Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_10g0000050 | OGI:10001180 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr10:235176-238016 | ||||||||
| Gene Symbol | SDRLK-44 | ||||||||||
| DNA seq | gaagaagaaattccagtccacagtcaaggcaatgaatattcaatttacatgatgggcaaattggctacagtgttgttgactggactcgaggtgaggagagtcgtcggttcgatcccaaatccaaaagcaagaaatccaattcccttcccCaatccagcaagcacaaccatggcggccgctgtcctcctcctcctcctcctCCTaccggccctcgccgccgcccaggcccaggcccagcagatgcggaccttctccgccaacgacaccaattggagccccgccgagagcaaccgcaccctcgtctccaacaacgggtacttcgccgccggattccggccctccccCtcctccccagccaagttctggttcgccgtctgggtgagcgccaacgccaacgagtccaggccggtcgtcatatggtacgcccacaaaaacaacgaccactccgccgtggagggcgacgccaattccgtgctctccatcgacgcggcggggaagctgtcgtggagcgacaacggcaacagcaccaccctttggtcccccAACTCcaactccaactccacgagtgcccctttgtctctgaacgactcggggagcctcgaccacgGcgcctggtccagcttcggggagccgacggacacgctgatggcgtcgcaggccatccccagcattagcaacggcaccaccaccaccaccaccaccagcatcaccctgcagtcccagaacggcagattccagctggtcaacgccctcaccctgcagcacggctcctccgcctacgccaacatcaccggcaacaccgccctgcgcaacctcaccgccgacggcacgctgcaactcgctggtggcaatccctcccagctcatcgcctccgaccagggctccactcgcctgcgccgcctcaccctcgacgacgacggcaacctgcgcctctacagcctgcagtccaagaaagggcagtggcgggtggtatggcagctggtgcaggagctctgcaccatccggggcgcctgccaaggggaggccaacatctgcgtcccccaaggcgccgacaaCaccacctgcgtctgcccgccggggtaccgcccgcagggcctgggctgcgcccccaagcttaactacagcggcaagggcaacgacgacaagttcgtgcggatggatttcgtttccttctccggtggcgccgacaccggagtgtccgtccccggcaagtacatgaccagcctgacgccgcagaacctggcggactgccagagcaagtgccgggccaacgcctcttgcgtggccttcggctacaagttgggcggggaccggacgtgcctgcactacacgcggctggtggacggctactggtcgccggcgacggagatgtcgacctacctgcgggtggtggagtcgaacaacgacccgaacaacttcacggggatgacgacgatgatcgacacggtgtgcccggtgcggctggcgctgccggtgccgccgaagcaggggcggacgacgatccggaacatcgccatcatcacggcgctgttcgcggtggagctgctggcgggggtgctgtcgttctgggcgttcctgcgcaagtactcgcagtacagggagatggcgcggacgctggggctggagtacctccccgccggcgggccgcggcggttctcgtacgcggagctgaaggcggcgaccaaggagttctcggacatggtggggcgcggggcgtacgggaaggtgtaccgcggggagctgccggaccggcgggcggtggcggtgaagcagctggacggggtgggcgggggagaggcggagttctgggcggaggtgaccatcatcgcgcggatgcaccacctcaacctggtgcggatgtgggggttctgcgcggacaaggagcagaggatgctggtgtacgagtatgtgccaaacggatcgctggacaagtacctgttcgctccaggcaccggcacccaaggagacgaagaagagagcaacaagcggcctctgcttgacctgcacacccgctaccgcatcgctctgggcgtggcgcgcgccatcgcgtaccttcacgaggagtgcctcgagtgggttctgcactgcgacatcaagcctgagaacatccttctggaggacgacttctgccccaaggtgtccgacttcgggctgtccaagctcaccagcaagaaggagaaggtgaccatgtcccgcatccgtggcacccgcgggtacatggcccccgagtgggtcatccaccgcgagcccatcaccgccaaggccgacgtctacagcttcggcatggttctgcttgagatcgtctccggccgccgcaactacggcttccgccaggactccgtcggcagcgaggactggtacttccccaagtgggccttcgagaaggtctacgtcgagcgccgcatcgacgacatcatcgaccctcgcatcgtccaggccgaggcctacgacgacgaccccgccagcctcgccaccgtcgagcgcatggtcaagacggccatgtggtgccttcaggaccgcgccgacatgaggccctccatgggcaaggtcgccaagatgctcgagggcaccgtcgagatcaccgagcccgtcaagcccaccatcttctgcgtccaggacgactgatctctcctaggagtactccacttcttgccacgagagacacacaaattatctttcttatttattatactagtactagttcagatcagatcagagcagagcactgcatatcctgcgttgtctgatttgcctgctgggctcacgacagcaactgagcaaggcaaatgtacatgatgagtggattacgcttcaaaatgatacgcaccatcaaattcgtcg
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| CDS seq | atgatgggcaaattggctacagtgttgttgactggactcgaggtgaggagagtcgtcggttcgatcccaaatccaaaagcaagaaatccaattcccttcccCaatccagcaagcacaaccatggcggccgctgtcctcctcctcctcctcctCCTaccggccctcgccgccgcccaggcccaggcccagcagatgcggaccttctccgccaacgacaccaattggagccccgccgagagcaaccgcaccctcgtctccaacaacgggtacttcgccgccggattccggccctccccCtcctccccagccaagttctggttcgccgtctgggtgagcgccaacgccaacgagtccaggccggtcgtcatatggtacgcccacaaaaacaacgaccactccgccgtggagggcgacgccaattccgtgctctccatcgacgcggcggggaagctgtcgtggagcgacaacggcaacagcaccaccctttggtcccccAACTCcaactccaactccacgagtgcccctttgtctctgaacgactcggggagcctcgaccacgGcgcctggtccagcttcggggagccgacggacacgctgatggcgtcgcaggccatccccagcattagcaacggcaccaccaccaccaccaccaccagcatcaccctgcagtcccagaacggcagattccagctggtcaacgccctcaccctgcagcacggctcctccgcctacgccaacatcaccggcaacaccgccctgcgcaacctcaccgccgacggcacgctgcaactcgctggtggcaatccctcccagctcatcgcctccgaccagggctccactcgcctgcgccgcctcaccctcgacgacgacggcaacctgcgcctctacagcctgcagtccaagaaagggcagtggcgggtggtatggcagctggtgcaggagctctgcaccatccggggcgcctgccaaggggaggccaacatctgcgtcccccaaggcgccgacaaCaccacctgcgtctgcccgccggggtaccgcccgcagggcctgggctgcgcccccaagcttaactacagcggcaagggcaacgacgacaagttcgtgcggatggatttcgtttccttctccggtggcgccgacaccggagtgtccgtccccggcaagtacatgaccagcctgacgccgcagaacctggcggactgccagagcaagtgccgggccaacgcctcttgcgtggccttcggctacaagttgggcggggaccggacgtgcctgcactacacgcggctggtggacggctactggtcgccggcgacggagatgtcgacctacctgcgggtggtggagtcgaacaacgacccgaacaacttcacggggatgacgacgatgatcgacacggtgtgcccggtgcggctggcgctgccggtgccgccgaagcaggggcggacgacgatccggaacatcgccatcatcacggcgctgttcgcggtggagctgctggcgggggtgctgtcgttctgggcgttcctgcgcaagtactcgcagtacagggagatggcgcggacgctggggctggagtacctccccgccggcgggccgcggcggttctcgtacgcggagctgaaggcggcgaccaaggagttctcggacatggtggggcgcggggcgtacgggaaggtgtaccgcggggagctgccggaccggcgggcggtggcggtgaagcagctggacggggtgggcgggggagaggcggagttctgggcggaggtgaccatcatcgcgcggatgcaccacctcaacctggtgcggatgtgggggttctgcgcggacaaggagcagaggatgctggtgtacgagtatgtgccaaacggatcgctggacaagtacctgttcgctccaggcaccggcacccaaggagacgaagaagagagcaacaagcggcctctgcttgacctgcacacccgctaccgcatcgctctgggcgtggcgcgcgccatcgcgtaccttcacgaggagtgcctcgagtgggttctgcactgcgacatcaagcctgagaacatccttctggaggacgacttctgccccaaggtgtccgacttcgggctgtccaagctcaccagcaagaaggagaaggtgaccatgtcccgcatccgtggcacccgcgggtacatggcccccgagtgggtcatccaccgcgagcccatcaccgccaaggccgacgtctacagcttcggcatggttctgcttgagatcgtctccggccgccgcaactacggcttccgccaggactccgtcggcagcgaggactggtacttccccaagtgggccttcgagaaggtctacgtcgagcgccgcatcgacgacatcatcgaccctcgcatcgtccaggccgaggcctacgacgacgaccccgccagcctcgccaccgtcgagcgcatggtcaagacggccatgtggtgccttcaggaccgcgccgacatgaggccctccatgggcaaggtcgccaagatgctcgagggcaccgtcgagatcaccgagcccgtcaagcccaccatcttctgcgtccaggacgactga
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| Protein seq | MMGKLATVLLTGLEVRRVVGSIPNPKARNPIPFPNPASTTMAAAVLLLLLLLPALAAAQAQAQQMRTFSANDTNWSPAESNRTLVSNNGYFAAGFRPSPSSPAKFWFAVWVSANANESRPVVIWYAHKNNDHSAVEGDANSVLSIDAAGKLSWSDNGNSTTLWSPNSNSNSTSAPLSLNDSGSLDHGAWSSFGEPTDTLMASQAIPSISNGTTTTTTTSITLQSQNGRFQLVNALTLQHGSSAYANITGNTALRNLTADGTLQLAGGNPSQLIASDQGSTRLRRLTLDDDGNLRLYSLQSKKGQWRVVWQLVQELCTIRGACQGEANICVPQGADNTTCVCPPGYRPQGLGCAPKLNYSGKGNDDKFVRMDFVSFSGGADTGVSVPGKYMTSLTPQNLADCQSKCRANASCVAFGYKLGGDRTCLHYTRLVDGYWSPATEMSTYLRVVESNNDPNNFTGMTTMIDTVCPVRLALPVPPKQGRTTIRNIAIITALFAVELLAGVLSFWAFLRKYSQYREMARTLGLEYLPAGGPRRFSYAELKAATKEFSDMVGRGAYGKVYRGELPDRRAVAVKQLDGVGGGEAEFWAEVTIIARMHHLNLVRMWGFCADKEQRMLVYEYVPNGSLDKYLFAPGTGTQGDEEESNKRPLLDLHTRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLEDDFCPKVSDFGLSKLTSKKEKVTMSRIRGTRGYMAPEWVIHREPITAKADVYSFGMVLLEIVSGRRNYGFRQDSVGSEDWYFPKWAFEKVYVERRIDDIIDPRIVQAEAYDDDPASLATVERMVKTAMWCLQDRADMRPSMGKVAKMLEGTVEITEPVKPTIFCVQDD |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [UniProtKB/Swiss-Prot:Q9XID3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_10g0000050 | OsLiXu_10g0000050.01 | Chr10 | 235176 | 238016 | + | NAM | ||
| CDS seq | atgatgggcaaattggctacagtgttgttgactggactcgaggtgaggagagtcgtcggttcgatcccaaatccaaaagcaagaaatccaattcccttcccCaatccagcaagcacaaccatggcggccgctgtcctcctcctcctcctcctCCTaccggccctcgccgccgcccaggcccaggcccagcagatgcggaccttctccgccaacgacaccaattggagccccgccgagagcaaccgcaccctcgtctccaacaacgggtacttcgccgccggattccggccctccccCtcctccccagccaagttctggttcgccgtctgggtgagcgccaacgccaacgagtccaggccggtcgtcatatggtacgcccacaaaaacaacgaccactccgccgtggagggcgacgccaattccgtgctctccatcgacgcggcggggaagctgtcgtggagcgacaacggcaacagcaccaccctttggtcccccAACTCcaactccaactccacgagtgcccctttgtctctgaacgactcggggagcctcgaccacgGcgcctggtccagcttcggggagccgacggacacgctgatggcgtcgcaggccatccccagcattagcaacggcaccaccaccaccaccaccaccagcatcaccctgcagtcccagaacggcagattccagctggtcaacgccctcaccctgcagcacggctcctccgcctacgccaacatcaccggcaacaccgccctgcgcaacctcaccgccgacggcacgctgcaactcgctggtggcaatccctcccagctcatcgcctccgaccagggctccactcgcctgcgccgcctcaccctcgacgacgacggcaacctgcgcctctacagcctgcagtccaagaaagggcagtggcgggtggtatggcagctggtgcaggagctctgcaccatccggggcgcctgccaaggggaggccaacatctgcgtcccccaaggcgccgacaaCaccacctgcgtctgcccgccggggtaccgcccgcagggcctgggctgcgcccccaagcttaactacagcggcaagggcaacgacgacaagttcgtgcggatggatttcgtttccttctccggtggcgccgacaccggagtgtccgtccccggcaagtacatgaccagcctgacgccgcagaacctggcggactgccagagcaagtgccgggccaacgcctcttgcgtggccttcggctacaagttgggcggggaccggacgtgcctgcactacacgcggctggtggacggctactggtcgccggcgacggagatgtcgacctacctgcgggtggtggagtcgaacaacgacccgaacaacttcacggggatgacgacgatgatcgacacggtgtgcccggtgcggctggcgctgccggtgccgccgaagcaggggcggacgacgatccggaacatcgccatcatcacggcgctgttcgcggtggagctgctggcgggggtgctgtcgttctgggcgttcctgcgcaagtactcgcagtacagggagatggcgcggacgctggggctggagtacctccccgccggcgggccgcggcggttctcgtacgcggagctgaaggcggcgaccaaggagttctcggacatggtggggcgcggggcgtacgggaaggtgtaccgcggggagctgccggaccggcgggcggtggcggtgaagcagctggacggggtgggcgggggagaggcggagttctgggcggaggtgaccatcatcgcgcggatgcaccacctcaacctggtgcggatgtgggggttctgcgcggacaaggagcagaggatgctggtgtacgagtatgtgccaaacggatcgctggacaagtacctgttcgctccaggcaccggcacccaaggagacgaagaagagagcaacaagcggcctctgcttgacctgcacacccgctaccgcatcgctctgggcgtggcgcgcgccatcgcgtaccttcacgaggagtgcctcgagtgggttctgcactgcgacatcaagcctgagaacatccttctggaggacgacttctgccccaaggtgtccgacttcgggctgtccaagctcaccagcaagaaggagaaggtgaccatgtcccgcatccgtggcacccgcgggtacatggcccccgagtgggtcatccaccgcgagcccatcaccgccaaggccgacgtctacagcttcggcatggttctgcttgagatcgtctccggccgccgcaactacggcttccgccaggactccgtcggcagcgaggactggtacttccccaagtgggccttcgagaaggtctacgtcgagcgccgcatcgacgacatcatcgaccctcgcatcgtccaggccgaggcctacgacgacgaccccgccagcctcgccaccgtcgagcgcatggtcaagacggccatgtggtgccttcaggaccgcgccgacatgaggccctccatgggcaaggtcgccaagatgctcgagggcaccgtcgagatcaccgagcccgtcaagcccaccatcttctgcgtccaggacgactga
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| Protein seq | MMGKLATVLLTGLEVRRVVGSIPNPKARNPIPFPNPASTTMAAAVLLLLLLLPALAAAQAQAQQMRTFSANDTNWSPAESNRTLVSNNGYFAAGFRPSPSSPAKFWFAVWVSANANESRPVVIWYAHKNNDHSAVEGDANSVLSIDAAGKLSWSDNGNSTTLWSPNSNSNSTSAPLSLNDSGSLDHGAWSSFGEPTDTLMASQAIPSISNGTTTTTTTSITLQSQNGRFQLVNALTLQHGSSAYANITGNTALRNLTADGTLQLAGGNPSQLIASDQGSTRLRRLTLDDDGNLRLYSLQSKKGQWRVVWQLVQELCTIRGACQGEANICVPQGADNTTCVCPPGYRPQGLGCAPKLNYSGKGNDDKFVRMDFVSFSGGADTGVSVPGKYMTSLTPQNLADCQSKCRANASCVAFGYKLGGDRTCLHYTRLVDGYWSPATEMSTYLRVVESNNDPNNFTGMTTMIDTVCPVRLALPVPPKQGRTTIRNIAIITALFAVELLAGVLSFWAFLRKYSQYREMARTLGLEYLPAGGPRRFSYAELKAATKEFSDMVGRGAYGKVYRGELPDRRAVAVKQLDGVGGGEAEFWAEVTIIARMHHLNLVRMWGFCADKEQRMLVYEYVPNGSLDKYLFAPGTGTQGDEEESNKRPLLDLHTRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLEDDFCPKVSDFGLSKLTSKKEKVTMSRIRGTRGYMAPEWVIHREPITAKADVYSFGMVLLEIVSGRRNYGFRQDSVGSEDWYFPKWAFEKVYVERRIDDIIDPRIVQAEAYDDDPASLATVERMVKTAMWCLQDRADMRPSMGKVAKMLEGTVEITEPVKPTIFCVQDD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.389928 | 0.0 | 0.243094 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0101000 | RBH | 0.745062 | 1.068629 | 2.314481 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g01100 | RBH | 0.615290 | 0.684865 | 0.676450 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0101000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0000050 | RBH | 0.066869 | 18.519192 | 2.663283 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0000050 | RBH | 0.045219 | 2.147098 | 1.425304 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0000050 | RBH | 1.488675 | 12.786635 | 2.090080 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0000080 | RBH | 0.058622 | 0.553621 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0000050 | RBH | 3.677423 | 10.202538 | 9.270295 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0005600 | RBH | 5.7474995 | 25.314106 | 4.281272 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0000050 | RBH | 0.201635 | 0.601971 | 0.390427 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0002000 | RBH | 3.9070675 | 22.61259 | 3.330002 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0000040 | RBH | 0.029064 | 0.396683 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0000050 | RBH | 0.440705 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0000050 | RBH | 4.975147 | 14.439178 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0053880 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0000050 | RBH | 0.228408 | 4.793500 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G000050 | RBH | 0.276258 | 2.511467 | 1.208584 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0000050 | RBH | 1.085116 | 11.868616 | 1.933967 |
