctggacagatcaagcctaacttgggaagatatgatgatccacctgattggcatgaaatccttgcgtacttccatgggtctgaacttcagaattacttcaagcgtatggtcgaggaaaacctcaagcctatcatgaagcctcaggttgagatcatgcacaaaaaccggaattcttttcaagtaagtgtaggccaactacttgaccggaaagatgagaagggtatgaaagatcagctgtgcaacggcctccaattgaacgaagttattgaccgaaaagtggcaaaactttctggtggtgagctccaaagagttggaatagcagcagctgccctgcaaagcgcggatgtttacatgtttgatgagccatcaagttatcttgatgttaagcagaggcttaatgctgcacgagtcataaagtccctgcttagaacaaacagctatgttatcgtggtggaacatgacttgagtattacatgtccgactatatttgctgcttatatgggtaacctggagcttatggtgttgttacgctgccattttcggttcgagaagattgcagatgcccaggaggatgctgagattaagacatatcagcggtacaagtaccctaccatgagcaaaacaattggtaacttcaagctcactgtcatggaaggtgaattcactgattctcagattgttgtgatgcttggtgagaacggaacagggaagaccacattcatcaagatgctggccggggtggagaaaccagacactgtggacggaattgatattgaagttcctgaattttgtgtgtcctacaagccacagaagcttgcatcaacttaccagggtacagtgaggcaatttcttcatgagaaaataagggattcatacactcatcctcagtttgtgtccgatgtcatgaagccactaaaaatgcaacaactcatggaccaggaggttcagcatttatcgtgtggacagctccagagagttgcattatgcatttgtcttggaaagcctgcagatatttatttgattgatgaaccaagcgcatctctcgattcagagcagcgtcttgttgcctcaaaggttatcaaaagatttatcatgcatgcaaagaaaactgcgtttattgtcgagcatgatttcattatggcaacctacttagccgacagggttatcgtctacgagggacagcctgctgttgactgtactgccaatgcaccacagtctttgctatccgggatgaataagttcttatcacatcttgagattacttttagaagagatccaaccaactttaggccacggataaacaaactggattctgcaaaagacagggaacagaagtctgcaggatcctactattacctctga
More
|
||||||||||
| Protein seq | MAARRLTSRVAVVDEDRCKPNKCGQECRRSCPVVKIGKHCIEIGPRSKSALISEELCIGCGICVKKCPFGAITIINLPKELDKDTTHRFGQNSFKLHRLPVPIPGQVLGLVGINGIGKSTALNILAGQIKPNLGRYDDPPDWHEILAYFHGSELQNYFKRMVEENLKPIMKPQVEIMHKNRNSFQVSVGQLLDRKDEKGMKDQLCNGLQLNEVIDRKVAKLSGGELQRVGIAAAALQSADVYMFDEPSSYLDVKQRLNAARVIKSLLRTNSYVIVVEHDLSITCPTIFAAYMGNLELMVLLRCHFRFEKIADAQEDAEIKTYQRYKYPTMSKTIGNFKLTVMEGEFTDSQIVVMLGENGTGKTTFIKMLAGVEKPDTVDGIDIEVPEFCVSYKPQKLASTYQGTVRQFLHEKIRDSYTHPQFVSDVMKPLKMQQLMDQEVQHLSCGQLQRVALCICLGKPADIYLIDEPSASLDSEQRLVASKVIKRFIMHAKKTAFIVEHDFIMATYLADRVIVYEGQPAVDCTANAPQSLLSGMNKFLSHLEITFRRDPTNFRPRINKLDSAKDREQKSAGSYYYL |
||||||||||
| Function | ABC transporter E family member 2 [UniProtKB/Swiss-Prot:Q8LPJ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_10g0011440 | OsLiXu_10g0011440.02 | Chr10 | 17210750 | 17215970 | + | NAM | ||
| CDS seq | atggcggcgcggaggctgaccagccgcgtcgccgtcgtggacgaggaccggtgcaagccgaacaagtgcgggcaggagtgcaggaggagctgccccgtcgtcaagatcgggaagcattgcatcgagattggtcccaggtccaagtctgcactcatctctgaagaactctgcatcggctgcggtatttgcgtcaagaagtgcccatttggtgccatcaccatcatcaaccttccaaaggaattggacaaagacaccacccatcgctttggccaaaacagcttcaaattgcacaggctgccggtcccaatacctggtcaagttttgggccttgttgggatcaatgggattggcaagtccacagcacttaacatcttagctggacagatcaagcctaacttgggaagatatgatgatccacctgattggcatgaaatccttgcgtacttccatgggtctgaacttcagaattacttcaagcgtatggtcgaggaaaacctcaagcctatcatgaagcctcaggttgagatcatgcacaaaaaccggaattcttttcaagtaagtgtaggccaactacttgaccggaaagatgagaagggtatgaaagatcagctgtgcaacggcctccaattgaacgaagttattgaccgaaaagtggcaaaactttctggtggtgagctccaaagagttggaatagcagcagctgccctgcaaagcgcggatgtttacatgtttgatgagccatcaagttatcttgatgttaagcagaggcttaatgctgcacgagtcataaagtccctgcttagaacaaacagctatgttatcgtggtggaacatgacttgagtattacatgtccgactatatttgctgcttatatgggtaacctggagcttatggtgttgttacgctgccattttcggttcgagaagattgcagatgcccaggaggatgctgagattaagacatatcagcggtacaagtaccctaccatgagcaaaacaattggtaacttcaagctcactgtcatggaaggtgaattcactgattctcagattgttgtgatgcttggtgagaacggaacagggaagaccacattcatcaagatgctggccggggtggagaaaccagacactgtggacggaattgatattgaagttcctgaattttgtgtgtcctacaagccacagaagcttgcatcaacttaccagggtacagtgaggcaatttcttcatgagaaaataagggattcatacactcatcctcagtttgtgtccgatgtcatgaagccactaaaaatgcaacaactcatggaccaggaggttcagcatttatcgtgtggacagctccagagagttgcattatgcatttgtcttggaaagcctgcagatatttatttgattgatgaaccaagcgcatctctcgattcagagcagcgtcttgttgcctcaaaggttatcaaaagatttatcatgcatgcaaagaaaactgcgtttattgtcgagcatgatttcattatggcaacctacttagccgacagggttatcgtctacgagggacagcctgctgttgactgtactgccaatgcaccacagtctttgctatccgggatgaataagttcttatcacatcttgagattacttttagaagagatccaaccaactttaggccacggataaacaaactggattctgcaaaagacagggaacagaagtctgcaggatcctactattacctctga
More
|
|||||||
| Protein seq | MAARRLTSRVAVVDEDRCKPNKCGQECRRSCPVVKIGKHCIEIGPRSKSALISEELCIGCGICVKKCPFGAITIINLPKELDKDTTHRFGQNSFKLHRLPVPIPGQVLGLVGINGIGKSTALNILAGQIKPNLGRYDDPPDWHEILAYFHGSELQNYFKRMVEENLKPIMKPQVEIMHKNRNSFQVSVGQLLDRKDEKGMKDQLCNGLQLNEVIDRKVAKLSGGELQRVGIAAAALQSADVYMFDEPSSYLDVKQRLNAARVIKSLLRTNSYVIVVEHDLSITCPTIFAAYMGNLELMVLLRCHFRFEKIADAQEDAEIKTYQRYKYPTMSKTIGNFKLTVMEGEFTDSQIVVMLGENGTGKTTFIKMLAGVEKPDTVDGIDIEVPEFCVSYKPQKLASTYQGTVRQFLHEKIRDSYTHPQFVSDVMKPLKMQQLMDQEVQHLSCGQLQRVALCICLGKPADIYLIDEPSASLDSEQRLVASKVIKRFIMHAKKTAFIVEHDFIMATYLADRVIVYEGQPAVDCTANAPQSLLSGMNKFLSHLEITFRRDPTNFRPRINKLDSAKDREQKSAGSYYYL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_10g0011440 | OsLiXu_10g0011440.01 | Chr10 | 17210750 | 17215970 | + | NAM | ||
| CDS seq | atggcggcgcggaggctgaccagccgcgtcgccgtcgtggacgaggaccggtgcaagccgaacaagtgcgggcaggagtgcaggaggagctgccccgtcgtcaagatcgggaagcattgcatcgagattggtcccaggtccaagtctgcactcatctctgaagaactctgcatcggctgcggtatttgcgtcaagaagtgcccatttggtgccatcaccatcatcaaccttccaaaggaattggacaaagacaccacccatcgctttggccaaaacagcttcaaattgcacaggctgccggtcccaatacctggtcaagttttgggccttgttgggatcaatgggattggcaagtccacagcacttaacatcttagctggacagatcaagcctaacttgggaagatatgatgatccacctgattggcatgaaatccttgcgtacttccatgggtctgaacttcagaattacttcaagcgtatggtcgaggaaaacctcaagcctatcatgaagcctcaggttgagatcatgcacaaaaaccggaattcttttcaagtaagtgtaggccaactacttgaccggaaagatgagaagggtatgaaagatcagctgtgcaacggcctccaattgaacgaagttattgaccgaaaagtggcaaaactttctggtggtgagctccaaagagttggaatagcagcagctgccctgcaaagcgcggatgtttacatgtttgatgagccatcaagttatcttgatgttaagcagaggcttaatgctgcacgagtcataaagtccctgcttagaacaaacagctatgttatcgtggtggaacatgacttgagtattacatgtccgactatatttgctgcttatatgggtaacctggagcttatggtgttgttacgctgccattttcggttcgagaagattgcagatgcccaggaggatgctgagattaagacatatcagcggtacaagtaccctaccatgagcaaaacaattggtaacttcaagctcactgtcatggaaggtgaattcactgattctcagattgttgtgatgcttggtgagaacggaacagggaagaccacattcatcaagatgctggccggggtggagaaaccagacactgtggacggaattgatattgaagttcctgaattttgtgtgtcctacaagccacagaagcttgcatcaacttaccagggtacagtgaggcaatttcttcatgagaaaataagggattcatacactcatcctcagtttgtgtccgatgtcatgaagccactaaaaatgcaacaactcatggaccaggaggttcagcatttatcgtgtggacagctccagagagttgcattatgcatttgtcttggaaagcctgcagatatttatttgattgatgaaccaagcgcatctctcgattcagagcagcgtcttgttgcctcaaaggttatcaaaagatttatcatgcatgcaaagaaaactgcgtttattgtcgagcatgatttcattatggcaacctacttagccgacagggttatcgtctacgagggacagcctgctgttgactgtactgccaatgcaccacagtctttgctatccgggatgaataagttcttatcacatcttgagattacttttagaagagatccaaccaactttaggccacggataaacaaactggattctgcaaaagacagggaacagaagtctgcaggatcctactattacctctga
More
|
|||||||
| Protein seq | MAARRLTSRVAVVDEDRCKPNKCGQECRRSCPVVKIGKHCIEIGPRSKSALISEELCIGCGICVKKCPFGAITIINLPKELDKDTTHRFGQNSFKLHRLPVPIPGQVLGLVGINGIGKSTALNILAGQIKPNLGRYDDPPDWHEILAYFHGSELQNYFKRMVEENLKPIMKPQVEIMHKNRNSFQVSVGQLLDRKDEKGMKDQLCNGLQLNEVIDRKVAKLSGGELQRVGIAAAALQSADVYMFDEPSSYLDVKQRLNAARVIKSLLRTNSYVIVVEHDLSITCPTIFAAYMGNLELMVLLRCHFRFEKIADAQEDAEIKTYQRYKYPTMSKTIGNFKLTVMEGEFTDSQIVVMLGENGTGKTTFIKMLAGVEKPDTVDGIDIEVPEFCVSYKPQKLASTYQGTVRQFLHEKIRDSYTHPQFVSDVMKPLKMQQLMDQEVQHLSCGQLQRVALCICLGKPADIYLIDEPSASLDSEQRLVASKVIKRFIMHAKKTAFIVEHDFIMATYLADRVIVYEGQPAVDCTANAPQSLLSGMNKFLSHLEITFRRDPTNFRPRINKLDSAKDREQKSAGSYYYL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr10 | 17215328 | 17215436 | + | OsLiXu_10g0011440.02 | OsLiXu_10g0011440.02,OsLiXu_10g0011440.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g29650 | RBH | 0.667025 | 0.916407 | 0.739621 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0011680 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0011900 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0011610 | RBH | 0.654158 | 4.455793 | 16.208157 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0011930 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0011670 | RBH | 0.0 | 0.0 | 0.421140 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0011720 | RBH | 0.0 | 0.000000 | 0.067470 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0276800 | RBH | 0.026125 | 0.00811 | 0.085506 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0011460 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0011440 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0011860 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0011930 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G011800 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0011740 | RBH | 0.0 | 0.0 | 0.000000 |
