Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0022560 | OGI:08074260 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:28206172-28209710 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaaatctcattgtttttgacattttctccatcgagaatgatatgcatgtgaggaagtttatttttcatgtaattcacaacatgagcttgagttggctgcagcttggagaggttatcggtggatgatttcccttggagagtgatataaatagctattgatttggatgcagtaatcttggaaactgcttgcaggtagttggtgtggatgagttgcgcctcatggttcctgaagaagagtaatgcgtttgatgatgtatagataggcatatacaatgtacatagcactgaaatgcatgaagcatgttaaatataaaatataagcttgaaaactatgtaattaggaagctatagctgaacctggatagtgagagctaacctatttttttctggttgttggtccatctgtgttggcaatggacgttgtgtttgcagaagaaattttgtgaaggaaggactgtggtatgagaaattgagcagtgcacatgttgttgtggtgttgtgggtgattcttatagtatttcggtggtgataataaggatactaattttgttttctcatttattgcagaatcagatatgattaagaatcatatcttgagtcttttattattgaggataaaatatggaatagatataaatgccatatttcagatttggttggttttgccagtaaacttgcaagtaatggttgcaaagataagttagcaatgatggtgatagatttggtgcaggtttaaatttcttaaggaaatcgttagcagtgatggtgacagatttggtgcaggtctaatttttttaagaaaatctatatatgttgctgataaaaggccatgttgtaggagaattgtgaaggatttgaagagttgtacctgttccttgtgacccgatggctgttgatcagctatctttggctgctgcagctggttttcctctccattggtggaggtttccgttctgaatttagcagtcaaattagtagcaaaacatacatacatacatatatatatgcacgcgcgcgacacacacatatatatgtttataggctgaaacttaaggtgtgcacgtacacttttttatggcgcttagaattttgtcctggagaaaattctgttgacggttgtttttccttgctgagatctacttgttggggatgataaagttgatttgttgcaacctgaatagtgtttgcaattgctgggctgatgcatatatgaaaggaatttagttgaagaatagtttgtatattctggaaaaagaacttgtatcagtgcagtaccttggttgatcaatgtgtaactccttttcaaattgaagagctctctttgctgaaggtataatttggtttactgtattgttgtctagagttgtttctggaggttgtagggacggtggcgtagtgggatgttggtcttctttgctgctattagttgtagtcataaatatagaaatgttaagcagaatataataagtaaaaaaggcatatgttggttaacctgcaatgttccatggtggttagcccttcatctgttgcaagttgtttggtggctgattcctgaaaaaagttatttttagattatagatggttggtagaagatatggtaaggacaaacatttgtatacctttgctacctttgtattttccagagtaggtagtatcaaacttgtattttcattttcaacgggataactcttcttgaggacataattgatagtgaagtgtgaagagtactttgtattcatggcaatgtgaaacaatcttgttttcccaatggctatatcaagagctatggcatgttttgttgcatcaattttcaagttctgggtagcttgagtagcatttacctcaaccaaatcctcagccacattgtagaatgctactgcgtccaaagttcctgattcatttcctgattcatctttaattgttaaaggaagtttgtacctgaaagtttgtttgagtatattagatttgtttatagaaatgtgagacgaattaattaataagaaaaattagtattatagatatgtcacatacattggttttggcatggaatgctgacattgacatcttggagtgtcggagttgctattgtatgatgcagtacatgatttgcatattttgtagtaccaatttgtatatggtactatcgctgatacctttgcaatgcaactgtatgaattccctccctagtgtgtaagaaatattgaaatgattatttaattagattagcaacttatttagtgatgtagtgtgaatgaggtacctcgaaagcagaaatgggcagtcttgatatttcttcaagtttgtatagcttacctgctgcttgaagtggagttaaatgttcaactcgtggcatttgttgttggagagttggaatatcccattggtagcttgaaggaagattgatgcatttttgaagcaaatataaattaaaatcagtatgacaataagctatataagttacctgctttgatattctgcaatctctgttatatcggagtcaaaatatatttgtgttgctgaacttgatgtagcctctgttttgccttttaaaattgtagcacataagtgagtagtgttgtttatgagagggggtattaaaaagttacttgagggactgacctaaataagtccctgctgtaagtccagcaagtatagctactactattttgtggtctgtagatttctgtagaacaaaagcttcatcaaatgaccctccatattcaccccagaggactatttcttgttcttgttcactacaaattggtgaaacaaaaggtataaactactgtgtcatatacatttggaacataaaaatataatgcatatgtgatacatactctttgctacggattttgagctttctgtttttcttggatgatgttttgccagcataatcatatggcccaacatggctgataactcctatcagatctagaggcaaaatgttcgagattagttgtataataattaaataaaagaagatagaaaatgcaagtattacctatcaatggttttgatattccgcttttagatggtatctgatcaaatgggcagaattcaaaaccatagtttgggatggatgaacctcttgattctaggtgataaacctttgtgctggacttaaattgcaacatgtatttttggtggtggtaaatatattttttgttttcaatgtcaacagtattgacatcaacaaacatgtagacacaacctagagttagtgatggacgaaattcattttcaagtttctttggaacagtaaactgcaccatagtgccctgcaagattagaactggtataagtctaaaactgcatcgttttatcagtaatatttagattggaagttaagcataggataaatcattttttggtgtaggatagtatacctcttcatcaagaattaccccatcgatgctgaatattgttggtgtactggctgaggccatgtttttagcatcccatagtctaataagtcgtccgaaaactttgaggttttgctgtcccaaatttatctgtttgagttttgttgctgatcccat
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| CDS seq | atgggatcagcaacaaaactcaaacagataaatttgggacagcaaaacctcaaagttttcggacgacttattagactatgggatgctaaaaacatggcctcagccagtacaccaacaatattcagcatcgatggggtaattcttgatgaagagggcactatggtgcagtttactgttccaaagaaacttgaaaatgaatttcgtccatcactaactctaggttgtgtctacatgtttgttgatgtcaatactgttgacattgaaaacaaaaaatatatttaccaccaccaaaaatacatgttgcaatttaagtccagcacaaaggtttatcacctagaatcaagaggttcatccatcccaaactatggttttgaattctgcccatttgatcagataccatctaaaagcggaatatcaaaaccattgatagatctgataggagttatcagccatgttgggccatatgattatgctggcaaaacatcatccaagaaaaacagaaagctcaaaatccgtagcaaagatgaacaagaacaagaaatagtcctctggggtgaatatggagggtcatttgatgaagcttttgttctacagaaatctacagaccacaaaatagtagtagctatacttgctggacttacagcagggacttatttaggcaaaacagaggctacatcaagttcagcaacacaaatatattttgactccgatataacagagattgcagaatatcaaagcaggtacaaacttcctttaacaattaaagatgaatcaggaaatgaatcaggaactttggacgcagtagcattctacaatgtggctgaggatttggttgaggtaaatgctactcaagctacccagaacttgaaaattgatgcaacaaaacatgccatagctcttgatatagccattgggaaaacaagattgtttcacattgccatgaatacaaagtactcttcacacttcactatcaattatgtcctcaagaagagttatcccgttgaaaatgaaaatacaagtttgatactacctactctggaaaatacaaaggtagcaaaggaatcagccaccaaacaacttgcaacagatgaagggctaaccaccatggaacattgcagcaaagaagaccaacatcccactacgccaccgtccctacaacctccagaaacaactctagacaacaatacagtaaaccaaattataccttcagcaaagagagctcttcaatttgaaaaggagttacacattgatcaaccaagcccagcaattgcaaacactattcaggttgcaacaaatcaactttatcatccccaacaagtagatctcagcaaggaaaaacaaccgaaccatgaggcgcaactcatccacaccaactacctgcaagcagtttccaagattactgcatccaaatcaatagctatttatatcactctccaagggaaatcatccaccgataacctctccaagctgcagccaactcaagctcatgttgtgaattacatgaaaaataaacttcctcacatgcatatcattctcgatggagaaaatgtcaaaaacaatgagatttag
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| Protein seq | MGSATKLKQINLGQQNLKVFGRLIRLWDAKNMASASTPTIFSIDGVILDEEGTMVQFTVPKKLENEFRPSLTLGCVYMFVDVNTVDIENKKYIYHHQKYMLQFKSSTKVYHLESRGSSIPNYGFEFCPFDQIPSKSGISKPLIDLIGVISHVGPYDYAGKTSSKKNRKLKIRSKDEQEQEIVLWGEYGGSFDEAFVLQKSTDHKIVVAILAGLTAGTYLGKTEATSSSATQIYFDSDITEIAEYQSRYKLPLTIKDESGNESGTLDAVAFYNVAEDLVEVNATQATQNLKIDATKHAIALDIAIGKTRLFHIAMNTKYSSHFTINYVLKKSYPVENENTSLILPTLENTKVAKESATKQLATDEGLTTMEHCSKEDQHPTTPPSLQPPETTLDNNTVNQIIPSAKRALQFEKELHIDQPSPAIANTIQVATNQLYHPQQVDLSKEKQPNHEAQLIHTNYLQAVSKITASKSIAIYITLQGKSSTDNLSKLQPTQAHVVNYMKNKLPHMHIILDGENVKNNEI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0022560 | OsLiXu_08g0022560.01 | Chr08 | 28206172 | 28209710 | - | NAM | ||
| CDS seq | atgggatcagcaacaaaactcaaacagataaatttgggacagcaaaacctcaaagttttcggacgacttattagactatgggatgctaaaaacatggcctcagccagtacaccaacaatattcagcatcgatggggtaattcttgatgaagagggcactatggtgcagtttactgttccaaagaaacttgaaaatgaatttcgtccatcactaactctaggttgtgtctacatgtttgttgatgtcaatactgttgacattgaaaacaaaaaatatatttaccaccaccaaaaatacatgttgcaatttaagtccagcacaaaggtttatcacctagaatcaagaggttcatccatcccaaactatggttttgaattctgcccatttgatcagataccatctaaaagcggaatatcaaaaccattgatagatctgataggagttatcagccatgttgggccatatgattatgctggcaaaacatcatccaagaaaaacagaaagctcaaaatccgtagcaaagatgaacaagaacaagaaatagtcctctggggtgaatatggagggtcatttgatgaagcttttgttctacagaaatctacagaccacaaaatagtagtagctatacttgctggacttacagcagggacttatttaggcaaaacagaggctacatcaagttcagcaacacaaatatattttgactccgatataacagagattgcagaatatcaaagcaggtacaaacttcctttaacaattaaagatgaatcaggaaatgaatcaggaactttggacgcagtagcattctacaatgtggctgaggatttggttgaggtaaatgctactcaagctacccagaacttgaaaattgatgcaacaaaacatgccatagctcttgatatagccattgggaaaacaagattgtttcacattgccatgaatacaaagtactcttcacacttcactatcaattatgtcctcaagaagagttatcccgttgaaaatgaaaatacaagtttgatactacctactctggaaaatacaaaggtagcaaaggaatcagccaccaaacaacttgcaacagatgaagggctaaccaccatggaacattgcagcaaagaagaccaacatcccactacgccaccgtccctacaacctccagaaacaactctagacaacaatacagtaaaccaaattataccttcagcaaagagagctcttcaatttgaaaaggagttacacattgatcaaccaagcccagcaattgcaaacactattcaggttgcaacaaatcaactttatcatccccaacaagtagatctcagcaaggaaaaacaaccgaaccatgaggcgcaactcatccacaccaactacctgcaagcagtttccaagattactgcatccaaatcaatagctatttatatcactctccaagggaaatcatccaccgataacctctccaagctgcagccaactcaagctcatgttgtgaattacatgaaaaataaacttcctcacatgcatatcattctcgatggagaaaatgtcaaaaacaatgagatttag
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| Protein seq | MGSATKLKQINLGQQNLKVFGRLIRLWDAKNMASASTPTIFSIDGVILDEEGTMVQFTVPKKLENEFRPSLTLGCVYMFVDVNTVDIENKKYIYHHQKYMLQFKSSTKVYHLESRGSSIPNYGFEFCPFDQIPSKSGISKPLIDLIGVISHVGPYDYAGKTSSKKNRKLKIRSKDEQEQEIVLWGEYGGSFDEAFVLQKSTDHKIVVAILAGLTAGTYLGKTEATSSSATQIYFDSDITEIAEYQSRYKLPLTIKDESGNESGTLDAVAFYNVAEDLVEVNATQATQNLKIDATKHAIALDIAIGKTRLFHIAMNTKYSSHFTINYVLKKSYPVENENTSLILPTLENTKVAKESATKQLATDEGLTTMEHCSKEDQHPTTPPSLQPPETTLDNNTVNQIIPSAKRALQFEKELHIDQPSPAIANTIQVATNQLYHPQQVDLSKEKQPNHEAQLIHTNYLQAVSKITASKSIAIYITLQGKSSTDNLSKLQPTQAHVVNYMKNKLPHMHIILDGENVKNNEI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.342734 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0522100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g41070 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0522100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0022570 | RBH | 0.988286 | 17.927198 | 14.567027 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0022450 | RBH | 0.560360 | 3.691345 | 6.066183 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0022350 | RBH | 3.257127 | 5.224382 | 24.555346 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0022480 | RBH | 0.533530 | 0.209584 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0022360 | RBH | 0.000000 | 0.000000 | 2.132207 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0413800 | RBH | 0.0884245 | 0.1007435 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0022250 | RBH | 0.0 | 0.0 | 0.047897 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0435500 | RBH | 0.0409375 | 0.117331 | 0.006656 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0021610 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0021910 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0021760 | RBH | 5.710861 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022350 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0021930 | RBH | 0.075249 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G022090 | RBH | 0.000000 | 0.000000 | 0.214202 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0022250 | RBH | 0.0 | 0.0 | 0.0 |
