Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0021120 | OGI:08071040 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:27005352-27007349 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgccgccgcctcacctcctcccgctcctcctcggccgcctcgtcgtctccggcgacctccgccggagccccgcccacctccgccgcatcgtcccgctcctcccttcccacccccacctcgccgccgccctgtgcgccgtccatttcccgctcttcccctcctcctccgccaccttcctccacaacatcctcatccgcgcctccgcctcctccgcgtccccgcgcctctccttcgccgccttctcctccctcctccggtgcgggctcgtccctgacaggttcaccttgccgcccctcctcggttcggcgggtaagctcccggccttcccgcgcacgggcgcgcaggtgcacgcgcaggccgtccggcgcgggttcttggcggatgtcttcgtcgtcaacgcgctcctcgcgatgtacggcgcgctccgggacgcggcgtcgatgcgggaggtgttcgggtcgtgcgccggggtcgcggacgtggtgtcgtggaacacggtgatcggtggctacgtgaagtgcggggagatggagagtgccaagagggtgttcgacgaaatgccacggaggaatggggtgtcctggagcaccatggtggggggctatgccgcggccggggagctggatgtggcaagggagatgttcgatcggatgccagctattgggaggaatgtcgtgacatggaactccatggtgacaggattcgcgcgccacgggctgctgccgttagcgagaaagatgttcgatgagatgccagtcaggaatctggtgtcatggaatgcaatgctccggggttattcagtgaacagcgacatggatggcgcgagggagttgttcgatgtcatgccagagaaggatgtggtttcctggacatgcatgatttcagggtatgctcaggctggacgctatcaggatacccttgagctgtttcgcgcaatgcagactgagagcaatgtacagccgaatgaggtgaccatggtgagtgtgctttcagcatgcgcaaatttaacagcactggaagaaggaagatgggtccatgccttcatcgacaagcacaaaatggtgctcaacaacgagtacaatcttggtgctgctcttattgacatgtatgccaagtgcgggagaactgacattgctgtcaaaattttcaactccctggaccgaaagaacgtctcggcctggaacgcgctcatcaccaggttggcaatgaacggcaatgctcaggattccgtagacgcattcgaacagatgaagagaacgggtgaaaagccgaacgacataacgtttgtcggtgtgctcacagcttgttcccacggtgggctggtggatgaaggtcgacggtgcttccagagcatggcgtctacctgcggagtgcagccggaggtgaagcactatggttgcatggttgacatgttaggccgagcagggcttcttgaagaggcagaggagttgatccggagcatgccgatggcacccgatgtcatggttttcggcgctctactgggtgcctgtcgaatgcacaagagatttgatgtggctgaaagagttcagagtgagatccatagcctcaatctcaacgcccagcagtctggctgccatgttttgatttctgacatttatgctgctgctggtaaatggttcgatgttctggaggcgaggcaagttgtgcagaggtctggcatcaggaaatggacacgataggtttaagattcttgcagaagcctgatattgactttacgcttttgagcaatggaagtggtggcactggtgggtatattgcttaatgcttacaagttatcggaaatgtggttagaacatcacaactcataagccccagatagcaaaatactatgctcgttatgcttcagagctgattgaaattgccataacgccaaagatggattatgtcacagcatctgtctttacaggccaaaacttaaaattcatcagaatttattcagttggtcttgtttccttgaccatcaatttccttga
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| CDS seq | atggcgccgccgcctcacctcctcccgctcctcctcggccgcctcgtcgtctccggcgacctccgccggagccccgcccacctccgccgcatcgtcccgctcctcccttcccacccccacctcgccgccgccctgtgcgccgtccatttcccgctcttcccctcctcctccgccaccttcctccacaacatcctcatccgcgcctccgcctcctccgcgtccccgcgcctctccttcgccgccttctcctccctcctccggtgcgggctcgtccctgacaggttcaccttgccgcccctcctcggttcggcgggtaagctcccggccttcccgcgcacgggcgcgcaggtgcacgcgcaggccgtccggcgcgggttcttggcggatgtcttcgtcgtcaacgcgctcctcgcgatgtacggcgcgctccgggacgcggcgtcgatgcgggaggtgttcgggtcgtgcgccggggtcgcggacgtggtgtcgtggaacacggtgatcggtggctacgtgaagtgcggggagatggagagtgccaagagggtgttcgacgaaatgccacggaggaatggggtgtcctggagcaccatggtggggggctatgccgcggccggggagctggatgtggcaagggagatgttcgatcggatgccagctattgggaggaatgtcgtgacatggaactccatggtgacaggattcgcgcgccacgggctgctgccgttagcgagaaagatgttcgatgagatgccagtcaggaatctggtgtcatggaatgcaatgctccggggttattcagtgaacagcgacatggatggcgcgagggagttgttcgatgtcatgccagagaaggatgtggtttcctggacatgcatgatttcagggtatgctcaggctggacgctatcaggatacccttgagctgtttcgcgcaatgcagactgagagcaatgtacagccgaatgaggtgaccatggtgagtgtgctttcagcatgcgcaaatttaacagcactggaagaaggaagatgggtccatgccttcatcgacaagcacaaaatggtgctcaacaacgagtacaatcttggtgctgctcttattgacatgtatgccaagtgcgggagaactgacattgctgtcaaaattttcaactccctggaccgaaagaacgtctcggcctggaacgcgctcatcaccaggttggcaatgaacggcaatgctcaggattccgtagacgcattcgaacagatgaagagaacgggtgaaaagccgaacgacataacgtttgtcggtgtgctcacagcttgttcccacggtgggctggtggatgaaggtcgacggtgcttccagagcatggcgtctacctgcggagtgcagccggaggtgaagcactatggttgcatggttgacatgttaggccgagcagggcttcttgaagaggcagaggagttgatccggagcatgccgatggcacccgatgtcatggttttcggcgctctactgggtgcctgtcgaatgcacaagagatttgatgtggctgaaagagttcagagtgagatccatagcctcaatctcaacgcccagcagtctggctgccatgttttgatttctgacatttatgctgctgctggtaaatggttcgatgttctggaggcgaggcaagttgtgcagaggtctggcatcaggaaatggacacgatag
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| Protein seq | MAPPPHLLPLLLGRLVVSGDLRRSPAHLRRIVPLLPSHPHLAAALCAVHFPLFPSSSATFLHNILIRASASSASPRLSFAAFSSLLRCGLVPDRFTLPPLLGSAGKLPAFPRTGAQVHAQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRKWTR |
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| Function | Pentatricopeptide repeat-containing protein At2g29760, chloroplastic [UniProtKB/Swiss-Prot:O82380] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0021120 | OsLiXu_08g0021120.01 | Chr08 | 27005352 | 27007349 | + | NAM | ||
| CDS seq | atggcgccgccgcctcacctcctcccgctcctcctcggccgcctcgtcgtctccggcgacctccgccggagccccgcccacctccgccgcatcgtcccgctcctcccttcccacccccacctcgccgccgccctgtgcgccgtccatttcccgctcttcccctcctcctccgccaccttcctccacaacatcctcatccgcgcctccgcctcctccgcgtccccgcgcctctccttcgccgccttctcctccctcctccggtgcgggctcgtccctgacaggttcaccttgccgcccctcctcggttcggcgggtaagctcccggccttcccgcgcacgggcgcgcaggtgcacgcgcaggccgtccggcgcgggttcttggcggatgtcttcgtcgtcaacgcgctcctcgcgatgtacggcgcgctccgggacgcggcgtcgatgcgggaggtgttcgggtcgtgcgccggggtcgcggacgtggtgtcgtggaacacggtgatcggtggctacgtgaagtgcggggagatggagagtgccaagagggtgttcgacgaaatgccacggaggaatggggtgtcctggagcaccatggtggggggctatgccgcggccggggagctggatgtggcaagggagatgttcgatcggatgccagctattgggaggaatgtcgtgacatggaactccatggtgacaggattcgcgcgccacgggctgctgccgttagcgagaaagatgttcgatgagatgccagtcaggaatctggtgtcatggaatgcaatgctccggggttattcagtgaacagcgacatggatggcgcgagggagttgttcgatgtcatgccagagaaggatgtggtttcctggacatgcatgatttcagggtatgctcaggctggacgctatcaggatacccttgagctgtttcgcgcaatgcagactgagagcaatgtacagccgaatgaggtgaccatggtgagtgtgctttcagcatgcgcaaatttaacagcactggaagaaggaagatgggtccatgccttcatcgacaagcacaaaatggtgctcaacaacgagtacaatcttggtgctgctcttattgacatgtatgccaagtgcgggagaactgacattgctgtcaaaattttcaactccctggaccgaaagaacgtctcggcctggaacgcgctcatcaccaggttggcaatgaacggcaatgctcaggattccgtagacgcattcgaacagatgaagagaacgggtgaaaagccgaacgacataacgtttgtcggtgtgctcacagcttgttcccacggtgggctggtggatgaaggtcgacggtgcttccagagcatggcgtctacctgcggagtgcagccggaggtgaagcactatggttgcatggttgacatgttaggccgagcagggcttcttgaagaggcagaggagttgatccggagcatgccgatggcacccgatgtcatggttttcggcgctctactgggtgcctgtcgaatgcacaagagatttgatgtggctgaaagagttcagagtgagatccatagcctcaatctcaacgcccagcagtctggctgccatgttttgatttctgacatttatgctgctgctggtaaatggttcgatgttctggaggcgaggcaagttgtgcagaggtctggcatcaggaaatggacacgatag
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| Protein seq | MAPPPHLLPLLLGRLVVSGDLRRSPAHLRRIVPLLPSHPHLAAALCAVHFPLFPSSSATFLHNILIRASASSASPRLSFAAFSSLLRCGLVPDRFTLPPLLGSAGKLPAFPRTGAQVHAQAVRRGFLADVFVVNALLAMYGALRDAASMREVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRKWTR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0500600 | RBH | 0.136622 | 0.145213 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g39130 | RBH | 0.082634 | 0.163264 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0500600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0021050 | RBH | 0.095083 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0020950 | RBH | 0.0 | 1.076482 | 0.411891 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0020840 | RBH | 0.421567 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0021060 | RBH | 0.0 | 0.058850 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0020930 | RBH | 0.019086 | 0.0 | 0.565944 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0394400 | RBH | 0.4613035 | 0.959686 | 0.3362105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0020820 | RBH | 0.096804 | 0.079707 | 0.061653 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0414500 | RBH | 0.5146175 | 0.9312865 | 2.0884955 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0020140 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0020430 | RBH | 0.0 | 1.511279 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0020270 | RBH | 0.569720 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0013730 | SBH | 0.000000 | 0.0 | 2.630902 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0020470 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G020620 | RBH | 0.0 | 0.0 | 0.249344 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0020780 | RBH | 0.000000 | 1.978502 | 0.000000 |
