Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_09g0015980 | OGI:07002360 | 7/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr09:20654800-20656298 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctacacgggccgtatcgcatgtacaccgtagccggagagcaactcgaactcgtcgagcagcgaccacacaaagtaccccgcgttcgatccgctcctgcacccgtcggtcgccggcgaaccgagaaactaattaagcatactctagctgaagtccaaatgtatggaatatatattgcaatataatggctttctaatttctaatattgttccgaactatcatcccaaaaatattatttattgtacacgttccatctctcaaacgaacattccaaagaggaggtataccgtcctatggtttcttgaagtatcgtcctaagaattttgtgacttatttctaggatcaaagttaaaatattttataatttaaaacagagagagtagctacgaagtacgtggtcagtacatgtccgtacatagacatggacttttttagaagaaaaaaacaaataaaaagataacgacagcaacagcgaaatgtcataggtgatacaacggagtgtagtaactcaaattgatcaccatttctgaattccggctgcttctgatcgcttctcctctcttcgtgattctgtccaatttttccatttacattcatgcatccatcctttggacttctagtcgccttcttctagaaggccaggtcatttttatttttaaccaattgcgtggagaggtgaaactttccactttcgtgtagtaaaaagggaaaaaaagatattaccccttttatttctagggacaatttgaaccatccacataaattttacaaaatttatgatatgccaccctgacccatatgtcattgacttatgtgggtcctacgtgtcattgagatacgggtgacatatctcaaattttgtaaatatagggtggtatagttccaacaaacccttatttctatatgacgttggttaattcatcgtattaaaaataaaaggaagtactagtacttcctccgtattttaatgtaggcaaattttgctacaagacactatgatttcgtggttttagccgtgagacattgcccaaactcacttctagggaaaaacactccataacatggtaatttgccaatggacaccgcgccatataaaataatgatttccggttgagaaggagagagaaatcacgtgaaatgtcaaaaatacccttgggcccacatgtcaactctccatctctcttccttttttcctctctctctcttctccggtcatggcttgctcggcgacggcggtgacgcccgtagcgcgcgcggcctactcggcaccggtggccgatggaggacctcctcctccacacctgacaccggtggccgcctcaccgtgctcgacacgctcgccaacatcagtttgctcgtcctcgccggcggggatctcgagcgccctggagcgggcgcgccagacgaacgccgcgccacaagcacgtcgaagctcgtcgcgcggccacggaggtgcggtggcgacgtcgccggggctgaaagaaaaggtgcgcatgaccat
More
|
||||||||||
| CDS seq | atggtcatgcgcaccttttctttcagccccggcgacgtcgccaccgcacctccgtggccgcgcgacgagcttcgacgtgcttgtggcgcggcgttcgtctggcgcgcccgctccagggcgctcgagatccccgccggcgaggacgagcaaactgatgttggcgagcgtgtcgagcacggtgaggcggccaccggtgtcaggagcggatcgaacgcggggtactttgtgtggtcgctgctcgacgagttcgagttgctctccggctacggtgtacatgcgatacggcccgtgtag |
||||||||||
| Protein seq | MVMRTFSFSPGDVATAPPWPRDELRRACGAAFVWRARSRALEIPAGEDEQTDVGERVEHGEAATGVRSGSNAGYFVWSLLDEFELLSGYGVHAIRPV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_09g0015980 | OsLiXu_09g0015980.01 | Chr09 | 20654800 | 20656298 | - | NAM | ||
| CDS seq | atggtcatgcgcaccttttctttcagccccggcgacgtcgccaccgcacctccgtggccgcgcgacgagcttcgacgtgcttgtggcgcggcgttcgtctggcgcgcccgctccagggcgctcgagatccccgccggcgaggacgagcaaactgatgttggcgagcgtgtcgagcacggtgaggcggccaccggtgtcaggagcggatcgaacgcggggtactttgtgtggtcgctgctcgacgagttcgagttgctctccggctacggtgtacatgcgatacggcccgtgtag
More
|
|||||||
| Protein seq | MVMRTFSFSPGDVATAPPWPRDELRRACGAAFVWRARSRALEIPAGEDEQTDVGERVEHGEAATGVRSGSNAGYFVWSLLDEFELLSGYGVHAIRPV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g33700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0016240 | SBH | 4.134869 | 18.089085 | 15.700028 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0016240 | SBH | 1.288389 | 5.193058 | 17.760221 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0016480 | SBH | 7.550661 | 13.243814 | 42.309147 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0016230 | SBH | 1.109447 | 0.339487 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0016360 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0333000 | RBH | 9.016961 | 20.55485 | 11.038264 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0016230 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0321900 | SBH | 13.1202265 | 12.592566 | 3.5305735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0016230 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0016040 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0016150 | SBH | 9.092785 | 11.447709 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0053490 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0016110 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G016530 | SBH | 2.458987 | 0.279646 | 8.491549 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0016330 | SBH | 1.955314 | 10.197274 | 22.170748 |
