Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0020430 | OGI:08069940 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:26553847-26554879 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aacacaatccaatctccaaatcagaaacacactcgcctcgcctcctttcgctcgtttcgtccaacaccaccaccaccaccaccgatctcgatggcgcccaaggccgagaagaagcccgcggagaagaagccggcggaggagaaggccggcgagaaggcgcccgcggccgggaagaagcccaaggccgagaagcggctgccggcgtccaagggggagaagggcggcgagggcaagaaggagcgcggcaggaagaaggccaagaagagcgtcgagacctacaagatatacatcttcaaggtgctcaagcaggtgcacccggacatcgggatctcctccaaggccatgtcaatcatgaactcgttcatcaacgacatcttcgagaagctcgccggcgaggccgccaagctcgccaggtacaacaagaagcccaccatcacctccagggagatccagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcaccaaggccgtcaccaagttcaccagctcttaggcgctctagtgtagtaggtgtttggtgattttctcttcgttttcgtcgtagcgagtccatggcagcggtggtagttgccctgtcgatctctgatttctttctcttgtgtctagtgttcctgtctagtgcttgctgattactgtaagaatctcttggttgtgcccgttgagttctgatcttaaaattaatggtgatggttgcaacctctggttgctaaattgttactatcattcttcgcgtcatttttgtgtggaattgtggatgctgtttagttggacaaatttgtttcagtgctacggtttcacgttttgaatgtttgctgctgaatatgaattgttcccttcgtggcatctggttctgtttgtagaaattctttatggagatttgccgatttttggagagaacatcctgctcagtgcgaaatttccagctcaatgtgttcaaccaagagcagattcgattcggtcggttgagtttgctttaattcgaa
More
|
||||||||||
| CDS seq | atggcgcccaaggccgagaagaagcccgcggagaagaagccggcggaggagaaggccggcgagaaggcgcccgcggccgggaagaagcccaaggccgagaagcggctgccggcgtccaagggggagaagggcggcgagggcaagaaggagcgcggcaggaagaaggccaagaagagcgtcgagacctacaagatatacatcttcaaggtgctcaagcaggtgcacccggacatcgggatctcctccaaggccatgtcaatcatgaactcgttcatcaacgacatcttcgagaagctcgccggcgaggccgccaagctcgccaggtacaacaagaagcccaccatcacctccagggagatccagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcaccaaggccgtcaccaagttcaccagctcttag
More
|
||||||||||
| Protein seq | MAPKAEKKPAEKKPAEEKAGEKAPAAGKKPKAEKRLPASKGEKGGEGKKERGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS |
||||||||||
| Function | Histone H2B.2 [UniProtKB/Swiss-Prot:Q6ZBP3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0020430 | OsLiXu_08g0020430.01 | Chr08 | 26553847 | 26554879 | + | NAM | ||
| CDS seq | atggcgcccaaggccgagaagaagcccgcggagaagaagccggcggaggagaaggccggcgagaaggcgcccgcggccgggaagaagcccaaggccgagaagcggctgccggcgtccaagggggagaagggcggcgagggcaagaaggagcgcggcaggaagaaggccaagaagagcgtcgagacctacaagatatacatcttcaaggtgctcaagcaggtgcacccggacatcgggatctcctccaaggccatgtcaatcatgaactcgttcatcaacgacatcttcgagaagctcgccggcgaggccgccaagctcgccaggtacaacaagaagcccaccatcacctccagggagatccagacctccgtccgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcaccaaggccgtcaccaagttcaccagctcttag
More
|
|||||||
| Protein seq | MAPKAEKKPAEKKPAEEKAGEKAPAAGKKPKAEKRLPASKGEKGGEGKKERGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 7.083780 | 2.264712 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0490900 | RBH | 2.205650 | 0.859153 | 6.978061 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g38300 | RBH | 1.233628 | 0.487170 | 1.479297 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0490900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0020360 | RBH | 0.367813 | 50.856544 | 3.628795 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0020280 | RBH | 0.0 | 23.729765 | 5.119534 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0020150 | RBH | 1.220377 | 51.740578 | 2.555296 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0020350 | RBH | 0.207106 | 1.968512 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0020250 | RBH | 0.0 | 83.326096 | 10.946343 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0386700 | RBH | 90.3400115 | 17.352167 | 46.4866695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0020120 | RBH | 0.557134 | 5.451856 | 0.354440 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0407000 | RBH | 76.199167 | 1.916314 | 373.9322965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0019460 | RBH | 0.080198 | 1.292732 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0019730 | RBH | 0.352563 | 35.074982 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0019580 | RBH | 0.0 | 91.607033 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0004980 | SBH | 0.646498 | 0.0 | 3.877562 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0019780 | RBH | 0.098778 | 35.981739 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G019930 | RBH | 0.150464 | 20.245613 | 6.434182 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0020090 | RBH | 0.0 | 61.114231 | 9.508064 |
