Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_09g0008470 | OGI:09037990 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr09:13527789-13529193 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agttgtacgcgcgcagcatgcattttatttaggcacggtccacaattcatacatgtatagtggatacgtctcgttggcagacactcacggtatagtagggtagttgtgtgtacagtgatatagtcatatctgcgcgtcttttcatgccgttcgttgacttcgttcacagggtcagggtcgggtaggcgatatcgagtgtgacgcCAcacaggccggggccaccgacgtcgcggagaatccggatgtagccgcgctcgccccatgactggccccatgagttcttgatggtccagtacttggcgccggaagacgcgtcggtgccgtacccgacgacggtgacggcgtgcgctaggcgcgtgccgcacgggcccgtgtaaacgccacccttgtagaactgcatcccactaccgacctcgatggccacagccacgggctgccgagcgacggcggcctgcaacgccgcctcgttccgcggcggcaccttcccgaagccggtgatcttggcggcatggtgcgcggacttggcgcggttgcaggggccccgccgcgccgtgtacgggtagtccgcctccgtggtgaggccaccgttctcgacaacccatttgtacgcccgcccgtacgaccctaagttgcagccgccgtcatagctgtcgcagtccaccagctgctgctccgacagagagaccagcttccccgtcttgatcatgttcaggctctcgatggtcgccgctgtcacgaacgcccagcagctacctgcaGgcgtacgtaacgtaggtccaatgcaattaataattaaggtatattttacgtttgaaatggaaccatgtgtgaaatttacacgtactgcatgttgacgTttgggacttgggaggcacaacggcgccttgggccctccagtcgacactggccggaacgtccacgcggtaggagaagctggcgtcgacgtctccggcacccgtcgtgataacggagtcgtccacggggccatcgccggcgtagtacccggtgtacgtggccaggaactcctcctcggtgaggtctgcgaactcgttctcggcgagctggtaagtgaggtcgccgcgcaggttgacggcgtcgatgaactccgcgttgcggcggtacacatcgaaccgctgcagcgcctcttctgcgctcgggtacgatcggttgtgagctccctgccaagcgcggaacctgtccatcatcaccatgtcgccgacgtccaagcagctgcccgccgtcgcacgcgccgggagcatggaggtggcgagaagggcaccgcacgacgcgagcagggccagcgtgagtaccggtggcgaggcgcacgccatgaatggtgccatggcatgcacctaacttgtgggtaagtacgcgttccaccgttcaatattccacttctggtcga
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| CDS seq | atggcaccattcatggcgtgcgcctcgccaccggtactcacgctggccctgctcgcgtcgtgcggtgcccttctcgccacctccatgctcccggcgcgtgcgacggcgggcagctgcttggacgtcggcgacatggtgatgatggacaggttccgcgcttggcagggagctcacaaccgatcgtacccgagcgcagaagaggcgctgcagcggttcgatgtgtaccgccgcaacgcggagttcatcgacgccgtcaacctgcgcggcgacctcacttaccagctcgccgagaacgagttcgcagacctcaccgaggaggagttcctggccacgtacaccgggtactacgccggcgatggccccgtggacgactccgttatcacgacgggtgccggagacgtcgacgccagcttctcctaccgcgtggacgttccggccagtgtcgactggagggcccaaggcgccgttgtgcctcccaagtcccaaAcgtcaacatgcagtagctgctgggcgttcgtgacagcggcgaccatcgagagcctgaacatgatcaagacggggaagctggtctctctgtcggagcagcagctggtggactgcgacagctatgacggcggctgcaacttagggtcgtacgggcgggcgtacaaatgggttgtcgagaacggtggcctcaccacggaggcggactacccgtacacggcgcggcggggcccctgcaaccgcgccaagtccgcgcaccatgccgccaagatcaccggcttcgggaaggtgccgccgcggaacgaggcggcgttgcaggccgccgtcgctcggcagcccgtggctgtggccatcgaggtcggtagtgggatgcagttctacaagggtggcgtttacacgggcccgtgcggcacgcgcctagcgcacgccgtcaccgtcgtcgggtacggcaccgacgcgtcttccggcgccaagtactggaccatcaagaactcatggggccagtcatggggcgagcgcggctacatccggattctccgcgacgtcggtggccccggcctgtgTGgcgtcacactcgatatcgcctacccgaccctgaccctgtga
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| Protein seq | MAPFMACASPPVLTLALLASCGALLATSMLPARATAGSCLDVGDMVMMDRFRAWQGAHNRSYPSAEEALQRFDVYRRNAEFIDAVNLRGDLTYQLAENEFADLTEEEFLATYTGYYAGDGPVDDSVITTGAGDVDASFSYRVDVPASVDWRAQGAVVPPKSQTSTCSSCWAFVTAATIESLNMIKTGKLVSLSEQQLVDCDSYDGGCNLGSYGRAYKWVVENGGLTTEADYPYTARRGPCNRAKSAHHAAKITGFGKVPPRNEAALQAAVARQPVAVAIEVGSGMQFYKGGVYTGPCGTRLAHAVTVVGYGTDASSGAKYWTIKNSWGQSWGERGYIRILRDVGGPGLCGVTLDIAYPTLTL |
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| Function | Senescence-specific cysteine protease SAG12 [UniProtKB/Swiss-Prot:Q9FJ47] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_09g0008470 | OsLiXu_09g0008470.01 | Chr09 | 13527833 | 13529187 | - | NAM | ||
| CDS seq | atggcaccattcatggcgtgcgcctcgccaccggtactcacgctggccctgctcgcgtcgtgcggtgcccttctcgccacctccatgctcccggcgcgtgcgacggcgggcagctgcttggacgtcggcgacatggtgatgatggacaggttccgcgcttggcagggagctcacaaccgatcgtacccgagcgcagaagaggcgctgcagcggttcgatgtgtaccgccgcaacgcggagttcatcgacgccgtcaacctgcgcggcgacctcacttaccagctcgccgagaacgagttcgcagacctcaccgaggaggagttcctggccacgtacaccgggtactacgccggcgatggccccgtggacgactccgttatcacgacgggtgccggagacgtcgacgccagcttctcctaccgcgtggacgttccggccagtgtcgactggagggcccaaggcgccgttgtgcctcccaagtcccaaAcgtcaacatgcagtagctgctgggcgttcgtgacagcggcgaccatcgagagcctgaacatgatcaagacggggaagctggtctctctgtcggagcagcagctggtggactgcgacagctatgacggcggctgcaacttagggtcgtacgggcgggcgtacaaatgggttgtcgagaacggtggcctcaccacggaggcggactacccgtacacggcgcggcggggcccctgcaaccgcgccaagtccgcgcaccatgccgccaagatcaccggcttcgggaaggtgccgccgcggaacgaggcggcgttgcaggccgccgtcgctcggcagcccgtggctgtggccatcgaggtcggtagtgggatgcagttctacaagggtggcgtttacacgggcccgtgcggcacgcgcctagcgcacgccgtcaccgtcgtcgggtacggcaccgacgcgtcttccggcgccaagtactggaccatcaagaactcatggggccagtcatggggcgagcgcggctacatccggattctccgcgacgtcggtggccccggcctgtgTGgcgtcacactcgatatcgcctacccgaccctgaccctgtga
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| Protein seq | MAPFMACASPPVLTLALLASCGALLATSMLPARATAGSCLDVGDMVMMDRFRAWQGAHNRSYPSAEEALQRFDVYRRNAEFIDAVNLRGDLTYQLAENEFADLTEEEFLATYTGYYAGDGPVDDSVITTGAGDVDASFSYRVDVPASVDWRAQGAVVPPKSQTSTCSSCWAFVTAATIESLNMIKTGKLVSLSEQQLVDCDSYDGGCNLGSYGRAYKWVVENGGLTTEADYPYTARRGPCNRAKSAHHAAKITGFGKVPPRNEAALQAAVARQPVAVAIEVGSGMQFYKGGVYTGPCGTRLAHAVTVVGYGTDASSGAKYWTIKNSWGQSWGERGYIRILRDVGGPGLCGVTLDIAYPTLTL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_09g0008470 | OsLiXu_09g0008470.02 | Chr09 | 13527789 | 13529193 | - | IsoSeq | ||
| CDS seq | atgtgtaccgccgcaacgcggagttcatcgacgccgtcaacctgcgcggcgacctcacttaccagctcgccgagaacgagttcgcagacctcaccgacgcgtcttccggcgccaagtactggaccatcaagaactcatggggccagtcatggggcgagcgcggctacatccggattctccgcgacgtcggtggccccggcctgtgTGgcgtcacactcgatatcgcctacccga
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| Protein seq | MCTAATRSSSTPSTCAATSLTSSPRTSSQTSPTRLPAPSTGPSRTHGASHGASAATSGFSATSVAPACVASHSISPTR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 11.474059 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0381400 | RBH | 0.618085 | 0.000000 | 118.546928 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g21370 | RBH | 0.000000 | 0.0 | 19.603275 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0381400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0008570 | RBH | 0.000000 | 1.218259 | 57.389248 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0008550 | RBH | 0.000000 | 0.000000 | 45.210125 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0008780 | RBH | 0.000000 | 0.000000 | 66.125084 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0008590 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0008790 | RBH | 0.000000 | 3.163757 | 137.700363 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0218900 | RBH | 0 | 0.0253665 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0008730 | RBH | 0.000000 | 0.000000 | 15.246854 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0200300 | RBH | 0.0140735 | 0.095089 | 0.1352445 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0008710 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0008520 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0008430 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0052110 | RBH | 0.000000 | 0.0 | 3.568701 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0008470 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G009000 | RBH | 0.000000 | 0.000000 | 24.822929 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0008770 | RBH | 0.000000 | 3.021610 | 161.688568 |
