Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_10g0001480 | OGI:10007330 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr10:2399237-2401009 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggatGCcgtggtgagTgtctcacatggggcactgggGccactgctgggcaagctcaataccttgctcgtagacgagtgcgcGcgcctgaaaggtgtccGccgtgagatCcgctcCcttagatcggagttgagcaacatgcaGgcggcgctccacaagtacacatcactcgaggatcctgacatccaggtgaagGcctggatCaCcgagttgagggagcttgcctatgacatcgaggactgcatagacaagttcatgcaccaacttggtgccaacgacgaccagcaccacactagtaatggcgtcaaggacttcttcgggaagagtgcaaaacgtctcaaaactcttggctcaaggcataatattgctgccgagattgaGgaactgaagGCAcgagttatctcggtgagagatcaaaagaacaGctacaagcttgatgatattttttgtagtagctctagcaaTactaatgcttCtgttgatccacgAttggctgctctAttcgcAgaagagaaccatcttgtTggCatagatagtccaagggatgaacttgtcaattggttggatgcagatagcaggttgataaagcatcgcaaggtattgtctattgtggggtttggaggtcttggaaagacaactctagcaaatgaggtatatcgtagggttaaaattcattttgattgccctgcttttacgtcggtatcacaaaagcctgatatgaagaaaatcttcaaggatattatataccatatgcctacgaaagatgcattcctcaaagatattgacacatggaatgaaaagaaatttattgaaaagctaagagaactacttgtggataagaggtaattctctagctcctttttcttttccacttcgagaaattctttatacctacattcgtgatataatagagtggtttttcctacacaaacttatattgtttaaacttcaactaggtatctgttataattgatgatgtctggtctatttcggcatggaaagctatcagtgttgttttcccggagaatggttctagtataattatagttactacacgcatttccgatgttggacggtcatgctgcttaaatggaattgaccgcaattttgagatggaacctctaagtgaaattcactctagaagactattttgccagagaattttcagcacatatgaggatggctgcccagatattttacaagaagtttcacaatatcttgaagaaatgtgggggtattccattagcaattattagtatatctggtttgttatcaaacagaccaattatcaaggaagagtgggagaaagtgaaagaatcgattggttttgtattggacaagaaccaaaatctagaaggaatgaaaagcatactctcccttagctacaatgaccttccaaactattttaagacatgtttgatatatttgtgcatatttccagaggattatattattgaaacaaacatgctattacggcgatggatagctgaaggctttgtctctgaggattgtggaatgaacttggaagatgttgcagagagctacttttgtgagctggtcaacagaagcctggtccaacctgtggacattcgctttgacagtaaggcccgtgcatgccgcgtccatgatataatgcttgaacttatcacttcaaaggcgacagaagaaaactttattacattgttacgtggccaaacaaggaaaacaaatttgcatggtacgttcgtcgattatccatccaggacactgataatgatttgtcaagtctgttag
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| CDS seq | atggatGCcgtggtgagTgtctcacatggggcactgggGccactgctgggcaagctcaataccttgctcgtagacgagtgcgcGcgcctgaaaggtgtccGccgtgagatCcgctcCcttagatcggagttgagcaacatgcaGgcggcgctccacaagtacacatcactcgaggatcctgacatccaggtgaagGcctggatCaCcgagttgagggagcttgcctatgacatcgaggactgcatagacaagttcatgcaccaacttggtgccaacgacgaccagcaccacactagtaatggcgtcaaggacttcttcgggaagagtgcaaaacgtctcaaaactcttggctcaaggcataatattgctgccgagattgaGgaactgaagGCAcgagttatctcggtgagagatcaaaagaacaGctacaagcttgatgatattttttgtagtagctctagcaaTactaatgcttCtgttgatccacgAttggctgctctAttcgcAgaagagaaccatcttgtTggCatagatagtccaagggatgaacttgtcaattggttggatgcagatagcaggttgataaagcatcgcaaggtattgtctattgtggggtttggaggtcttggaaagacaactctagcaaatgaggtatatcgtagggttaaaattcattttgattgccctgcttttacgtcggtatcacaaaagcctgatatgaagaaaatcttcaaggatattatataccatatgcctacgaaagatgcattcctcaaagatattgacacatggaatgaaaagaaatttattgaaaagctaagagaactacttgtatctgttataattgatgatgtctggtctatttcggcatggaaagctatcagtgttgttttcccggagaatggttctagtataattatagttactacacgcatttccgatgttggacggtcatgctgcttaaatggaattgaccgcaattttgagatggaacctctaagtgaaattcactctagaagactattttgccagagaattttcagcacatatgaggatggctgcccagatattttacaagaagtttcacaatatcttgaagaaatgtggggaccaattatcaaggaagagtgggagaaagtgaaagaatcgattggttttgtattggacaagaaccaaaatctagaaggaatgaaaagcatactctcccttagctacaatgaccttccaaactattttaagacatgtttgatatatttgtgcatatttccagaggattatattattgaaacaaacatgctattacggcgatggatagctgaaggctttgtctctgaggattgtggaatgaacttggaagatgttgcagagagctacttttgtgagctggtcaacagaagcctggtccaacctgtggacattcgctttgacagtaaggcccgtgcatgccgcgtccatgatataatgcttgaacttatcacttcaaaggcgacagaagaaaactttattacattgttacgtggccaaacaaggaaaacaaatttgcatggtacgttcgtcgattatccatccaggacactgataatgatttgtcaagtctgttag
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| Protein seq | MDAVVSVSHGALGPLLGKLNTLLVDECARLKGVRREIRSLRSELSNMQAALHKYTSLEDPDIQVKAWITELRELAYDIEDCIDKFMHQLGANDDQHHTSNGVKDFFGKSAKRLKTLGSRHNIAAEIEELKARVISVRDQKNSYKLDDIFCSSSSNTNASVDPRLAALFAEENHLVGIDSPRDELVNWLDADSRLIKHRKVLSIVGFGGLGKTTLANEVYRRVKIHFDCPAFTSVSQKPDMKKIFKDIIYHMPTKDAFLKDIDTWNEKKFIEKLRELLVSVIIDDVWSISAWKAISVVFPENGSSIIIVTTRISDVGRSCCLNGIDRNFEMEPLSEIHSRRLFCQRIFSTYEDGCPDILQEVSQYLEEMWGPIIKEEWEKVKESIGFVLDKNQNLEGMKSILSLSYNDLPNYFKTCLIYLCIFPEDYIIETNMLLRRWIAEGFVSEDCGMNLEDVAESYFCELVNRSLVQPVDIRFDSKARACRVHDIMLELITSKATEENFITLLRGQTRKTNLHGTFVDYPSRTLIMICQVC |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_10g0001480 | OsLiXu_10g0001480.01 | Chr10 | 2399237 | 2401009 | + | NAM | ||
| CDS seq | atggatGCcgtggtgagTgtctcacatggggcactgggGccactgctgggcaagctcaataccttgctcgtagacgagtgcgcGcgcctgaaaggtgtccGccgtgagatCcgctcCcttagatcggagttgagcaacatgcaGgcggcgctccacaagtacacatcactcgaggatcctgacatccaggtgaagGcctggatCaCcgagttgagggagcttgcctatgacatcgaggactgcatagacaagttcatgcaccaacttggtgccaacgacgaccagcaccacactagtaatggcgtcaaggacttcttcgggaagagtgcaaaacgtctcaaaactcttggctcaaggcataatattgctgccgagattgaGgaactgaagGCAcgagttatctcggtgagagatcaaaagaacaGctacaagcttgatgatattttttgtagtagctctagcaaTactaatgcttCtgttgatccacgAttggctgctctAttcgcAgaagagaaccatcttgtTggCatagatagtccaagggatgaacttgtcaattggttggatgcagatagcaggttgataaagcatcgcaaggtattgtctattgtggggtttggaggtcttggaaagacaactctagcaaatgaggtatatcgtagggttaaaattcattttgattgccctgcttttacgtcggtatcacaaaagcctgatatgaagaaaatcttcaaggatattatataccatatgcctacgaaagatgcattcctcaaagatattgacacatggaatgaaaagaaatttattgaaaagctaagagaactacttgtatctgttataattgatgatgtctggtctatttcggcatggaaagctatcagtgttgttttcccggagaatggttctagtataattatagttactacacgcatttccgatgttggacggtcatgctgcttaaatggaattgaccgcaattttgagatggaacctctaagtgaaattcactctagaagactattttgccagagaattttcagcacatatgaggatggctgcccagatattttacaagaagtttcacaatatcttgaagaaatgtggggaccaattatcaaggaagagtgggagaaagtgaaagaatcgattggttttgtattggacaagaaccaaaatctagaaggaatgaaaagcatactctcccttagctacaatgaccttccaaactattttaagacatgtttgatatatttgtgcatatttccagaggattatattattgaaacaaacatgctattacggcgatggatagctgaaggctttgtctctgaggattgtggaatgaacttggaagatgttgcagagagctacttttgtgagctggtcaacagaagcctggtccaacctgtggacattcgctttgacagtaaggcccgtgcatgccgcgtccatgatataatgcttgaacttatcacttcaaaggcgacagaagaaaactttattacattgttacgtggccaaacaaggaaaacaaatttgcatggtacgttcgtcgattatccatccaggacactgataatgatttgtcaagtctgttag
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| Protein seq | MDAVVSVSHGALGPLLGKLNTLLVDECARLKGVRREIRSLRSELSNMQAALHKYTSLEDPDIQVKAWITELRELAYDIEDCIDKFMHQLGANDDQHHTSNGVKDFFGKSAKRLKTLGSRHNIAAEIEELKARVISVRDQKNSYKLDDIFCSSSSNTNASVDPRLAALFAEENHLVGIDSPRDELVNWLDADSRLIKHRKVLSIVGFGGLGKTTLANEVYRRVKIHFDCPAFTSVSQKPDMKKIFKDIIYHMPTKDAFLKDIDTWNEKKFIEKLRELLVSVIIDDVWSISAWKAISVVFPENGSSIIIVTTRISDVGRSCCLNGIDRNFEMEPLSEIHSRRLFCQRIFSTYEDGCPDILQEVSQYLEEMWGPIIKEEWEKVKESIGFVLDKNQNLEGMKSILSLSYNDLPNYFKTCLIYLCIFPEDYIIETNMLLRRWIAEGFVSEDCGMNLEDVAESYFCELVNRSLVQPVDIRFDSKARACRVHDIMLELITSKATEENFITLLRGQTRKTNLHGTFVDYPSRTLIMICQVC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0131000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g04342 | RBH | 1.600915 | 1.859511 | 0.773343 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0131000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001560 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001540 | RBH | 0.100991 | 1.334803 | 0.852987 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001560 | RBH | 0.0 | 0.733663 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001470 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001460 | SBH | 1.738933 | 3.630061 | 4.305751 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0033900 | RBH | 0.6370025 | 3.3276555 | 4.9562595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001630 | RBH | 0.000000 | 0.0 | 0.100694 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0038900 | RBH | 0.015219 | 1.538173 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001500 | RBH | 0.0 | 0.056308 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001580 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001610 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0055330 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001540 | RBH | 0.0 | 0.520800 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001550 | RBH | 0.0 | 0.0 | 0.291640 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001420 | RBH | 0.0 | 0.0 | 0.231602 |
