Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0020840 | OGI:02040470 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:26817097-26822384 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggggagggaagacgacgccggcgatcaccagcgaccggagccacaggcgaaggaagagaactcgtcgacgtcggcatctccttcccacgatccaaagatcacgcaggaggagaagagatgggaggatgaagatgatgagtacgaggaagaggaagaggaattgctgtatgatgtcgacgacggcgaggacgcaccggccgaagcctgcgttctcaccggcgtgaagcacagcgacggatccatctacaagccgaaacccccctactcgctcctcggcctctaccacctcgacgacgccagcgagacccgcttggagcccatgaggctgacggctcccaccgatcgctgccggccatgcttgctcgattgcacggtccactacggctgcgccatgattcagatcttctccgtcaggatagctgctctgtccgccaccgccgccaccgctccggttcagatctacggattcatggctgcccgggacctctacgaacccctgcgcaactatgtcttccgctgcagccgggacgaccccttcgtcttgccggggcactactccgatcccgattcgctcataagtttgtcgggtcccaagcgaggcgtctcgctgcagaaccccgccatgatcgagtacgacctcaagatcaagagaggggaggaggaacaagacgacctgcagctcatcgacggggtggccgtcttcagcgacctcacaccgttccacggggtgtacacccagcggatccatggcgtccatggcgccgtggacatcagcttggcgctcctccgcgaagggatggaatgcaccattgaaatcagggtccccgaggtagctaatggcggcatacacttgttagtctcttgcttcgtcagcaaaataccccagaaaatcaagctcttcgatggcaccattacagagccatggaagctcagaaattatgtagggtgcgtttggatctaaggctaggaggggcctagcctagcctggcaaggccagtcgtttggaatcagaaaaaaatcctagtccatgggggcgagctagcccataggagcgagaaaaggctggctcacaagggagagccgaatcggctcgcctccgacggcaagctcctcgcgcgaaaaaaatcgttgataaggataaagcgatttttcccaaaagttgttgctttcttcaacaaccagtcccccaatttcgtcctcctcctccactcttcgctaaagaatcgggcttgcagatctcgtcgctctcttcccccactcttggctgaactataggactcacagatctggtcaatttgcaatcatcctcctcccCttgccgaactgtcaggtaatctcgtgcccatataaaaatgttgtagagcctccagtctccacgcagtaaatcggagagcaaggccaactcgatttgaggagagcttgttcttgcagaagtttgctgctggacacatgattgctcgtggtgagagctgagaagctcctagatttgatttcttccgccggcggcgcctcgtctgtctagagaaggtcccaaatttgatttcttccgccgacggcacctcgtctgtctagatttgcaggtacgagaacctttttcttttattatatctctccatcttcctgccatggatggatgtatgcgagttgtatatgttgcttcatgtactatttccacatccagtaatcttattttgggcctttggtgctggattctgattttgcattaatggggattgtcgatggtatgtgcagtagtagctaggaactttctgaccgtcggcaccaatcaagagtagaagtatgcattatacattgatgtttggtatttgctctttagaccgtcatttgtccattaattttttcccttgtgttcatattattTgacactgccgtatagccgtacttctatatagtgtttgattaattggtacgaaaaacaggattcagaacaaacatgagttgcaatacaggaataaaggtgcttttatcgatcagcacctaataagtatttattatgttgatacatagttttattttgttatgctcgttcctttttttctggcgcatttactttatgcatattactctgcatgtatccaatcagtattcatttttttttatatttttatttatagatggatggcagtgcactaattaatagaagaattgcattcttcagtgcattcttagtggcatactggacatggatcatatataagcgcaagaatagtgaccctattagatactcgttgttagagaaaaatagagagaggatagtctatttacaaaaactctattgtggtgaggagagacattgtatctgtgaactacgtatgggtaaaaccgtgttctttaaactatgtcataagctgcgtagtatgggagcattgagagatacttggcactgtactgtagaggaacagattgccatgtttctcactacggtaggacatcacaaaaaaaatggtgatattggcttccacttcacaaggtctggtgaaactgtgagttggtacttcaataaagtattatatgcaatcgggcatcttggaacagaaatgcttaggcatcgcacgcatgatacgccatcaaagattttgggcaaccaaaggtttgatccttattttaaggtataactttattcacatttcatctaaaattaaaaacatgttggagttttgcatgtacttacttggttggtaattgaatggttaggactgcattggtgccattgatgggacccatgttccatgcaatgttccatctcgaatatcggatagattccggggtagaaagccatttcctacacaaaatgttcttgctgttgttgactttgatttgatgtttacatatattagtgctggttgggagggttcagcacatgattcaacagtactgagacactctcttgagcatcctaatggcctacgagtccctgaaggttgctgcacttctaataactttatatctcaaatataacttatgcatacacctagtagaattgatcatgctaatgatattataacagggaagtactatcttgcggatgctgggtatgctgctaggagaggattcctaccaccgtttcgccaaacccgataccatttgcgtgaatggaaaagcaataaacccaagacaacaaatgaactattcaacttaagacactcttctctccgtactactgttgagagagcgtttggaactctaaaaaaccgattcaaagttcttacaactaggccatattatcctttttgattccaagtaagggttgtcatagcatgttgcattcttcacaattggatcttgcaaaatggtggtcctgataagctagtctattctgagcgaagatggtttgaaaattacccaagatcaccagggcgagttcagcgtgatttgcgtgaagagcaaagagaggtgctgcgagatagagacaatatggcaagaaggatgtggagaaatagacataatgttaggcatggatgatttgtgctgtgaaattctgttcctgcatatatgtttttatcttactttaggaacaaactagtccatacaaagaacaatgtatgcttgaattgtattgcactgtaatgctgtgtatgcttcctatatttacatgatttaagtggcggaacaactgaaccatgtcattcttgacttgttatcataatgttttatactttttgcagcaatatggcagggaacaatgtggtttggcagccccaggttgttgaggaaatgttgcgatactacaaggagaagatactggctgatggaagacaacttgtatttaaagaagtccatcatgaggaatgtgcaaagcaaattaatggcaagtatcacacaaacttcacaagtcgacaagtttatcacaagtttcacaagttgaaggctcagtggaaggtgattatggaggcaaagaatttgagcggggccaattttgatgacgttgagaaaaaaatcctatatgatgagactgaagttgttcgaatgactaatgtgagtgttctaactattctttcctagcaaataactatcgtgtttacactatatggatgtctatgtttcttaccattttattgtcatgtgtaggccaaagataaaagggctaaattcattaacgtccccatacgttggtatgatgaaatggagtttatttttcaagacaagcatgcaacaggggaatttaatgttatgcaaacaccatatgaccgtccaatggaagatgatgattttattggtgataaaaatggcagtcctggtgatgttgacccttcatcaaattatggctcagattgtcttccagatcaagagaacaatactggaagtagctcatcttctaggcgtgcaaaaggtagaaaaactgataaaggtaaaagagttagagctgatgataatgtggtttatgagataacaggggctatggataatatgtctgaaaccatgcgtttcacacatatgacacatccaaatgaatccctattcaagataattgatgagatgacggaataccctgtcatggttcgacttgagctacagacttacctcgcgacccatgagaatatagctgccatgttgaagagtagaccactggattctattaagaaatatgtggcacaatggataatacaaaactatccagctgctatgtaatttctttgctgagatgtttgaataattactatgcattcaagctaaatagtttaagaatgaaacgtgcagtttagatattatttgaataattgatatgctttggttcgaacttgtaataaagtagttcaaaaagatatttgattgtttcaaggaattcttttagcatatagctttgccctttttactacttctatctgtactattcttgtggccaagttaactgtgaaagaatctgtagtgttcttgtgacaaagccatcaattaaaaaaatttgatctgtgtgcaatattattttgctcaatatgaaaagaagcggcacaaaatactctaaagagcaagataattcgttgaaggaaccaaatggctagccactaattcttgccatagaaagcaaaccaaccaaacaaagggtatatggcaagcctggcaagctggcaacgagttggcttgcccttacccagctaggctagctggacaatagaaccaaacagacctgtagttgctgtgcagagagacaccaccttgattgtggatttcaaggttgcgccggtcgtggccgatggtggcggcggctcctccgatcgtgtccatcgcttctacgccttcaatgcagaagcacatgattatgctttctag
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| CDS seq | atggggagggaagacgacgccggcgatcaccagcgaccggagccacaggcgaaggaagagaactcgtcgacgtcggcatctccttcccacgatccaaagatcacgcaggaggagaagagatgggaggatgaagatgatgagtacgaggaagaggaagaggaattgctgtatgatgtcgacgacggcgaggacgcaccggccgaagcctgcgttctcaccggcgtgaagcacagcgacggatccatctacaagccgaaacccccctactcgctcctcggcctctaccacctcgacgacgccagcgagacccgcttggagcccatgaggctgacggctcccaccgatcgctgccggccatgcttgctcgattgcacggtccactacggctgcgccatgattcagatcttctccgtcaggatagctgctctgtccgccaccgccgccaccgctccggttcagatctacggattcatggctgcccgggacctctacgaacccctgcgcaactatgtcttccgctgcagccgggacgaccccttcgtcttgccggggcactactccgatcccgattcgctcataagtttgtcgggtcccaagcgaggcgtctcgctgcagaaccccgccatgatcgagtacgacctcaagatcaagagaggggaggaggaacaagacgacctgcagctcatcgacggggtggccgtcttcagcgacctcacaccgttccacggggtgtacacccagcggatccatggcgtccatggcgccgtggacatcagcttggcgctcctccgcgaagggatggaatgcaccattgaaatcagggtccccgaggtagctaatggcggcatacacttgttagtctcttgcttcgtcagcaaaataccccagaaaatcaagctcttcgatggcaccattacagagccatggaagctcagaaattatatggatggcagtgcactaattaatagaagaattgcattcttcagtgcattcttagtggcatactggacatggatcatatataagcgcaagaatagtgaccctattagatactcgttcaatatggcagggaacaatgtggtttggcagccccaggttgttgaggaaatgttgcgatactacaaggagaagatactggctgatggaagacaacttgtatttaaagaagtccatcatgaggaatgtgcaaagcaaattaatggcaagtatcacacaaacttcacaagtcgacaagtttatcacaagtttcacaagttgaaggctcagtggaaggtgattatggaggcaaagaatttgagcggggccaattttgatgacgttgagaaaaaaatcctatatgatgagactgaagttgttcgaatgactaatgccaaagataaaagggctaaattcattaacgtccccatacgttggtatgatgaaatggagtttatttttcaagacaagcatgcaacaggggaatttaatgttatgcaaacaccatatgaccgtccaatggaagatgatgattttattggtgataaaaatggcagtcctggtgatgttgacccttcatcaaattatggctcagattgtcttccagatcaagagaacaatactggaagtagctcatcttctaggcgtgcaaaaggtagaaaaactgataaaggtaaaagagttagagctgatgataatgtggtttatgagataacaggggctatggataatatgtctgaaaccatgcgtttcacacatatgacacatccaaatgaatccctattcaagataattgatgagatgacggaataccctgtcatggttcgacttgagctacagacttacctcgcgacccatgagaatatagctgccatgttgaagagtagaccactggattctattaagaaatatgtggcacaatggataatacaaaactatccagctgctatacctgtagttgctgtgcagagagacaccaccttgattgtggatttcaaggttgcgccggtcgtggccgatggtggcggcggctcctccgatcgtgtccatcgcttctacgccttcaatgcagaagcacatgattatgctttctag
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| Protein seq | MGREDDAGDHQRPEPQAKEENSSTSASPSHDPKITQEEKRWEDEDDEYEEEEEELLYDVDDGEDAPAEACVLTGVKHSDGSIYKPKPPYSLLGLYHLDDASETRLEPMRLTAPTDRCRPCLLDCTVHYGCAMIQIFSVRIAALSATAATAPVQIYGFMAARDLYEPLRNYVFRCSRDDPFVLPGHYSDPDSLISLSGPKRGVSLQNPAMIEYDLKIKRGEEEQDDLQLIDGVAVFSDLTPFHGVYTQRIHGVHGAVDISLALLREGMECTIEIRVPEVANGGIHLLVSCFVSKIPQKIKLFDGTITEPWKLRNYMDGSALINRRIAFFSAFLVAYWTWIIYKRKNSDPIRYSFNMAGNNVVWQPQVVEEMLRYYKEKILADGRQLVFKEVHHEECAKQINGKYHTNFTSRQVYHKFHKLKAQWKVIMEAKNLSGANFDDVEKKILYDETEVVRMTNAKDKRAKFINVPIRWYDEMEFIFQDKHATGEFNVMQTPYDRPMEDDDFIGDKNGSPGDVDPSSNYGSDCLPDQENNTGSSSSSRRAKGRKTDKGKRVRADDNVVYEITGAMDNMSETMRFTHMTHPNESLFKIIDEMTEYPVMVRLELQTYLATHENIAAMLKSRPLDSIKKYVAQWIIQNYPAAIPVVAVQRDTTLIVDFKVAPVVADGGGGSSDRVHRFYAFNAEAHDYAF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0020840 | OsLiXu_08g0020840.01 | Chr08 | 26817097 | 26822384 | + | NAM | ||
| CDS seq | atggggagggaagacgacgccggcgatcaccagcgaccggagccacaggcgaaggaagagaactcgtcgacgtcggcatctccttcccacgatccaaagatcacgcaggaggagaagagatgggaggatgaagatgatgagtacgaggaagaggaagaggaattgctgtatgatgtcgacgacggcgaggacgcaccggccgaagcctgcgttctcaccggcgtgaagcacagcgacggatccatctacaagccgaaacccccctactcgctcctcggcctctaccacctcgacgacgccagcgagacccgcttggagcccatgaggctgacggctcccaccgatcgctgccggccatgcttgctcgattgcacggtccactacggctgcgccatgattcagatcttctccgtcaggatagctgctctgtccgccaccgccgccaccgctccggttcagatctacggattcatggctgcccgggacctctacgaacccctgcgcaactatgtcttccgctgcagccgggacgaccccttcgtcttgccggggcactactccgatcccgattcgctcataagtttgtcgggtcccaagcgaggcgtctcgctgcagaaccccgccatgatcgagtacgacctcaagatcaagagaggggaggaggaacaagacgacctgcagctcatcgacggggtggccgtcttcagcgacctcacaccgttccacggggtgtacacccagcggatccatggcgtccatggcgccgtggacatcagcttggcgctcctccgcgaagggatggaatgcaccattgaaatcagggtccccgaggtagctaatggcggcatacacttgttagtctcttgcttcgtcagcaaaataccccagaaaatcaagctcttcgatggcaccattacagagccatggaagctcagaaattatatggatggcagtgcactaattaatagaagaattgcattcttcagtgcattcttagtggcatactggacatggatcatatataagcgcaagaatagtgaccctattagatactcgttcaatatggcagggaacaatgtggtttggcagccccaggttgttgaggaaatgttgcgatactacaaggagaagatactggctgatggaagacaacttgtatttaaagaagtccatcatgaggaatgtgcaaagcaaattaatggcaagtatcacacaaacttcacaagtcgacaagtttatcacaagtttcacaagttgaaggctcagtggaaggtgattatggaggcaaagaatttgagcggggccaattttgatgacgttgagaaaaaaatcctatatgatgagactgaagttgttcgaatgactaatgccaaagataaaagggctaaattcattaacgtccccatacgttggtatgatgaaatggagtttatttttcaagacaagcatgcaacaggggaatttaatgttatgcaaacaccatatgaccgtccaatggaagatgatgattttattggtgataaaaatggcagtcctggtgatgttgacccttcatcaaattatggctcagattgtcttccagatcaagagaacaatactggaagtagctcatcttctaggcgtgcaaaaggtagaaaaactgataaaggtaaaagagttagagctgatgataatgtggtttatgagataacaggggctatggataatatgtctgaaaccatgcgtttcacacatatgacacatccaaatgaatccctattcaagataattgatgagatgacggaataccctgtcatggttcgacttgagctacagacttacctcgcgacccatgagaatatagctgccatgttgaagagtagaccactggattctattaagaaatatgtggcacaatggataatacaaaactatccagctgctatacctgtagttgctgtgcagagagacaccaccttgattgtggatttcaaggttgcgccggtcgtggccgatggtggcggcggctcctccgatcgtgtccatcgcttctacgccttcaatgcagaagcacatgattatgctttctag
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| Protein seq | MGREDDAGDHQRPEPQAKEENSSTSASPSHDPKITQEEKRWEDEDDEYEEEEEELLYDVDDGEDAPAEACVLTGVKHSDGSIYKPKPPYSLLGLYHLDDASETRLEPMRLTAPTDRCRPCLLDCTVHYGCAMIQIFSVRIAALSATAATAPVQIYGFMAARDLYEPLRNYVFRCSRDDPFVLPGHYSDPDSLISLSGPKRGVSLQNPAMIEYDLKIKRGEEEQDDLQLIDGVAVFSDLTPFHGVYTQRIHGVHGAVDISLALLREGMECTIEIRVPEVANGGIHLLVSCFVSKIPQKIKLFDGTITEPWKLRNYMDGSALINRRIAFFSAFLVAYWTWIIYKRKNSDPIRYSFNMAGNNVVWQPQVVEEMLRYYKEKILADGRQLVFKEVHHEECAKQINGKYHTNFTSRQVYHKFHKLKAQWKVIMEAKNLSGANFDDVEKKILYDETEVVRMTNAKDKRAKFINVPIRWYDEMEFIFQDKHATGEFNVMQTPYDRPMEDDDFIGDKNGSPGDVDPSSNYGSDCLPDQENNTGSSSSSRRAKGRKTDKGKRVRADDNVVYEITGAMDNMSETMRFTHMTHPNESLFKIIDEMTEYPVMVRLELQTYLATHENIAAMLKSRPLDSIKKYVAQWIIQNYPAAIPVVAVQRDTTLIVDFKVAPVVADGGGGSSDRVHRFYAFNAEAHDYAF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0496700 | RBH | 0.000000 | 0.0 | 0.671978 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g38800 | RBH | 0.342970 | 0.115744 | 0.062748 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0496700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0020760 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0020670 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0020550 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0020770 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0020650 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0391400 | RBH | 0 | 0 | 0.0834255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0020530 | RBH | 0.0 | 0.0 | 0.385424 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0411400 | RBH | 0.1438945 | 0.0232285 | 0.4225805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0019860 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0020150 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0019990 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0021000 | RBH | 0.0 | 0.0 | 0.192967 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0020180 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G020330 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0020490 | RBH | 0.0 | 0.0 | 0.0 |
