Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0020260 | OGI:08069540 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:26414474-26416520 | ||||||||
| Gene Symbol | OsbHLH087 | ||||||||||
| DNA seq | ctggagtctctctgtttgattggttagggagcaaggcgatggatgctaatggcggcaatgggtttggagtagagagcaacgcttcggctgtccatggtggcatggcgatggcttggcaatggcatggcggccagatgagcggcggcagctcgtgcgctgcggcgccgccgccggtgcaacagccggcgatggattctctcgcgtggtcgtcgacggtctcgccgagcaccggcgctgccacggcggcgagcggcgccggcttcttgctgccaccggcagccgtgcgcggcggcttcggcagtttcccggtcaactccggcggcatcgtcgagccggccggtgactgctcgtcggagtccaagaagaggagatcagacgaggtacacactcacttgctccccgtctcatcgcatcgatcaaaacattcttaataaaaagcttgatgaatcgtttgcacaattgcttgcaccggcatttgcaagattgctggaacggatcacgcgaacgcatcgaacgcgcttgccgattctgggaacgagaccgagtgtagcaaagatgtcaacggcgaagtgatcggcccgccggcgacggcggcggccggcggcaagtcgaaagggaagggagccaaggacgccggcgaggcgcagaaggaagggtacagccatgtcagagctcggaaggggcaggcaaccaacaaccacagcttagcagagagggtataccctacatacaaaatttgaacagtttcaaatttttttaaatatttttttTggggggaagagaacagtaatatttacaaatttcttcaaactgatcacctgaactatgagtcaaataattgaagattgtggtgttatgtttcttggcagctgagaagggagaagatcagcgagaggatgaagctcctgcaagaccttgtccctggctgcagcaaagtgagcattctaacccagaactgaagctacagtgcgaaggtttctgaatcatatgtgaatttcataagaatggatggtaatttgtgtttctgaatttgattcgattaggtcaccgggaaggcgttgatgctcgacgagatcatcaactatgttcagtccctgcaaagacaagtcgaggtactgacatgatcatccacagggaatgactgcaatttcacctgacaaagcacaacgcaaacactgatattcggttttcactttccatctctgcagtttctgtcgatgaagctctcggcagtcaacccaagaatcgatctcgacattgaatcacttgtcaacaattccaaggatgtatggaacttgaaccatcttcccttcctcctctctgtttttcttcttcagtttgcttcgcgagaaatcagaaattcagaaatgtgtgcgacaagttcatcatatttcttgatgatttcaggttcttcgttttcccgggcagccttcctctgctcccatgggattctccttctccacggagatgatgccggggctacaattatcacgaccgggcatccttcagggaggtgtccatggcatgatcaatccagatgtgttcaccagcctcatgcagaagcagcagcaaaatgacaagggagcattcagagagcctcaggtttgcatctgatacatgccattgttatttgttagtatcacttcggctaagttatacaggaaggtttaagccattagaaagaactaggccagccaaataccattcagtttcatctagtttcatattattatatactctctctgtcccaaaatataacaatttctagctatgtatctggaatctggataaggagatatacatagctaaaaaatgcatattttagaaaggaggttgtagtacagtagcagtttgcaagacaaacacatactgttcaccattctacactcattgcaaacgtgatcatctgatgggctctctgattcttgaacagatgcatcagactttggatggatcattccgtaacaccgcacaaatgccgtatccacaggtcatgagttcagaagagctaagcatcaggcaagatcaagatgggtttcacatgtga
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| CDS seq | atggatgctaatggcggcaatgggtttggagtagagagcaacgcttcggctgtccatggtggcatggcgatggcttggcaatggcatggcggccagatgagcggcggcagctcgtgcgctgcggcgccgccgccggtgcaacagccggcgatggattctctcgcgtggtcgtcgacggtctcgccgagcaccggcgctgccacggcggcgagcggcgccggcttcttgctgccaccggcagccgtgcgcggcggcttcggcagtttcccggtcaactccggcggcatcgtcgagccggccggtgactgctcgtcggagtccaagaagaggagatcagacgagattgctggaacggatcacgcgaacgcatcgaacgcgcttgccgattctgggaacgagaccgagtgtagcaaagatgtcaacggcgaagtgatcggcccgccggcgacggcggcggccggcggcaagtcgaaagggaagggagccaaggacgccggcgaggcgcagaaggaagggtacagccatgtcagagctcggaaggggcaggcaaccaacaaccacagcttagcagagaggctgagaagggagaagatcagcgagaggatgaagctcctgcaagaccttgtccctggctgcagcaaagtcaccgggaaggcgttgatgctcgacgagatcatcaactatgttcagtccctgcaaagacaagtcgagtttctgtcgatgaagctctcggcagtcaacccaagaatcgatctcgacattgaatcacttgtcaacaattccaaggatgttcttcgttttcccgggcagccttcctctgctcccatgggattctccttctccacggagatgatgccggggctacaattatcacgaccgggcatccttcagggaggtgtccatggcatgatcaatccagatgtgttcaccagcctcatgcagaagcagcagcaaaatgacaagggagcattcagagagcctcagatgcatcagactttggatggatcattccgtaacaccgcacaaatgccgtatccacaggtcatgagttcagaagagctaagcatcaggcaagatcaagatgggtttcacatgtga
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| Protein seq | MDANGGNGFGVESNASAVHGGMAMAWQWHGGQMSGGSSCAAAPPPVQQPAMDSLAWSSTVSPSTGAATAASGAGFLLPPAAVRGGFGSFPVNSGGIVEPAGDCSSESKKRRSDEIAGTDHANASNALADSGNETECSKDVNGEVIGPPATAAAGGKSKGKGAKDAGEAQKEGYSHVRARKGQATNNHSLAERLRREKISERMKLLQDLVPGCSKVTGKALMLDEIINYVQSLQRQVEFLSMKLSAVNPRIDLDIESLVNNSKDVLRFPGQPSSAPMGFSFSTEMMPGLQLSRPGILQGGVHGMINPDVFTSLMQKQQQNDKGAFREPQMHQTLDGSFRNTAQMPYPQVMSSEELSIRQDQDGFHM |
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| Function | Transcription factor bHLH49 [UniProtKB/Swiss-Prot:Q9CAA9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0020260 | OsLiXu_08g0020260.01 | Chr08 | 26414474 | 26416520 | + | NAM | ||
| CDS seq | atggatgctaatggcggcaatgggtttggagtagagagcaacgcttcggctgtccatggtggcatggcgatggcttggcaatggcatggcggccagatgagcggcggcagctcgtgcgctgcggcgccgccgccggtgcaacagccggcgatggattctctcgcgtggtcgtcgacggtctcgccgagcaccggcgctgccacggcggcgagcggcgccggcttcttgctgccaccggcagccgtgcgcggcggcttcggcagtttcccggtcaactccggcggcatcgtcgagccggccggtgactgctcgtcggagtccaagaagaggagatcagacgagattgctggaacggatcacgcgaacgcatcgaacgcgcttgccgattctgggaacgagaccgagtgtagcaaagatgtcaacggcgaagtgatcggcccgccggcgacggcggcggccggcggcaagtcgaaagggaagggagccaaggacgccggcgaggcgcagaaggaagggtacagccatgtcagagctcggaaggggcaggcaaccaacaaccacagcttagcagagaggctgagaagggagaagatcagcgagaggatgaagctcctgcaagaccttgtccctggctgcagcaaagtcaccgggaaggcgttgatgctcgacgagatcatcaactatgttcagtccctgcaaagacaagtcgagtttctgtcgatgaagctctcggcagtcaacccaagaatcgatctcgacattgaatcacttgtcaacaattccaaggatgttcttcgttttcccgggcagccttcctctgctcccatgggattctccttctccacggagatgatgccggggctacaattatcacgaccgggcatccttcagggaggtgtccatggcatgatcaatccagatgtgttcaccagcctcatgcagaagcagcagcaaaatgacaagggagcattcagagagcctcagatgcatcagactttggatggatcattccgtaacaccgcacaaatgccgtatccacaggtcatgagttcagaagagctaagcatcaggcaagatcaagatgggtttcacatgtga
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| Protein seq | MDANGGNGFGVESNASAVHGGMAMAWQWHGGQMSGGSSCAAAPPPVQQPAMDSLAWSSTVSPSTGAATAASGAGFLLPPAAVRGGFGSFPVNSGGIVEPAGDCSSESKKRRSDEIAGTDHANASNALADSGNETECSKDVNGEVIGPPATAAAGGKSKGKGAKDAGEAQKEGYSHVRARKGQATNNHSLAERLRREKISERMKLLQDLVPGCSKVTGKALMLDEIINYVQSLQRQVEFLSMKLSAVNPRIDLDIESLVNNSKDVLRFPGQPSSAPMGFSFSTEMMPGLQLSRPGILQGGVHGMINPDVFTSLMQKQQQNDKGAFREPQMHQTLDGSFRNTAQMPYPQVMSSEELSIRQDQDGFHM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.210147 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0487700 | RBH | 0.000000 | 0.430334 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g38080 | RBH | 0.000000 | 0.272534 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0487700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0020200 | RBH | 0.000000 | 0.000000 | 0.554585 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0020100 | RBH | 0.000000 | 1.893320 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0019990 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0020190 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0020080 | RBH | 0.000000 | 0.000000 | 0.995385 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0384200 | RBH | 0.6232575 | 3.4211225 | 3.2754655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0020000 | RBH | 0.000000 | 0.113143 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0404300 | RBH | 0.5129635 | 1.544201 | 2.1902795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0019290 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0019560 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0019430 | RBH | 0.000000 | 5.558315 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0013660 | RBH | 0.0 | 0.0 | 0.702756 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0019620 | RBH | 0.000000 | 3.975973 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G019800 | RBH | 0.000000 | 0.000000 | 0.310294 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0019930 | RBH | 0.000000 | 0.000000 | 0.000000 |
