Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_10g0001990 | OGI:10008690 | 1/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr10:2978584-2979794 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | accaatacataaagttgtcatgggatagaacgagtcaaatgatggtttatagtaagtcaagtgctatgacaaaatagattggaattcttttattcatcaaaaggaaactaataataataccattattacaaagcatgaaactacattagcgagagagtgtcaaatgtctaataaacccccccaaatgtcaaagctcacccagagtcaaacagtgacggctcttggcaggaggcgcgcccggagaggcttctccatgacgacggtgaactcgagcttctcgccgtcgacgtccaccgcctccccctccgccgcccgccacttgaacgccgccaccatgttcgccacgaagtactccaggtgcagcgtcgccacgcccagccccgggcagatcctccgcccggcgccgaacggcatcatcctgatctccctcgtcccggtgatgtccaccccctcgccgtcgccgccggccatgaacctctccggcagaactccctcggcctgtcccacgccgccccgtccatgcccatgtcggccaccgtgaagttcaccagtgtgcccttggggatcgtgtacccgccgagctccatgtcctccgccggcgcgtgcgggagcacgaagtgccccggcgggtgtcgccggagaccctccatgacaccgccttcaggtacggcatcttctgcacgtcctcctctccgacaccttgccggagttggaggtgatggcgcccttgatctcgccgtggagcttgtcctggatgattgggttcttgaccagctccgccatgatccactccagcgccgtcgagtggtgtccgtgccgccgttgaggaactcggagcagagcgccaccatctcgtcgtcggtgagcgcgcgctcgccgccgttgtcattgatcctgaggttgagcagcgtgtcgacgtacgagtgcggcaacgtcgtggcgctcgccgccggcggtggtggcgcggtgcgtcgccatggtcgtcgaccaggttcttgcgcgccctgcgcgcgtcgatcagcggcatgaacatccccttcagccgctggcgcatggcgatcatggccttcatccccggcgaagaggcgcgtcgtgatggccgggaggaaggcgaagaccctgagcttcttggaggagtggagcagcaggtcgcgctgcgcggcggcgatgtcgcgcacggcgcgctcgtcgagcagctcgccgaagcacat
More
|
||||||||||
| CDS seq | atgtgcttcggcgagctgctcgacgagcgcgccgtgcgcgacatcgccgccgcgcagcgcgacctgctgctccactcctccaagaagctcagggtcttcgccttcctcccggccatcacgacgcgcctcttcgccggggatgaaggccatgatcgccatgcgccagcggctgaaggggatgttcatgccgctgatcgacgcgcgcagggcgcgcaagaacctggtcgacgaccatggcgacgcaccgcgccaccaccgccggcggcgagcgccacgacgttgccgcactcgtacgtcgacacgctgctcaacctcaggatcaatgacaacggcggcgagcgcgcgctcaccgacgacgagatggtggcgctctgctccgagttcctcaacggcggcacggacaccactcgacggcgctggagtggatcatggcggagctggtcaagaacccaatcatccaggacaagctccacggcgagatcaagggcgccatcacctccaactccggcaaggtgtcggagaggaggacgtgcagaagatgccgtacctgaaggcggtgtcatggagggtctccggcgacacccgccggggcacttcgtgctcccgcacgcgccggcggaggacatggagctcggcgggtacacgatccccaagggcacactggccgagggagttctgccggagaggttcatggccggcggcgacggcgagggggtggacatcaccgggacgagggagatcaggatgatgccgttcggcgccgggcggaggatctgcccggggctgggcgtggcgacgctgcacctggagtacttcgtggcgaacatggtggcggcgttcaagtggcgggcggcggagggggaggcggtggacgtcgacggcgagaagctcgagttcaccgtcgtcatggagaagcctctccgggcgcgcctcctgccaagagccgtcactgtttga
More
|
||||||||||
| Protein seq | MCFGELLDERAVRDIAAAQRDLLLHSSKKLRVFAFLPAITTRLFAGDEGHDRHAPAAEGDVHAADRRAQGAQEPGRRPWRRTAPPPPAASATTLPHSYVDTLLNLRINDNGGERALTDDEMVALCSEFLNGGTDTTRRRWSGSWRSWSRTQSSRTSSTARSRAPSPPTPARCRRGGRAEDAVPEGGVMEGLRRHPPGHFVLPHAPAEDMELGGYTIPKGTLAEGVLPERFMAGGDGEGVDITGTREIRMMPFGAGRRICPGLGVATLHLEYFVANMVAAFKWRAAEGEAVDVDGEKLEFTVVMEKPLRARLLPRAVTV |
||||||||||
| Function | Cytochrome P450 89A2 [UniProtKB/Swiss-Prot:Q42602] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_10g0001990 | OsLiXu_10g0001990.01 | Chr10 | 2978584 | 2979794 | - | NAM | ||
| CDS seq | atgtgcttcggcgagctgctcgacgagcgcgccgtgcgcgacatcgccgccgcgcagcgcgacctgctgctccactcctccaagaagctcagggtcttcgccttcctcccggccatcacgacgcgcctcttcgccggggatgaaggccatgatcgccatgcgccagcggctgaaggggatgttcatgccgctgatcgacgcgcgcagggcgcgcaagaacctggtcgacgaccatggcgacgcaccgcgccaccaccgccggcggcgagcgccacgacgttgccgcactcgtacgtcgacacgctgctcaacctcaggatcaatgacaacggcggcgagcgcgcgctcaccgacgacgagatggtggcgctctgctccgagttcctcaacggcggcacggacaccactcgacggcgctggagtggatcatggcggagctggtcaagaacccaatcatccaggacaagctccacggcgagatcaagggcgccatcacctccaactccggcaaggtgtcggagaggaggacgtgcagaagatgccgtacctgaaggcggtgtcatggagggtctccggcgacacccgccggggcacttcgtgctcccgcacgcgccggcggaggacatggagctcggcgggtacacgatccccaagggcacactggccgagggagttctgccggagaggttcatggccggcggcgacggcgagggggtggacatcaccgggacgagggagatcaggatgatgccgttcggcgccgggcggaggatctgcccggggctgggcgtggcgacgctgcacctggagtacttcgtggcgaacatggtggcggcgttcaagtggcgggcggcggagggggaggcggtggacgtcgacggcgagaagctcgagttcaccgtcgtcatggagaagcctctccgggcgcgcctcctgccaagagccgtcactgtttga
More
|
|||||||
| Protein seq | MCFGELLDERAVRDIAAAQRDLLLHSSKKLRVFAFLPAITTRLFAGDEGHDRHAPAAEGDVHAADRRAQGAQEPGRRPWRRTAPPPPAASATTLPHSYVDTLLNLRINDNGGERALTDDEMVALCSEFLNGGTDTTRRRWSGSWRSWSRTQSSRTSSTARSRAPSPPTPARCRRGGRAEDAVPEGGVMEGLRRHPPGHFVLPHAPAEDMELGGYTIPKGTLAEGVLPERFMAGGDGEGVDITGTREIRMMPFGAGRRICPGLGVATLHLEYFVANMVAAFKWRAAEGEAVDVDGEKLEFTVVMEKPLRARLLPRAVTV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0139700 | SBH | 0.356538 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g05020 | SBH | 0.232406 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0139700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0002180 | SBH | 0.0 | 4.832012 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0002150 | SBH | 0.0 | 1.740139 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0002110 | SBH | 0.0 | 2.357250 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0002270 | SBH | 0.101442 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0002010 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0041900 | SBH | 0.761078 | 7.2719735 | 1.0532015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0016970 | SBH | 0.000000 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0047400 | SBH | 1.29798 | 3.879731 | 1.4507075 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0016750 | SBH | 0.0 | 0.024326 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0016600 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0002200 | SBH | 0.0 | 3.403902 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0055870 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0002190 | SBH | 0.0 | 1.441382 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G002180 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0002120 | SBH | 0.0 | 0.0 | 1.232630 |
