Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_09g0000540 | OGI:09002200 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr09:804767-810011 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | catgattgaacactccctttcatccctcataaccccttttgacaacatagaaagaggggcagagacagacagaccccttttgatactactttagtcagacagagccccagagagagagaggggggggggggatctactactactccactccactcactcactctagagtgagtagagcctagctatctatccaaccatcttctcttccttccctctttacaagaagagagtttttggtgaactaccatcctactatccctaaccaatccaaaaccctcattcccttcttatgccctcaaatctccatgcatgccattggcatctccattccatgtcgtcgtccatggcgatctcgttgctgctgctcctcctcctccttggcgccggccacatgacccagccgacggcggcggcgctcaaccaggacggcgtgctgctcctctccttcaagttctcgctcttggctgacccgctcgcctccctcgccggctggggctactccgacgacacgccctgcgcctggaacggcgtcgtctgcatggccttcccgtcgtcgtcggcgtcggaggcggcgagggtggtgagcgtcgtcctgcccaacgcgcagctggtcggccccattgccagggagctcggcctcatcgagcacctccgccacctcgacctctccggcaacgcgctcaacggcaccgtccccgtcgagctgctgcgtgcgccggagctccgcgtgctctcgctcgccggcaacggcatcaacggcgccctgcccgaccaggtcggccagctccgcagcctccgcgcgctcaacctcgccgggaacgccctctccggccccatcccggcgaacctcaccctgctccccaacctcaccgccgtctccttggccaacaacttcttctccggcgcgctccccgtcgggggcttcccggcgctgcaggtgctcgacgtcagctccaacctcctcaacggcacgctcccgccggacttcggcggcgccgcgctgcgctacgtcaacctctcctccaaccgcctcgccggcgccatcccgccggagatggcgtcgcgcctgccgcccaacgtcaccatcgacctctcctacaacaacctcaccggcgccattcccacgctggcgcccttcaccgtgcagaggcccacggcgttcgcgggcaacgccgagctgtgcgggaggccgctcgacagcctctgcgcctccgccgcggatccacccatcaatggcacggcacgctcgccgccggccatcgcggcgatacccaagaaccccaccgaggcgctgcccggcgatgacaccggagcgccggcgtcaggatcaggccagcagggcaggatgaggatggccaccatcatcgccatcgccgccggcgacgtggccggcatcgccgtcctggtggtggtgttcatgtacgtgtaccaggtgaggaagaagaggcagcgggaggaggcggcgaagcagaggatgggcgtcgtgttcaagaagccggagcccgacgagtcgccggacggcatcggccggagcctgtcgtgctgcctgcggaagaaggccggagacgagagcgacagcacggaggaggtgactgacacgtcggcgtccaaggagggcgtcgtcgccgccaaggccaagacggacgacaagaagggcaaggacggcggcggcggcgcggtgctggtgacggtggacggcgaggtggagctggagatggagacgctgctgaaggcgtcggcgtacatcctgggcgcggcgggcagcagcatcgtgtacaaggcggtgctggccgacggcgccgtgctggcggtgcgcaggatcggcagcgacgacgccggcgtgaggcggttcagcgagttcgacgcccacatgcgcgccatcgccaggctccgccacgccaacatcctccgcctccgcggcttctactggggacccgacgagatgctcctcatccacgacttcgccgccaatggcagcctcgccaacatctccgtcaagagtaagcccaaagcatcgccatcgccgccgccgccgcgtcgcgcgttgctaactcgcgtttgtgcacttcagggaagacggggtcgtcgccgatcagcctgagttggagctcgcggctgcgcatcgcgcgcggcgtggcgagagggctggccttcctccacgacaagaagttcgtgcacggcaacgttcgccccagcaacatcctgctcgacgccgacatggagccgctattggcggacctcgggatccaccggctcatccgcagcggggacacgctcaagccggcggctgcggcgggggcggggcggttcgggagcaagcggtcggcgaagagcttgccggacctgtcgccgccgccgggcgcgagcccgctggcggggccgtccgggtccggcgacacagcggtggcgcagtaccaggcgccggagggcgtgaagaaccccaaggcgaacgccaagtgggacgtctactccttgggcatggtgctcctcgagctggtcgccgggcgcgcgctgacgagcctggagctctgccagtggagctccgcggaggagagcgggcagcaggtgttccggctggccgacgcggcgctgcgcggggagatggccgggagggaggaggcgctggcgagctgcctccggctggggttcgcgtgctgcgccatggcgccgcacaagaggccgtccatgaaggaggtggtggcggcgatggacaggataccgtcgccgtcgtcgtcggctcagtgacgcacgcacgccgttcattcttcatctcttttttctcctccatgtcccaaacctgtaaacttgttgagttcttgatgctttgcaccatgcatgtagtagtttgctcgctgttggttttgccatggttttccagcccaatttctgaaaggaattggtgtgttttgttcataccatcatattatctttgcctgttaatatgagttgattattcatttgcatatggccatgatatgcatggagtactagctaagagcagagcaatttgggaccaacaacatcaaacctagaaagcatcaaagcattctgttgtcaacatcaaagctttgctgctttttttcactaatttctttctacctccaaaccttgaaattagcaatcaactggtgctaatcaatttctgatgtattattcaattgaactacatgaatactttgctgcttaaccttttttttctttctcttcttgtagcaatatacaccttttttttctttctcttcttgtagcaatatacatttcaggattaataaaaagaacaaacatagtaactaggtagagagagcaagcacaagcatatgcacatgcaattgcagtgcagcatcacccgtgaccatctcttgatgcaaatgcagacaagggatcccagaaatattctgtttgtgtgagaaaactccaaatggtgttgggacttgggagatgggcaccaaccacgcacataggaacaaaatgtgcccactccctagctgcaccttgtacgtactcatgtgtcatttgtttctttatttgcatacagtttatactaatatatgcttcctcttgctggctgtgtaacgtttaccttcacgtaccattacacattatgaaaatgatgaaaagattactttggagatcttggtaaaagtgaaaccacctgccctatttcatgctcacaatacaaataaaactacgctaaatatgttaaaagaaactacacctctaatgccccccaaaaaacatcacacactacagatagcttcacaaactgcacttttatttacttgcaagctgttttatgaaactatacttttagggaaaaatataattaacatattacttatgttaaacaatgtgctaccaacggtatagtcttgccaaactattacttgcaaatgcagttgtttgatattttttttcaaacaaagccaaggattatgcatcaagtcttgtgaaactactactttttattctaattataaagtgtagttttgttaagtttattggataataataatacaaaagaacataaatacataacatgaaaagaacgtcattacagccctcattgaggatgatcttataagattaaacactttctacctgttatgcaaaacaatggtcaaaaatcaaaacatacgtaagtctatggatatccaaaaacacaggcattttggtagtttttttttctcaaacacagaccatctactgtttggataagctagatacaatccagctatgctgtgtttattccaatgttctaaaactacagtaataatattgacgacaaaaatgcttggtttaatttttatgcttaccactaagatcgaattgccatttgtcaagtgggaaagcacaagcatgcacagagcagggcatttgctaaatggaaaagggagaagattcggcaaatagaacctcttttgtcagcgtgtattactttcatacagcagaattggagggtttttcttctatggggtcaacagatagtggattaggccaactgacctgttgaaatcttagcacttgtctccatttcagaagttgtattccaagttccaaatctaaattgtttcaaacaattgtgaccagttgacagtgacactggtcaataaatacaacgtggtggcacatttaaatgatcttaatgaacatcaagaaagaggccaatcatcactagggatttcacagctatcattagacagaggattcatatttgaagaaaaaaaatcgatctacactacaagtgtaatcacgatgtcaagaaacaccagaaaatattttgcatttcagttagtcccataaggaaggaagggaagttcatttcttctaaaaataacactactgtaatgtgtagcactaacaagcatgcctaaagataaatactttgctgctccatcagaatgctagggcacgtcaggaggaggcgagaacaagagtaacaaaaatggcggcatggccatcgaatagagccaggcgctttcgagtaaatgctcatagtaatattaggtttccacccctttagttagtctcttagtgtataattgctgttagtgctaaactgctaattttgtaactttttatcagcatcaagttgaatctgtaattaatactacagtgttccagaacaatgaagccaaatttgattccccatttcaaaactaaacttacctgtttaccagattgactggctcctttattcttgctgtagccaagggcaatacctgacccaatgagtgccaaggtttaa
More
|
||||||||||
| CDS seq | atgccctcaaatctccatgcatgccattggcatctccattccatgtcgtcgtccatggcgatctcgttgctgctgctcctcctcctccttggcgccggccacatgacccagccgacggcggcggcgctcaaccaggacggcgtgctgctcctctccttcaagttctcgctcttggctgacccgctcgcctccctcgccggctggggctactccgacgacacgccctgcgcctggaacggcgtcgtctgcatggccttcccgtcgtcgtcggcgtcggaggcggcgagggtggtgagcgtcgtcctgcccaacgcgcagctggtcggccccattgccagggagctcggcctcatcgagcacctccgccacctcgacctctccggcaacgcgctcaacggcaccgtccccgtcgagctgctgcgtgcgccggagctccgcgtgctctcgctcgccggcaacggcatcaacggcgccctgcccgaccaggtcggccagctccgcagcctccgcgcgctcaacctcgccgggaacgccctctccggccccatcccggcgaacctcaccctgctccccaacctcaccgccgtctccttggccaacaacttcttctccggcgcgctccccgtcgggggcttcccggcgctgcaggtgctcgacgtcagctccaacctcctcaacggcacgctcccgccggacttcggcggcgccgcgctgcgctacgtcaacctctcctccaaccgcctcgccggcgccatcccgccggagatggcgtcgcgcctgccgcccaacgtcaccatcgacctctcctacaacaacctcaccggcgccattcccacgctggcgcccttcaccgtgcagaggcccacggcgttcgcgggcaacgccgagctgtgcgggaggccgctcgacagcctctgcgcctccgccgcggatccacccatcaatggcacggcacgctcgccgccggccatcgcggcgatacccaagaaccccaccgaggcgctgcccggcgatgacaccggagcgccggcgtcaggatcaggccagcagggcaggatgaggatggccaccatcatcgccatcgccgccggcgacgtggccggcatcgccgtcctggtggtggtgttcatgtacgtgtaccagctggtcgccgggcgcgcgctgacgagcctggagctctgccagtggagctccgcggaggagagcgggcagcaggtgttccggctggccgacgcggcgctgcgcggggagatggccgggagggaggaggcgctggcgagctgcctccggctggggttcgcgtgctgcgccatggcgccgcacaagaggccgtccatgaaggagccaagggcaatacctgacccaatgagtgccaaggtttaa
More
|
||||||||||
| Protein seq | MPSNLHACHWHLHSMSSSMAISLLLLLLLLGAGHMTQPTAAALNQDGVLLLSFKFSLLADPLASLAGWGYSDDTPCAWNGVVCMAFPSSSASEAARVVSVVLPNAQLVGPIARELGLIEHLRHLDLSGNALNGTVPVELLRAPELRVLSLAGNGINGALPDQVGQLRSLRALNLAGNALSGPIPANLTLLPNLTAVSLANNFFSGALPVGGFPALQVLDVSSNLLNGTLPPDFGGAALRYVNLSSNRLAGAIPPEMASRLPPNVTIDLSYNNLTGAIPTLAPFTVQRPTAFAGNAELCGRPLDSLCASAADPPINGTARSPPAIAAIPKNPTEALPGDDTGAPASGSGQQGRMRMATIIAIAAGDVAGIAVLVVVFMYVYQLVAGRALTSLELCQWSSAEESGQQVFRLADAALRGEMAGREEALASCLRLGFACCAMAPHKRPSMKEPRAIPDPMSAKV |
||||||||||
| Function | Receptor protein kinase-like protein At4g34220 [UniProtKB/Swiss-Prot:Q94C77] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_09g0000540 | OsLiXu_09g0000540.01 | Chr09 | 804767 | 810011 | + | NAM | ||
| CDS seq | atgccctcaaatctccatgcatgccattggcatctccattccatgtcgtcgtccatggcgatctcgttgctgctgctcctcctcctccttggcgccggccacatgacccagccgacggcggcggcgctcaaccaggacggcgtgctgctcctctccttcaagttctcgctcttggctgacccgctcgcctccctcgccggctggggctactccgacgacacgccctgcgcctggaacggcgtcgtctgcatggccttcccgtcgtcgtcggcgtcggaggcggcgagggtggtgagcgtcgtcctgcccaacgcgcagctggtcggccccattgccagggagctcggcctcatcgagcacctccgccacctcgacctctccggcaacgcgctcaacggcaccgtccccgtcgagctgctgcgtgcgccggagctccgcgtgctctcgctcgccggcaacggcatcaacggcgccctgcccgaccaggtcggccagctccgcagcctccgcgcgctcaacctcgccgggaacgccctctccggccccatcccggcgaacctcaccctgctccccaacctcaccgccgtctccttggccaacaacttcttctccggcgcgctccccgtcgggggcttcccggcgctgcaggtgctcgacgtcagctccaacctcctcaacggcacgctcccgccggacttcggcggcgccgcgctgcgctacgtcaacctctcctccaaccgcctcgccggcgccatcccgccggagatggcgtcgcgcctgccgcccaacgtcaccatcgacctctcctacaacaacctcaccggcgccattcccacgctggcgcccttcaccgtgcagaggcccacggcgttcgcgggcaacgccgagctgtgcgggaggccgctcgacagcctctgcgcctccgccgcggatccacccatcaatggcacggcacgctcgccgccggccatcgcggcgatacccaagaaccccaccgaggcgctgcccggcgatgacaccggagcgccggcgtcaggatcaggccagcagggcaggatgaggatggccaccatcatcgccatcgccgccggcgacgtggccggcatcgccgtcctggtggtggtgttcatgtacgtgtaccagctggtcgccgggcgcgcgctgacgagcctggagctctgccagtggagctccgcggaggagagcgggcagcaggtgttccggctggccgacgcggcgctgcgcggggagatggccgggagggaggaggcgctggcgagctgcctccggctggggttcgcgtgctgcgccatggcgccgcacaagaggccgtccatgaaggagccaagggcaatacctgacccaatgagtgccaaggtttaa
More
|
|||||||
| Protein seq | MPSNLHACHWHLHSMSSSMAISLLLLLLLLGAGHMTQPTAAALNQDGVLLLSFKFSLLADPLASLAGWGYSDDTPCAWNGVVCMAFPSSSASEAARVVSVVLPNAQLVGPIARELGLIEHLRHLDLSGNALNGTVPVELLRAPELRVLSLAGNGINGALPDQVGQLRSLRALNLAGNALSGPIPANLTLLPNLTAVSLANNFFSGALPVGGFPALQVLDVSSNLLNGTLPPDFGGAALRYVNLSSNRLAGAIPPEMASRLPPNVTIDLSYNNLTGAIPTLAPFTVQRPTAFAGNAELCGRPLDSLCASAADPPINGTARSPPAIAAIPKNPTEALPGDDTGAPASGSGQQGRMRMATIIAIAAGDVAGIAVLVVVFMYVYQLVAGRALTSLELCQWSSAEESGQQVFRLADAALRGEMAGREEALASCLRLGFACCAMAPHKRPSMKEPRAIPDPMSAKV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.067077 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0110100 | RBH | 0.090164 | 0.0 | 0.670830 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g02250 | RBH | 0.049700 | 0.0 | 0.140755 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0110100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0000480 | RBH | 0.0 | 0.0 | 1.622160 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0000460 | RBH | 0.0 | 1.379362 | 0.927140 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0000470 | RBH | 0.0 | 3.502071 | 1.203128 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0000460 | RBH | 0.0 | 0.189409 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0000590 | RBH | 0.0 | 36.465702 | 6.754372 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0010000 | RBH | 1.604152 | 3.213488 | 7.223747 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0000580 | RBH | 0.0 | 0.000000 | 0.254798 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0020700 | RBH | 1.8180325 | 1.426641 | 9.798566 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0000550 | RBH | 0.0 | 0.219252 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0000540 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0000600 | RBH | 0.0 | 12.053187 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0000550 | RBH | 0.0 | 3.325391 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G000600 | RBH | 0.0 | 4.042361 | 1.018456 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0000570 | RBH | 0.0 | 1.494541 | 1.368686 |
