Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_09g0012070 | OGI:09005370 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr09:17420245-17422951 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgttgtgtgctgatgctttaaacaagaagtttggtatgggggtgactgccgatcaagtggatcgtcactacaggtatcacaaagaaaattggaagtatattgcagcagcattgagcaagagtggcaacgcatttgaccatacaagattcttggtgactatttcagaatctgaaaaggcaacgctatgtgtaagttttgtacaaaattgacatgtttgcatgttacattttagaatctgaactgcatatagcaatttaacatgtttgctctttatgcaggatagagcaagacgcctactctctaagcccatcagattctttaatgagatgcaggagctattcatgggatctagtgccgatggttctttggctatggatcaaaacacatgcatgaacgatagtgatggttcagatagcgatgattcaagagatatgcttgacctcaactgctacacacaacctgaagagccaactggtgaggattctgacactttgccatctccaaccacgaatgcaactgttgacaactcttccagcggtagtcgaggtaaaaagaagcgtccaagaggcaacaaatcaccagctaagaagccacaaaaaagcaagagtcgctttgccgagtccaatgatgaaatcgctactacgatgaaatcacttcgagaaacacttgctaccacaactcctccaccaatggcacagcttactgatccacatgcaattctgtggcagaaactagaggcaatcccaatgacacctgatcaaagggttcttgttggtgagtatttgtttgacaaggagaataaaggtaagcgtggttggttgtgcaatgtgagtgatgctacactgtaagcgtggttggttgtgctgatgctacactgaatgcttgggttcaagttcttatgtgagaaagatgggcttaacctatgaagcatagcttgttaaagtagttttttggcgaactgtctgtgtgatgtgcacatgaacttctgtatggctgtgcactcattttggctttgtgttataaggaatgatggctagaatatatgtattagctgttggttgtctaattttagcagtgtggtcatgacaaatggctagaaaatgtcattgaaatagttttagttggatggttgttgatattattgtaatagctcaactagtgttactggagtgttatctttagctggactaatatttcaatatatgtgcactttaattccaatctacttatatacattttgctgctgaaatgtgattgctttgtgaggagggtaatcttaccactgggtgtttttatcaagatgtggttgcaatccaaacatctaccacaaatttttgccaaacatttgtggcatcaatccaaacagcacccacaatatttttgccacaccttagttgcaaaccaaacagtctaatttagccacaaagtatggctagccaccattgtgacaaattcttaagcttaggggtggcaatgtttggccgggaaccaaacagacccagtatttgctaggatacattagAaaaaaaaatgtgttgtgtactgatatgtaactgttgagtaaattgttgtcacatcagtggttaagtggttcacttggtgtcaagcaaagtggcacgattcagcctgatgtgttttgtttggtagtatatatgtatcggctacccttaaaattttgaaaagagctgtgtgcataatctttttttcctgttctaattcctgggtcgactagatacaaacagtgtgcaatgtatgtattttatttaccaaaggatttcatttcatctgggaggatgaaatgattctgccattctggtattggcaccgtactcaggaaggagtacccagatagtgatgttgacacttagtttttccctcaccgaagatttctgatgttgtggtggaccctacaatgccacacaatctgttcatcagctcgttgagaatgctgatggtgcatggtccttgacaatgaagctctgtgaaatctgcttcttcacactgaaaagcttactacactcgcttgtgagtgaaaacataccataattggactactgttgcttgattaccatactctgctccctgtagttattgatcattcattctatcctggttcactatagcagttcataatcaacttactctcttttgtggcagtaacgaaattgtgttccatgttttcaattgtgtattttctgcatccttttcaccacattaatgagtacgttttgcatgagttcaattatcactgataccaatctgttgttgctgtgtaatcaaaatattttgatccgggaggttatgcttggtagcatacaaacaattattatttatattattcaatgaatcaccccttcaataccacttcaatacctctgtgagcttaatctaatgagattttgatggatatgttgcagtggtattgaagctaagtggactaattctgccatccatgagtgtggagaagattgctgcctttgtgtccaatgattgttgcctcaacttcatcgaggataatgtacatttttcatcctgtattttcttgaatgcctgctccatcccttatttattttgtcattatccaggacaaggtattagattgctggatttggtcgcaagggtcatgctgtgggagatattcttggtgtccaattcaaagttgtcaaggtgtctggtgtctctcaccttcctctatcaaggaggtga
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| CDS seq | atgttgtgtgctgatgctttaaacaagaagtttggtatgggggtgactgccgatcaagtggatcgtcactacaggtatcacaaagaaaattggaagtatattgcagcagcattgagcaagagtggcaacgcatttgaccatacaagattcttggtgactatttcagaatctgaaaaggcaacgctatgtgatagagcaagacgcctactctctaagcccatcagattctttaatgagatgcaggagctattcatgggatctagtgccgatggttctttggctatggatcaaaacacatgcatgaacgatagtgatggttcagatagcgatgattcaagagatatgcttgacctcaactgctacacacaacctgaagagccaactggtgaggattctgacactttgccatctccaaccacgaatgcaactgttgacaactcttccagcggtagtcgaggtaaaaagaagcgtccaagaggcaacaaatcaccagctaagaagccacaaaaaagcaagagtcgctttgccgagtccaatgatgaaatcgctactacgatgaaatcacttcgagaaacacttgctaccacaactcctccaccaatggcacagcttactgatccacatgcaattctgtggcagaaactagaggcaatcccaatgacacctgatcaaagggttcttgttggtgagtatttgtttgacaaggagaataaagtggtattgaagctaagtggactaattctgccatccatgagtgtggagaagattgctgcctttgtgtccaatgattgttgcctcaacttcatcgaggataatattgctggatttggtcgcaagggtcatgctgtgggagatattcttggtgtccaattcaaagttgtcaaggtgtctggtgtctctcaccttcctctatcaaggaggtga
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| Protein seq | MLCADALNKKFGMGVTADQVDRHYRYHKENWKYIAAALSKSGNAFDHTRFLVTISESEKATLCDRARRLLSKPIRFFNEMQELFMGSSADGSLAMDQNTCMNDSDGSDSDDSRDMLDLNCYTQPEEPTGEDSDTLPSPTTNATVDNSSSGSRGKKKRPRGNKSPAKKPQKSKSRFAESNDEIATTMKSLRETLATTTPPPMAQLTDPHAILWQKLEAIPMTPDQRVLVGEYLFDKENKVVLKLSGLILPSMSVEKIAAFVSNDCCLNFIEDNIAGFGRKGHAVGDILGVQFKVVKVSGVSHLPLSRR |
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| Function | 40S ribosomal protein S23 [UniProtKB/Swiss-Prot:P46297] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_09g0012070 | OsLiXu_09g0012070.01 | Chr09 | 17420245 | 17422951 | + | NAM | ||
| CDS seq | atgttgtgtgctgatgctttaaacaagaagtttggtatgggggtgactgccgatcaagtggatcgtcactacaggtatcacaaagaaaattggaagtatattgcagcagcattgagcaagagtggcaacgcatttgaccatacaagattcttggtgactatttcagaatctgaaaaggcaacgctatgtgatagagcaagacgcctactctctaagcccatcagattctttaatgagatgcaggagctattcatgggatctagtgccgatggttctttggctatggatcaaaacacatgcatgaacgatagtgatggttcagatagcgatgattcaagagatatgcttgacctcaactgctacacacaacctgaagagccaactggtgaggattctgacactttgccatctccaaccacgaatgcaactgttgacaactcttccagcggtagtcgaggtaaaaagaagcgtccaagaggcaacaaatcaccagctaagaagccacaaaaaagcaagagtcgctttgccgagtccaatgatgaaatcgctactacgatgaaatcacttcgagaaacacttgctaccacaactcctccaccaatggcacagcttactgatccacatgcaattctgtggcagaaactagaggcaatcccaatgacacctgatcaaagggttcttgttggtgagtatttgtttgacaaggagaataaagtggtattgaagctaagtggactaattctgccatccatgagtgtggagaagattgctgcctttgtgtccaatgattgttgcctcaacttcatcgaggataatattgctggatttggtcgcaagggtcatgctgtgggagatattcttggtgtccaattcaaagttgtcaaggtgtctggtgtctctcaccttcctctatcaaggaggtga
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| Protein seq | MLCADALNKKFGMGVTADQVDRHYRYHKENWKYIAAALSKSGNAFDHTRFLVTISESEKATLCDRARRLLSKPIRFFNEMQELFMGSSADGSLAMDQNTCMNDSDGSDSDDSRDMLDLNCYTQPEEPTGEDSDTLPSPTTNATVDNSSSGSRGKKKRPRGNKSPAKKPQKSKSRFAESNDEIATTMKSLRETLATTTPPPMAQLTDPHAILWQKLEAIPMTPDQRVLVGEYLFDKENKVVLKLSGLILPSMSVEKIAAFVSNDCCLNFIEDNIAGFGRKGHAVGDILGVQFKVVKVSGVSHLPLSRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0012270 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0011350 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0278100 | RBH | 0 | 0.0054015 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0012330 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0267600 | RBH | 0 | 0.0263135 | 0.0133355 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0012300 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0012090 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0012190 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0026900 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0012110 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G012610 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0012390 | SBH | 0.0 | 0.0 | 0.0 |
