Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_09g0011610 | OGI:09047930 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr09:17028648-17030366 | ||||||||
| Gene Symbol | RLCK272, OsRLCK272, PTK14, OsPTK14 | ||||||||||
| DNA seq | agcatggagcatccttttaactagaccatttgattgcgtacaacatccaacaatccttgcaaatccaagcctaacttttcatcacactattttgcattcctgtattatcttacacccAcccactgtcaccatcaagaagaaagctaaaaaatgacaacaccaaaaactaaacccaatcaaatgtggcattctgccacaccctcaccagcatatgtacatgcatgacttttttctcctactctgttCcccacctctattcctatgctcccctctccttgttgtagctcgccgtcctccggtgtcgtcgcagcgcaccggtgtaccctcctccgatgacaccatcacggtcatgcagcacaatgccagcgtgaatcgccgagtctgggtacttctgtcgatgcctgtcctgatggttttggtgagtgtttttcttctcctcaacctcaaccttcatgttaaccaccttctcgtcctccacaatgacagtgaagacaaatgggccaactgggaagaagtcatccatgccaagcacaggctccagggctttgacaacctccctcattgtgggcctggacttagggttctcactcagacacttgtacgccaccaatgccgccacctcagcaccctggcacgagtactggcactcgagagcagggtccataaccttgtacaatttatcggcccacttgagatatggtctagcccaatccaccaggctttgttctctcgggcgtcgagagcggtccactgactttcgccccgagagaagttccaacaataccactccaaaactatacacatcgctcttagctgttaaatgccccgtcatgatgtactcaggagctgcatatccatgtgttcccatgacacgtgtcgttacgtgcgtagcgtcaccctggggcccatccttagctaggccaaagtcggacagcttggtattgtaatcctgaaaacacacaagttgagatttagtaatgtgaatggaagtgggatatcaagatatcacttgcaaagctattcatgtattaataatccgtgggctactTGGGTGAGGTGGATAATGACGGCTAGATATTTTTGATTAGGTGAATGATGTGAGGGCAGGATTGCTAGGATTTCTGAAGTTTGGCATGCATCTTCCAAAGTTCTAATCAGCCAGGTCAAGGCTTTTGCCCATAACGAACTGGGCCcactgcaagcatagttcagaaacgtgtggcgcagctggatatttttgcacggtcattgggatgattcaAttggtcaaaaagtttaaattctcgatcAaaaaatgaagtcattttttgcgaaggttgtttgtggcagccttgaatttgggccccaaacatttactaatttcgcattcatccagaaGtgacgtgtgctgcctgactgaccccatttgttggtaactgaacttactgttcccAaatgaaagggacatttcagAaaccgtgtcatttcttgacaatgtggtgtttgaactttgaactgtaagttctaatctaccattggaaTaaatgaataacaattacactacattggaactgaattgtagggtggctcaccaggtcaagtaagatgttggatgccttgaaatcgcggtagatcaccggcggatcggcatcatggaggaatgcgaggcctttcgccgcgccgagggcaatcttcatccttgtcatccatggaaGagaaccattgacagctgcaggagat
More
|
||||||||||
| CDS seq | atgacaaggatgaagattgccctcggcgcggcgaaaggcctcgcattcctccatgatgccgatccgccggtgatctaccgcgatttcaaggcatccaacatcttacttgacctggattacaataccaagctgtccgactttggcctagctaaggatgggccccagggtgacgctacgcacgtaacgacacgtgtcatgggaacacatggatatgcagctcctgagtacatcatgacggggcatttaacagctaagagcgatgtgtatagttttggagtggtattgttggaacttctctcggggcgaaagtcagtggaccgctctcgacgcccgagagaacaaagcctggtggattgggctagaccatatctcaagtgggccgataaattgtacaaggttatggaccctgctctcgagtgccagtactcgtgccagggtgctgaggtggcggcattggtggcgtacaagtgtctgagtgagaaccctaagtccaggcccacaatgagggaggttgtcaaagccctggagcctgtgcttggcatggatgacttcttcccagttggcccatttgtcttcactgtcattgtggaggacgagaaggtggttaacatgaaggttgaggttgaggagaagaaaaacactcaccaaaaccatcaggacaggcatcgacagaagtacccagactcggcgattcacgctggcattgtgctgcatgaccgtgatggtgtcatcggaggagggtacaccggtgcgctgcgacgacaccggaggacggcgagctacaacaaggagaggggagcatag
More
|
||||||||||
| Protein seq | MTRMKIALGAAKGLAFLHDADPPVIYRDFKASNILLDLDYNTKLSDFGLAKDGPQGDATHVTTRVMGTHGYAAPEYIMTGHLTAKSDVYSFGVVLLELLSGRKSVDRSRRPREQSLVDWARPYLKWADKLYKVMDPALECQYSCQGAEVAALVAYKCLSENPKSRPTMREVVKALEPVLGMDDFFPVGPFVFTVIVEDEKVVNMKVEVEEKKNTHQNHQDRHRQKYPDSAIHAGIVLHDRDGVIGGGYTGALRRHRRTASYNKERGA |
||||||||||
| Function | Serine/threonine-protein kinase RIPK [UniProtKB/Swiss-Prot:Q9ZUF4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_09g0011610 | OsLiXu_09g0011610.01 | Chr09 | 17028648 | 17030366 | - | NAM | ||
| CDS seq | atgacaaggatgaagattgccctcggcgcggcgaaaggcctcgcattcctccatgatgccgatccgccggtgatctaccgcgatttcaaggcatccaacatcttacttgacctggattacaataccaagctgtccgactttggcctagctaaggatgggccccagggtgacgctacgcacgtaacgacacgtgtcatgggaacacatggatatgcagctcctgagtacatcatgacggggcatttaacagctaagagcgatgtgtatagttttggagtggtattgttggaacttctctcggggcgaaagtcagtggaccgctctcgacgcccgagagaacaaagcctggtggattgggctagaccatatctcaagtgggccgataaattgtacaaggttatggaccctgctctcgagtgccagtactcgtgccagggtgctgaggtggcggcattggtggcgtacaagtgtctgagtgagaaccctaagtccaggcccacaatgagggaggttgtcaaagccctggagcctgtgcttggcatggatgacttcttcccagttggcccatttgtcttcactgtcattgtggaggacgagaaggtggttaacatgaaggttgaggttgaggagaagaaaaacactcaccaaaaccatcaggacaggcatcgacagaagtacccagactcggcgattcacgctggcattgtgctgcatgaccgtgatggtgtcatcggaggagggtacaccggtgcgctgcgacgacaccggaggacggcgagctacaacaaggagaggggagcatag
More
|
|||||||
| Protein seq | MTRMKIALGAAKGLAFLHDADPPVIYRDFKASNILLDLDYNTKLSDFGLAKDGPQGDATHVTTRVMGTHGYAAPEYIMTGHLTAKSDVYSFGVVLLELLSGRKSVDRSRRPREQSLVDWARPYLKWADKLYKVMDPALECQYSCQGAEVAALVAYKCLSENPKSRPTMREVVKALEPVLGMDDFFPVGPFVFTVIVEDEKVVNMKVEVEEKKNTHQNHQDRHRQKYPDSAIHAGIVLHDRDGVIGGGYTGALRRHRRTASYNKERGA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.932865 | 0.0 | 1.517560 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0442100 | RBH | 0.966086 | 1.335190 | 1.013073 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g27010 | SBH | 0.648916 | 0.891976 | 0.259027 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0442100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0011920 | SBH | 0.0 | 4.420215 | 4.060912 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0011830 | SBH | 0.000000 | 3.271033 | 4.330702 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0012110 | SBH | 0.630315 | 8.115993 | 7.046134 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0011880 | SBH | 0.040041 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0011990 | SBH | 1.763339 | 3.376945 | 10.955480 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0271600 | SBH | 10.795248 | 7.8937215 | 2.367634 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0011950 | SBH | 0.265688 | 0.270181 | 0.345541 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0261300 | SBH | 9.646497 | 6.9881505 | 0.373315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0011920 | SBH | 0.0 | 0.358753 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0011700 | SBH | 0.204829 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0011790 | SBH | 1.331674 | 3.569390 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0018500 | SBH | 0.0 | 0.203675 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0011710 | RBH | 0.537358 | 2.697437 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G012210 | SBH | 0.000000 | 0.0 | 1.091937 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0011990 | SBH | 0.000000 | 4.421762 | 3.848159 |
