Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_09g0004770 | OGI:04044150 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr09:8767758-8769006 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctataacagagtttctgttattcgtattaacagctactctaggggaaatgtttttatgtggtgctaacgatttaataactatatttgtagctccagaatgtttcagtatatgttcctacctattgtctggatataccaagagagatctacggtctaatgaggctactatgaaattttactcatgggtggggcaagctcttctattctggttcatggtttttcttggctatatggttcatctGggggggagatcgagcttcaagaaattgtgaacggtcttatcaatactcaaatgtataactccccaggaatttcaattgcgcttatatccatcactgtaggacttgggttcaagctttccccagccccttttcatcaatggactcctgacgtctacgaaggaatgtggttcgttcaaaaaattcctacctctatatctatctctgaggtgtttgggttttgcaaaactccatagatatgcagaagagaaatgctatccccactccgaccaagacagaacttttaccaaaagtttattgtgatatttttgttcaaataacaattaaggtgaagcaaggtcaggaacaacgaatctctttatgataaacatatccattttgcaagctcgttattacgggtagttcctacaaataatcggactaatgacgtatacaatgcttgaattatcgacgtagatgctacatagtgggttttcatccttcagagactacgagtgtaataggagcatccgttgacaaaaggatcaccctaagatgatcatctcatggctattgggaacgaatcaaatcagatggttctatttctcaacctttctgacttgctcctacggaaccaaggttgaaaggattgaaaaagtcagtcattcacaaccactgatgaaggattcctcgaaaagttaaggattagtagttctttttcgaaatcgatttcgaaaaagaatggattcggtcttgtacatacgcgaggaaggtaatcaaaaaagaaagaagacaagttcttctttcttttatcacttaggagccgtgcgagatgaaagtctcatgcacggttttgcatgagagaaagaagcgaggaatcctcttttcgactctgactcccccactccagtcgttgcttttctttctgttacttcgaaagttgctgcttcagcttcagccacgcgaattctcgatattcctttttatttctcatcaaacgaatggcatcttcttctggaaatcctag
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| CDS seq | atggctataacagagtttctgttattcgtattaacagctactctaggggaaattatatgttcctacctattgtctggatataccaagagagatctacggtctaatgaggctactatgaaattttactcatgggtggggcaagctcttctattctggttcatgatcgagcttcaagaaattgtgaacggtcttatcaatactcaaatgtataactccccaggaatttcaattgcgcttatatccatcactgtaggacttgggttcaagctttccccagccccttttcatcaatggactcctgacgtctacgaaggaatgtggttcgttcaaaaaattcctacctctatatctatctctgagcttcagccacgcgaattctcgatattcctttttatttctcatcaaacgaatggcatcttcttctggaaatcctag
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| Protein seq | MAITEFLLFVLTATLGEIICSYLLSGYTKRDLRSNEATMKFYSWVGQALLFWFMIELQEIVNGLINTQMYNSPGISIALISITVGLGFKLSPAPFHQWTPDVYEGMWFVQKIPTSISISELQPREFSIFLFISHQTNGIFFWKS |
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| Function | NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic [UniProtKB/Swiss-Prot:P0CC48] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_09g0004770 | OsLiXu_09g0004770.01 | Chr09 | 8767758 | 8769006 | + | NAM | ||
| CDS seq | atggctataacagagtttctgttattcgtattaacagctactctaggggaaattatatgttcctacctattgtctggatataccaagagagatctacggtctaatgaggctactatgaaattttactcatgggtggggcaagctcttctattctggttcatgatcgagcttcaagaaattgtgaacggtcttatcaatactcaaatgtataactccccaggaatttcaattgcgcttatatccatcactgtaggacttgggttcaagctttccccagccccttttcatcaatggactcctgacgtctacgaaggaatgtggttcgttcaaaaaattcctacctctatatctatctctgagcttcagccacgcgaattctcgatattcctttttatttctcatcaaacgaatggcatcttcttctggaaatcctag
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| Protein seq | MAITEFLLFVLTATLGEIICSYLLSGYTKRDLRSNEATMKFYSWVGQALLFWFMIELQEIVNGLINTQMYNSPGISIALISITVGLGFKLSPAPFHQWTPDVYEGMWFVQKIPTSISISELQPREFSIFLFISHQTNGIFFWKS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0004900 | RBH | 181.892700 | 0.000000 | 90.216385 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0139600 | SBH | 89.1483765 | 18.4683175 | 8.212076 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0005040 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0127600 | SBH | 111.4736975 | 11.3733915 | 6.418109 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0005030 | RBH | 6.402458 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0004900 | RBH | 6.174168 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0004900 | RBH | 155.795624 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0019010 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0004810 | RBH | 4.161678 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G005110 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
