Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_10g0010010 | OGI:10045760 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr10:15761865-15764428 | ||||||||
| Gene Symbol | RDD3, OsDof26, Dof26, OsDof-26 | ||||||||||
| DNA seq | tcaagatccctcctggaaggtcgcggatcgggtaagcgcgacGgggttggtgtgcaagagcggcaagctcgtgatcgccggatgtttcgccgtcttgccgtccctctttggctcgaacaccgtggtggcgagcttgtgcacgctggtgccatcgtcgtcgttgttatcgtccaccttgtcgccgcctctgaaggcgaagagtgaccggattgagctccgggcaacctcgtcggcgttgtcgatccggatcgtcttcggcacccacactttaccattgccatggtgatctcttgcctcatgatcaccaccctctctaggatgcttgcctagtgtgaaggaggagactgaaggtgtagcacttgtaggtggtgatgatgatgagatggcctgagactggactgtggccggccatgggaggctccaagctccaggaggtggaatcatgcagccccagtacgccggcgccgccgggtatatcgggatcgcgatccccgaggtgtagtagggccagatgccgccaccgttcatggctgaatgatgatgatgatgaggaggaggaggatgctgctgcaacccgtttgcaggttttgctacagtgttgccgatctgctcgtcgtccctgttgctcgacacctcgctgcacgcggcggcggcgtcggcgttccgggcatgggcgacgagcccctccttgccgaggcgcgtcatcttgtcggcgaggtccagggtgaccggcagcgcgtcgtgtccgcctccgccgccgccgaagctgagcacggtggcgttggtggcgtcgtggggcgccgcgggcatggcggcggcggcggcgcaggcgcggacgcggtggaggaagtgggcggcggcggtggcgttcttgttcttgcggcggccggcgccgacggggacgttgcgcatggcgccgccggcggtccagtagcgctggcagtgcttgcagaagtggcgaggctggttgacgttgtagttgttgaagtagcagaacttggtgtccatgctgctgcaccgcgggcatggcaggatcttgtccggcttcttcagcttcatctccttctgctgctgctgatggctcgccgcctcgccgcccggctgcggcgggctctcgccgtcgacgacctccgaccgcggggaggggtcggcgacggcgacagcggcggtttcttggacgtcggattcggttgagctgctgctactgccactatgctgctgaacatcctgcaaattagcaacagtcaaattagttgatcagttctgaagaagtgataattactatagttcttgataaacactgtaaattttttagcctttttttgggtataaatcaggaggatacaactgtacaggctatggttaacatcaccacatatttgtaattatctgatactatccatgagtgcaaatttagagagagaaaaaatatttatttccattttgttgtttcagggttacagtactaggtactttgctgtattgggaattggttcctgtttctgaactctatctgaaggttggaaaattactagttttttctttcacagcttataagaaaggaaatttggaccaacatagatggatcctaggaggctaaaagacaaggctttgtctcaactcctaaaaactctgaagagaccaaccaaacaggtcaggtccatcttcagaaactctagatttgcaccaaatcaagccccccataccacaccaacttaaattagcatatatttatttaagagaaaaaatgacttccatcacccttccttatgaactgtaaataaaaaaaaaactttatacttttcctaatagaaatttcagcttcatcaaactcttcaaactagcactcactactgcacctttggaaggcctcctatgccttcacataaaagaaaaacaaaagattttttgcagtttaagatgagaagagacatacaagaattacagagcagagacccaaaccgaaaattccccaagagacgcagagccaagaatcaaaaactaaaacaaaaaaacaaaaacaacaacaacaacgacaaacgacgatcctgatcaatcgaagcagggcaggaacaaaaccaaccttggcatccggctgcaccgggatcgtcttcccgaacagcttgatcagcccatctcctcctcctctgcactcacccatctcacccaagctctcctctgattctctctctctagttcgtcttcttgcgcctccgctgctgctgctgcaacactggaacaagagcaagaacaacaagtacaagaagaagaagaagaagggggattggggttgtaggagggaggaggagggaattgggggttcttggagtgatgcgtgcggcggctggctataagagaagggagggaggaggagggtgggggccacgtaggagggtgtcgagagccacaagcttggccttgtggcctcaagggtgcgttttttgattctcttcctcgtcgccttttcccacaccccccgtcgccctcacccgcacctggccccttcttcgcttggctgaaatctttcctcttttccctcttttgcacttaccaccccctcccat
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| CDS seq | atgggagggggtggtaagtgcaaaagagggaaaagaggaaagatttcagccaagcgaagaaggggccaggtgcgggatgttcagcagcatagtggcagtagcagcagctcaaccgaatccgacgtccaagaaaccgccgctgtcgccgtcgccgacccctccccgcggtcggaggtcgtcgacggcgagagcccgccgcagccgggcggcgaggcggcgagccatcagcagcagcagaaggagatgaagctgaagaagccggacaagatcctgccatgcccgcggtgcagcagcatggacaccaagttctgctacttcaacaactacaacgtcaaccagcctcgccacttctgcaagcactgccagcgctactggaccgccggcggcgccatgcgcaacgtccccgtcggcgccggccgccgcaagaacaagaacgccaccgccgccgcccacttcctccaccgcgtccgcgcctgcgccgccgccgccgccatgcccgcggcgccccacgacgccaccaacgccaccgtgctcagcttcggcggcggcggaggcggacacgacgcgctgccggtcaccctggacctcgccgacaagatgacgcgcctcggcaaggaggggctcgtcgcccatgcccggaacgccgacgccgccgccgcgtgcagcgaggtgtcgagcaacagggacgacgagcagatcggcaacactgtagcaaaacctgcaaacgggttgcagcagcatcctcctcctcctcatcatcatcatcattcagccatgaacggtggcggcatctggccctactacacctcggggatcgcgatcccgatatacccggcggcgccggcgtactggggctgcatgattccacctcctggagcttggagcctcccatggccggccacagtccagtctcaggccatctcatcatcatcaccacctacaagtgctacaccttcagtctcctccttcacactaggcaagcatcctagagagggtggtgatcatgaggcaagagatcaccatggcaatggtaaagtgtgggtgccgaagacgatccggatcgacaacgccgacgaggttgcccggagctcaatccggtcactcttcgccttcagaggcggcgacaaggtggacgataacaacgacgacgatggcaccagcgtgcacaagctcgccaccacggtgttcgagccaaagagggacggcaagacggcgaaacatccggcgatcacgagcttgccgctcttgcacaccaacccCgtcgcgcttacccgatccgcgaccttccaggagggatcttga
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| Protein seq | MGGGGKCKRGKRGKISAKRRRGQVRDVQQHSGSSSSSTESDVQETAAVAVADPSPRSEVVDGESPPQPGGEAASHQQQQKEMKLKKPDKILPCPRCSSMDTKFCYFNNYNVNQPRHFCKHCQRYWTAGGAMRNVPVGAGRRKNKNATAAAHFLHRVRACAAAAAMPAAPHDATNATVLSFGGGGGGHDALPVTLDLADKMTRLGKEGLVAHARNADAAAACSEVSSNRDDEQIGNTVAKPANGLQQHPPPPHHHHHSAMNGGGIWPYYTSGIAIPIYPAAPAYWGCMIPPPGAWSLPWPATVQSQAISSSSPPTSATPSVSSFTLGKHPREGGDHEARDHHGNGKVWVPKTIRIDNADEVARSSIRSLFAFRGGDKVDDNNDDDGTSVHKLATTVFEPKRDGKTAKHPAITSLPLLHTNPVALTRSATFQEGS |
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| Function | Cyclic dof factor 2 [UniProtKB/Swiss-Prot:Q93ZL5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_10g0010010 | OsLiXu_10g0010010.01 | Chr10 | 15761865 | 15764428 | - | NAM | ||
| CDS seq | atgggagggggtggtaagtgcaaaagagggaaaagaggaaagatttcagccaagcgaagaaggggccaggtgcgggatgttcagcagcatagtggcagtagcagcagctcaaccgaatccgacgtccaagaaaccgccgctgtcgccgtcgccgacccctccccgcggtcggaggtcgtcgacggcgagagcccgccgcagccgggcggcgaggcggcgagccatcagcagcagcagaaggagatgaagctgaagaagccggacaagatcctgccatgcccgcggtgcagcagcatggacaccaagttctgctacttcaacaactacaacgtcaaccagcctcgccacttctgcaagcactgccagcgctactggaccgccggcggcgccatgcgcaacgtccccgtcggcgccggccgccgcaagaacaagaacgccaccgccgccgcccacttcctccaccgcgtccgcgcctgcgccgccgccgccgccatgcccgcggcgccccacgacgccaccaacgccaccgtgctcagcttcggcggcggcggaggcggacacgacgcgctgccggtcaccctggacctcgccgacaagatgacgcgcctcggcaaggaggggctcgtcgcccatgcccggaacgccgacgccgccgccgcgtgcagcgaggtgtcgagcaacagggacgacgagcagatcggcaacactgtagcaaaacctgcaaacgggttgcagcagcatcctcctcctcctcatcatcatcatcattcagccatgaacggtggcggcatctggccctactacacctcggggatcgcgatcccgatatacccggcggcgccggcgtactggggctgcatgattccacctcctggagcttggagcctcccatggccggccacagtccagtctcaggccatctcatcatcatcaccacctacaagtgctacaccttcagtctcctccttcacactaggcaagcatcctagagagggtggtgatcatgaggcaagagatcaccatggcaatggtaaagtgtgggtgccgaagacgatccggatcgacaacgccgacgaggttgcccggagctcaatccggtcactcttcgccttcagaggcggcgacaaggtggacgataacaacgacgacgatggcaccagcgtgcacaagctcgccaccacggtgttcgagccaaagagggacggcaagacggcgaaacatccggcgatcacgagcttgccgctcttgcacaccaacccCgtcgcgcttacccgatccgcgaccttccaggagggatcttga
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| Protein seq | MGGGGKCKRGKRGKISAKRRRGQVRDVQQHSGSSSSSTESDVQETAAVAVADPSPRSEVVDGESPPQPGGEAASHQQQQKEMKLKKPDKILPCPRCSSMDTKFCYFNNYNVNQPRHFCKHCQRYWTAGGAMRNVPVGAGRRKNKNATAAAHFLHRVRACAAAAAMPAAPHDATNATVLSFGGGGGGHDALPVTLDLADKMTRLGKEGLVAHARNADAAAACSEVSSNRDDEQIGNTVAKPANGLQQHPPPPHHHHHSAMNGGGIWPYYTSGIAIPIYPAAPAYWGCMIPPPGAWSLPWPATVQSQAISSSSPPTSATPSVSSFTLGKHPREGGDHEARDHHGNGKVWVPKTIRIDNADEVARSSIRSLFAFRGGDKVDDNNDDDGTSVHKLATTVFEPKRDGKTAKHPAITSLPLLHTNPVALTRSATFQEGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.265858 | 0.0 | 0.175468 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0406300 | RBH | 3.300503 | 2.399814 | 4.669250 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g26620 | RBH | 2.121305 | 1.534045 | 1.166580 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0406300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0010140 | RBH | 0.835212 | 4.487460 | 5.039194 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0010230 | RBH | 0.278569 | 2.179545 | 1.207499 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0010100 | RBH | 1.615665 | 4.930263 | 8.982271 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0010460 | RBH | 0.068620 | 0.031387 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0010190 | RBH | 5.230328 | 6.307811 | 11.068357 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0237500 | RBH | 2.9641945 | 25.5617515 | 18.839268 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0010230 | RBH | 0.130123 | 0.532294 | 1.410258 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0257400 | RBH | 17.4134055 | 32.569051 | 0.6013885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0010000 | RBH | 0.117876 | 0.180459 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0009980 | RBH | 0.344198 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0010420 | RBH | 0.0 | 9.699310 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0060970 | RBH | 0.337034 | 0.0 | 0.283187 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0010490 | RBH | 0.245582 | 4.818791 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G010330 | RBH | 0.354345 | 1.389961 | 1.557763 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0010290 | RBH | 2.013214 | 77.124603 | 10.434538 |
