Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0021530 | OGI:08072290 | 9/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:27402683-27405592 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccgatgcatgtgctgacagctgtattgattaaaatctcgttgcatagtgttagcatttgccagtttggagtatgttgtattgtgggagaatgtgtgcatggtgtgatgtgatttaaattgttcttggtcttagtgcataaacttatatgatgatgaatttaggaaggacggagtacagtccaaacccaacctgcttgctctcacagccatggcgaccaccggcgattccgccgccgccccCggcgaggtccggcgcctcctcgctcacctcgactcccaccagcaactcctcgccgcttgccacgacgcctggtcgtgctcgctcgcccacttcgcctcgctcgacgaggacctcgcagcccgctccgcgtcgctcgacgataccctagcgccgccgtggacgcctccaccagcttcgagtccctcgcgtcactcgaggcctgcaaggccgccgtccccgtgcgcctcgccgaggtcgagacggcgctgtccgcggccgtcgcggaggccgagtccgcggagcccccgcccgccgacgtccgtgggGcctccggtggatgtgcggccgcatggacgctcccgtgctgtggcgcttcactgcggcccgccggcgggagctcgctgccgtccggaaggaggtcggccctgtcgttgctgcgaaggatggtgcaggtgaggaccagttctgggtgctcggcatactgttgcgcttgttatttgattccgatggctggaagccgccgaagataggagatacgttggttgagagggcggttggcaaacaggctagcgccaagactgtgcgagcttgtctccaccaaccagagtgcctttgttcgaaaaagggctatccacgataatttcgtcttcgtcaaaaacatggtacaatatttacatagaacgaagaaaacgagtctgtttatcaaaattgatatcgccaaagcgtttgacacggtttgttggccctaccttcttgaagttcttcgtcagtttggttttggaacccgttggctaaactggatttccaatttacttgcaacctcttcctcccaagtgcttctcaatggatctccagggcaatcaataaaccatgtccgaggccttagacaaggggatccgctctcgccgatgttgtttatcctagcaatggaaccttttcaccgaattcttaaggcggctgaaaatgcatcacttctctctccgatgggcgggagttttgacagattcaggtgctccctgtatgtagacgacgtggcagtttttgtgaagcctcaagcttcagacttatcggtgcttatgagactcctaactttctttgcgcaaacctctagccttcacacaaacatcaataagacagagatctacccgatcagatgtgagaacatcaacctcgtatctcttctcgcaaatttccctggtatggtaaagcagttcccttgccgctacctcggtctgcctctccatatccgaaagctaaggaaaattgacttcctgccgttaatcgaaaaaattggctcgcgaattcccggctggaaagggaggttctttacttcagccgggaggaaaacactggtccaatcggtcctaagctctatgccaattcatcacttcaccgcattgcaagtgcccaaatgggtgataaaaagaattgatcgctttaggagatcttttctttggaaaggagaagaccctgacaaaaccaatccaggcagcagtttagttaactggcagacggtgtgtaagccaaaaattttgggtggattgggcattctggatttagagaggttttcgcgagcccttcgtcttcgttggctttggcttggttggaaggatgaaaacaaaccatgggctggcataaacgttccttgtgatgatacagataaaaggttgtttcaggcagcaacgacaattgagctagggaatggcgcaaaaacaagcttttggcatgacaattggctacaaaacaactgcccaaaagacattgcaccactgtgtttcaagttggcaaaaagaaagcaaaaaagcgtccagcaagagctccataacaataactggttgatctctttcaggcaaataacatcagtagaagaaatccacgaacttgttcagcttgggagtttgcttcagggagtcctgcttaccccgcgtcctgatgacatctcttggaattggaatgaatccaaagtttacacaagcaagagtgcttatcttttccaatatcaaggaacttttgtctctttagatttctcctcgctttggaaggcgccggctgagccaaaatttcaattttttggttggctagtcctccaccagaaaactctcacggctcaaaacttgttgagaagacattggccatgcaattggatttgtagtttatgcacaagcgcctttgaagacactaatcatctgtttagtgaatgccctttcttcaaggaagtttggtctctagttacttcctggcaacatttacctacaaacaatgttggcctttctgtcggaacctctgattggtgggcccaaatcgattgcgtgcgatcgaaggagcaaaagaaagcgatgagaggagctctgcttaccacttggtggaatgtttggttagaaagaaacaggagaatttttaacaacatttcaacctcagagagagttgtggcatatatagtaaaacaagatcttgatctccgtcgctcggcttttaggcctccatagtttcgtgtcgtgtattgttgcttctgttttctttctattttcgggactgaacttgttttgtactgtttttcctcctaattaaattccggcagatctcctgccgtcgttctcctaaaaaaaagagggcggttgctaccgctgctcaaatcaacaaacgacacaaaAtgaaaaaaaaatcacttgaagctcatccgcacctag
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| CDS seq | atggcgaccaccggcgattccgccgccgccccCggcgaggtccggcgcctcctcgctcacctcgactcccaccagcaactcctcgccgcttgccacgacgcctggtcgtgctcgctcgcccacttcgcctcgctcgacgaggacctcgcagcccgctccgcgtcgctcgacgataccctagcgccgccgtggacgcctccaccagcttcgagtccctcgcgtcactcgaggcctgcaaggccgccgtccccgtgcgcctcgccgaggtcgagacggcgctgtccgcggccgtcgcggaggccgagtccgcggagcccccgcccgccgacgtccgtgggGcctccggtggatgtgcggccgcatggacgctcccgtgctgtggcgcttcactgcggcccgccggcgggagctcgctgccgtccggaaggaggtcggccctgtcgttgctgcgaaggatggtgcagctcatccgca
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| Protein seq | MATTGDSAAAPGEVRRLLAHLDSHQQLLAACHDAWSCSLAHFASLDEDLAARSASLDDTLAPPWTPPPASSPSRHSRPARPPSPCASPRSRRRCPRPSRRPSPRSPRPPTSVGPPVDVRPHGRSRAVALHCGPPAGARCRPEGGRPCRCCEGWCSSSA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0021530 | OsLiXu_08g0021530.01 | Chr08 | 27402683 | 27405592 | + | NAM | ||
| CDS seq | atggcgaccaccggcgattccgccgccgccccCggcgaggtccggcgcctcctcgctcacctcgactcccaccagcaactcctcgccgcttgccacgacgcctggtcgtgctcgctcgcccacttcgcctcgctcgacgaggacctcgcagcccgctccgcgtcgctcgacgataccctagcgccgccgtggacgcctccaccagcttcgagtccctcgcgtcactcgaggcctgcaaggccgccgtccccgtgcgcctcgccgaggtcgagacggcgctgtccgcggccgtcgcggaggccgagtccgcggagcccccgcccgccgacgtccgtgggGcctccggtggatgtgcggccgcatggacgctcccgtgctgtggcgcttcactgcggcccgccggcgggagctcgctgccgtccggaaggaggtcggccctgtcgttgctgcgaaggatggtgcagctcatccgca
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| Protein seq | MATTGDSAAAPGEVRRLLAHLDSHQQLLAACHDAWSCSLAHFASLDEDLAARSASLDDTLAPPWTPPPASSPSRHSRPARPPSPCASPRSRRRCPRPSRRPSPRSPRPPTSVGPPVDVRPHGRSRAVALHCGPPAGARCRPEGGRPCRCCEGWCSSSA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g39670 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0021520 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0021420 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0021300 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0021490 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0400200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0021220 | SBH | 0.417651 | 0.088863 | 0.272667 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0420600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0020550 | SBH | 0.934991 | 0.072760 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0020690 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
