Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0018210 | OGI:08064460 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:24318878-24328756 | ||||||||
| Gene Symbol | OsARID4, ARID4 | ||||||||||
| DNA seq | aagcaagatgtacatgaataaaatgaatcacgaataaaagttatcaatggtgcttacagagttcagagacaaatcgcttctcccatgttcccatattacgcaaaaggggtagctatgagcaacaggtatccagcatggcaatggaatacacgattgaacccagcaattaattagagcctttctgagttgtcacttcactgattacaatcaatataaaacctttcactaaataaatgatattaatgacataatacagctaaacactacattgtttaaaacatgctatctaccagccctgtcttacccaaaagtgggacagtaggctaaaaaagagtaacaaaaattaaatattccgttgtgcagatgctattctgaagccattagcactctcgggaggcggtggcttcttcttatagttcgcgaggctgcagtgggggcagatatattccaacccatctgtcttcgcatagtcctgttacagcagcagcccagatcaatgcacaacctaaataatgaaattattgaaaggaatataaaacgttagatacagatcaggaaatatttctaccttgaatgtgcctagcccttgccgtctatcacacccaaagtgcgcccattcaccgcacaacccacagttaacccaatcacctggagcactactggaaatagttggaaggaatatgttagattataccgacaggaaacagttgcaacagcaccatactaaaatcgtgtcctcgaacctgtggcagagtaagcagcattccccaccgacatcatcatgtgaaagttcgtattccaacaagtatgtctcgtaatgtctctttaacgtgtttccaacaccctattgcaacacatttagcacatcagaaacaggcaaatgaaatggcagctaacataccgtaaataaaagataacaaaaggaaacaaaaaagaataaatgtgttacagacactatgatttgtggttaaccgctcatagcaactatctgtacattaaccgcagaggctcgtgtacggcacaaaggactccaagatcaaggcttttcgtaacacccctgagccccatcactgcctaataggcccaccttttaattatttaaattaaatagaagaaacgaagatagcaaggtcattttcaaatatttctcattcagcgggcatattatttcagtgggcagagtgtctgctagcaaataccacgaatacatgggttgtgtggtttgaggaataagatggacaattgatgacatggttctaaatatgttatttgtttggaggaatggaatgtgtttgtccatcatcagctcatctctaaaagcacacactaggtagagaaatgaagaatggagtcactccaccaaatttaaggaataaccacatgatggatcaccaatcctagatgtggtctgaagcccattagagtgcgttctagccaagaccacatttagtgttccatagtgaattttgtcagcaaattattgcaggcaggcccagtggcagagagagggggaggcgcgagcaggagcttggcctacccataatttctgagattttcaatgctaaaagctgtatcttaagtgattttaaaatgaaattagcactcctgacccgtcgcttgacaaataaatcttaggattcctggctccacctgtgcagcaaattttccaggaatagaacgttcaaagctgactatgtgccaaaacatgtccctcttacaggctgacccatatagtagagtaaatctaagtagcataacaactgaagtgtgataaatggtaccacagaaaataaccaattcactgcagcaaatctaacaagattgaaacaaatatcaactacatgcataccgtcattttgtttgtaacagtatggttgctcatctttgaaaagacttgacctttccaatttatgccattgcctacataaaatccgcctctggataccacctgaatgatcaatcatcattttcatcagataaatgattaaatcagcatttctctctccatatttaaccccacaaggcgataagcccataattaatgcatgaaaatagcagcagtgaagaccaacctctttatacaagttatataaatcaaggcgttttgcatttagtactgcatcaggaaattcggctagtcctccttgaggaacaagtcgggtgtgccccctctgaagtagaaattgcatgacatcttttaagaagtcttcctgcaaaggacaaggggaaaatatgtttgaccttaactttagagagcatttcagcataaaacaataaaaaagaataggagagatggtaaatgagagtacttcagagcaaattccaataggcaaccgatcacacccatgtttcttcattggcagaggatttaacggaacagctggttcaacacgtgatgtcccagatgataattttctttgagttgttggagcaacaggtaatgcattatgccttaccggaggtgctggcaagctaggcttaacttgactagcatcatgaataaaggacggagggatacccacaaaagggtgcatctgccgcttcgaagagtgtggaataggcctcatttttgcagatttcagctttggtttgactaatagggaagtccctttcattggatgtttctggtactctccaactccatttgcactaaaagtacttgattttgactctggagttcccttcagtctgtccttaacaagggatgctgaccatcttggcagatgagaatatagaccatttacaatagcttcatttttgcaaaagaaaagaagccgatccacatcttgtctatcaaacgaagaaactggagttccatttacacaagcaattccaagtggaaccaggcttttgtaagagatttccggagcaagatatttcaaaacctagacagtagaaaacaatcttcagttagtgatgaatgatccattgaacataaccatgtaaggaaagataattagaatccacaatggtataaaacaccatatggttgagttcacacattgaggtttgacttgtcaagaaagattggtgatacaattaaagagcataggggtcttggtagtcatattatgtattaaaatgtccaaaccacttctgtttcctgatacatgtgtttttagcccattttttttaacaaacaaaaggtgttcccagctttactgatgaaaccaaagtacagacaacagcagaggaagaacgagatacttgacaggatttatcgtccacaaaaggacaacatgatatccaaaaaaaatgacacaaaagaccatggggaaattagtgggtatttttttacacatattaccaagttgtgttcagcacactacttcaactttttgaagaaaacaaacctgtcctgcccacttaggtagggtcatccagacttcaaaagtagaagctccagaagccacagatatcgaagtcaaaggctcaactgaagatggtttgtcgtccgccctaactaagacagcacgaactaactggcccttctcaacaatttcctttttaatatggttctccaaaagctacaaaattccatgaagcagcatatgacactgtaaatatcaaactgaagactaaaaaaatgctccataaatacagaaaccataccttgtcatcaaaacatgtttgcggactgccagaaacaagcaatgacacgtgtgaagaactgcatgttgtgatatcacaacgcattgtaaccaccccatgtggaagagtttcagcatgaagaggtggaggagcagcactgaaaagagaaaatgttgagagtagaaaccaactaaacatctctagcaaccaagtaatgacgtggaactacaaaataaggatagcagcatcacttaaaaatatgaccacaaaaagatagtgttaaatactctattgtgactatagtttacaagacaccgatggaagcatttaatctggctaccatttagttttttctttagggaaatatcgccgcagttaacctttaaattataggcagcacaaatcaagattagttaatttattcgatataccaccagtttgagctttattaaatttgtggtaaaagaacatgactcacacatgagctagtatttataagacacaacaggttgccagatattgaatatatattatatatgccacactgcagctgaaggtacctgactctgttctggagtctacaccctcgaatctgaaaaaaaggggaaaaatcaaacattaaacaggcagtatgtgccatattatcttgctacaaaattcatggtgcataaatattaacatacaacggtactagctgaataccagtgtcttgcaataatcaacaaatatatgttctaaattttaaagtcgtatatatttcttggaaaaaaaacatatacaattcgcaatccaacatcaaccagaaattgaaattgacaaaccagaagatcctaccaactaaataggaggtgatgggatggcagactcaccagtcaccatcaccaccactaagtttttggtggattacccaatctacagctatttttatgtaaattgttttggtggattacccaatctacagctatttttatgtaaattgcgcataaaatacataacacaaagtgtataatgaaagaaaagatgtggaaaggacataaagcaaaaagaagatactaggtgggctgtcaaccagacagcccacttatatctccaaccctgccaatactattccttctccagaaaccatagagaacagtgatgccattcgtgactcaaccattgattgggatgatgaaccagatcaaccatgaaccacaaactgagatgatgaaccagggtcgtgggatgtggcggtgaaccacgaatccggtcaccataggatgtgcaacatactctagaatgcaaattcacaactcagaaaatgagattgcaaccaagctgtatcatcaatctactccatagccatgccactatggagtatggactttgggacccagccccaccagccagtataggttgcctacaagtcacaatacttgttggctgcaataatgcatacttataatccataagctaacagactcatagttcattactccaatcaactagcatttccatgaactagattgttggggtatactattcagaactcagcacttctatgcagaaataaagcaacacatggtaagtacaagaatggacccatacttcaatattgagcagagcattcaaaccatcctccagtgagcccaacaaactagcatcctgtaaaagagatggaagtattggttgggataagaaaaatgcaataatatataagaaaatattacaaatttaggcatgaccactaacgcttaccaagatgcatggtgctccacaaataagaagcttcatgttcacatcttcatcatatatcttgatggctggaaaatgttcagagctaccttcttcctcaaccatttcattctcaggaaggaagatatttatctttggagcatcccctagtaaacgaggcccaagcttaacactttgtgcatcattatttcttgcgcagtacagtcgaaaagaagcttgtgcaagctgaaatgcatcccatgtatggctgcaggagctacataaaggaacactcgattattggatgaaaaaacaaaactaaatgggacttacgatacatacaacaaagacatgatgaatatgatacctctgaacaactgatatcaaggcttggcgaaaatgagatgctgcatacgatgaaaatgaatttctccaatataatacatatggaatcccctgggaatgaaagtgtcaaaaacacaaattccaaaatcacaaataagattctgaagtaataggagagtaggaattgttgttgaaagaaaaaagctcagtaaaactgcaaaaaaaatttgtaaatgttagcaatcatcttgccgaaaaatgaatagcaattgctcatcttacaagcatataatgatataaacattccaacaatagaacaacacctatgctagacaaaataaactaaacaaatgcagtttgagtatagtaattgtttatggaaactaagctcacgctacagatcagagcaattttttttaaaaaaaaaAgtatgaggaatcatttggatatttacaagtatatatgcatcccaacaagcagattcacaactgtggcaaaaagacatatggaacaatccacaacctgttcacaattttttttaaaaaaaactaattgaaaatatcacaaaacaaactacctttaactgaagagattgagcaagcttttccccagcaggaacttccaaataaacctgtataaaagcttagacagtaagataaatagatagaaggaagacgaccatggaaaaattggaaaagaaaaccgtttatgaaacaaaacagaaaaacaaggagcataaggttttaaaaaataaaatgttagtagctacaagtcagacaaatataagtggaatatgtaaatcaagttatgggcattaaaaaaacaaaatattggaatatcagttttaagaaccaagttggagctgttgtgttgcgtttgtgttgtgattacatgtttaagctgttgacggaatacgattgttaaattaattgtggagtgtttgaggaatcaaactgaggttagataaatcctactccctccaggttgataatacttgtcgttttggacaatgctattgtcaaactttaaaaactttgactataaataacatctaaaatatttgtcttagaagtatggtgaccatatatatagactgatcttaaaaagtacttcaataaaatcatatatttattgatatatatatatatatatatatatatatatatatatatatatatatatattgtaataaaaaatagtggtcaaagttgtttttaaagaccgtgcccttgtccaaagcgacaagtattatcagtccaaagggagtattatacaacttctgattcatccacatttgttcatttttttgcctcttaagtacgtgaccaagcattgcttttgcctcttaagcatgccagcaccagtattgacatgcatctcaacagttaatgcaaggtattagaggaaaagaacccataaaaagtgtttcgggaaatatgtgtgtcccacaaattcttatagaagccctaagaaaattgcccaacattttctacggagggagtataaatgtctgtcacattaataaaatcgaacagcacaatgaaacggaagcttatggtagtatcagttatcatttaattgaaagctaagagcgctgaccaacattgttgctagctaagagtttggtgcttactatggtcggaaaaggtggactaatgagtgaactaaatatctgtggatcagatacatcagcatcgccccagacaagtgtaccaatttcttcctcattctcaagctgctgaccctggaggtacatcaagttgggctgcacagcctgttgcgctttccggaattgatcaactgtgggattgatcagcgtatgcacctgcatcccgagccggttcataacacaacaaaagaaatgcatcaccacagtaaacagcaaaagcctactaacctccaatctcccagacgagatcagctctgggaatggatatgaaagccgtggtcgcttcacctcgggcaccagaccaggtggcttctgctgtttgtctgtaaccttcccacatagcaccgcaagcagcgtgcagttcaccagtgagctgctttggatttgagccatggctgaaccggtaaaatcacatctccccaattcagctcactccaccattgaaccctgcaacaccactagcaacagcaaatcattcatgaaactgagatcacccgaaccagtgcgtggatcaaaaagcaaactgaacagcttaagagattgactgaaaggttaaatatttcgggtgactgagaactagcaattcctggtcgtctagttttcagtcacctgaaaatttaaaatgtgtcagtcacatttgcaacctttggatctgcacatccaatgatagcagtttgtccatgctatgttgaatcaaacaaaatggttacaattccaagtgggcccattacaaaataataaaaaaaaagaacagtttggtaagtagtttggtcttttgcttgtgtccagaggattggcttcctcgttctgtgggctttaaacaccggcttaatgtgtcaggaacatttccgctcttccggcgagatttaattgctgctagtttagcccaggaagaaagaatatatttgtgtaacacttttggttgttactccttcatacttctttcctaaaactgtatgggtaaatctgtgctagctgaacaaacattactttactgtgatagattgccaatcgcaaaatataacatgtgtatgtaattttcaatttacaactccaataccaccgtaaaatttgatacaagaaaaattaacatgcttctgcattcgacaaatgcaaactggaaccatctacaagagaagaatgaacatccaacagtacaataattgcattagcctgcagtggaaatagcactataatgtgcaattcaaaaatatcaacacaatgtgcaattttgaattgattatctttatttaccagggcataaaaaaatttcttttacctatggtttccctaataactgcatttggtttattttaaaattgcacaaacatataaactgcaagacataacgatgagcacttcgcgaagcatacaaactacaaatcgcaatcaactaactgacacctgaaccaaaatcaattcacatacaggcctcaccaacatactgcatggcacaatgggacaagtaaagatgttcatgaagctgagatcactaaaccagtgcacggaccaaaaagcaaaccgaacagcttaaaaaaatgactgaaaaaattgaatatttcaggtgactgaaaactgcaactcccttcacgaaatttccagccaaaatcagaacaaacaagcaccaaatcgaaccaagcgaaccgaaccgaatcgaatcgagcaaccataccaggagacccaaatcgacgagcgcagcccaaaaccccgcgactccgagccgctatgacaccggcggaggcgccggcggcaggatgcgctcgatttgtgcggcgacggctagggcaaaagcgtggaggcgagagagcatggaaccctaatttagccgccgcacaaatccccctcttcgaatcattaataatacagacagaacgagaggggaataaacgcgtggtgaatcgcacgcgagccgacccccatcccgtcaaaatcaaatccagtcaaccactccggaaaaaagaatctatctgtctaaccaaaaaaaaggaaaaccactggaattttaacctaaatccaccaaccctcctccccgtcttaatccctccgcggattagcaatgcaaacccctcaaataataaataaccgagcaagtagcaatctccaggaaatattttgattggccgggacgaaccgctcgagccactggagatcgtagtcgtaccgtgcacggaagcggaatccacagctcctgcttgatccctcctgcgcttcctcttcccctcgtggcgaggatgatgatgatgatgatgatgacggcgacgacgaccgcggcgatgattcatttacctgcggagaggaataaaaacaaagagcacggattaaattagctttttttcttttcgcagcgggatcgcgaggaaaagttgggaggaaattatacgaattctttttctgcggtttttttttcctcttccttctctctgattctctgctgctgcacgagtgctttttagattttttttggccacagcacagcctagttgcgatcatatgttgttttggcgatttgggtttggttggttccggtggtgatcggaggaaggaatttgggtggggggaat
More
|
||||||||||
| CDS seq | atggctcaaatccaaagcagctcactggtgaactgcacgctgcttgcggtgctatgtgggaaggttacagacaaacagcagaagccacctggtctggtgcccgaggtgaagcgaccacggctttcatatccattcccagagctgatctcgtctgggagattggaggtgcatacgctgatcaatcccacagttgatcaattccggaaagcgcaacaggctgtgcagcccaacttgatgtacctccagggtcagcagcttgagaatgaggaagaaattggtacacttgtctggggcgatgctgatgtatctgatccacagatatttagttcactcattagtccaccttttccgaccatagtttatttggaagttcctgctggggaaaagcttgctcaatctcttcagttaaaggggattccatatgtattatattggagaaattcattttcatcgtatgcagcatctcattttcgccaagccttgatatcagttgttcagagctcctgcagccatacatgggatgcatttcagcttgcacaagcttcttttcgactgtactgcgcaagaaataatgatgcacaaagtgttaagcttgggcctcgtttactaggggatgctccaaagataaatatcttccttcctgagaatgaaatggttgaggaagaaggtagctctgaacattttccagccatcaagatatatgatgaagatgtgaacatgaagcttcttatttgtggagcaccatgcatcttggatgctagtttgttgggctcactggaggatggtttgaatgctctgctcaatattgaaattcgagggtgtagactccagaacagagtcagtgctgctcctccacctcttcatgctgaaactcttccacatggggtggttacaatgcgttgtgatatcacaacatgcagttcttcacacgtgtcattgcttgtttctggcagtccgcaaacatgttttgatgacaagcttttggagaaccatattaaaaaggaaattgttgagaagggccagttagttcgtgctgtcttagttagggcggacgacaaaccatcttcagttgagcctttgacttcgatatctgtggcttctggagcttctacttttgaagtctggatgaccctacctaagtgggcaggacaggttttgaaatatcttgctccggaaatctcttacaaaagcctggttccacttggaattgcttgtgtaaatggaactccagtttcttcgtttgatagacaagatgtggatcggcttcttttcttttgcaaaaatgaagctattgtaaatggtctatattctcatctgccaagatggtcagcatcccttgttaaggacagactgaagggaactccagagtcaaaatcaagtacttttagtgcaaatggagttggagagtaccagaaacatccaatgaaagggacttccctattagtcaaaccaaagctgaaatctgcaaaaatgaggcctattccacactcttcgaagcggcagatgcacccttttgtgggtatccctccgtcctttattcatgatgctagtcaagttaagcctagcttgccagcacctccggtaaggcataatgcattacctgttgctccaacaactcaaagaaaattatcatctgggacatcacgtgttgaaccagctgttccgttaaatcctctgccaatgaagaaacatgggtgtgatcggttgcctattggaatttgctctgaagaagacttcttaaaagatgtcatgcaatttctacttcagagggggcacacccgacttgttcctcaaggaggactagccgaatttcctgatgcagtactaaatgcaaaacgccttgatttatataacttgtataaagaggtggtatccagaggcggattttatgtaggcaatggcataaattggaaaggtcaagtcttttcaaagatgagcaaccatactgttacaaacaaaatgacgggtgttggaaacacgttaaagagacattacgagacatacttgttggaatacgaactttcacatgatgatgtcggtggggaatgctgcttactctgccacagtagtgctccaggtgattgggttaactgtgggttgtgcggtgaatgggcgcactttgggtgtgatagacggcaagggctaggcacattcaaggactatgcgaagacagatgggttggaatatatctgcccccactgcagcctcgcgaactataagaagaagccaccgcctcccgagagtgctaatggcttcagaatagcatctgcacaacggaatatttaa
More
|
||||||||||
| Protein seq | MAQIQSSSLVNCTLLAVLCGKVTDKQQKPPGLVPEVKRPRLSYPFPELISSGRLEVHTLINPTVDQFRKAQQAVQPNLMYLQGQQLENEEEIGTLVWGDADVSDPQIFSSLISPPFPTIVYLEVPAGEKLAQSLQLKGIPYVLYWRNSFSSYAASHFRQALISVVQSSCSHTWDAFQLAQASFRLYCARNNDAQSVKLGPRLLGDAPKINIFLPENEMVEEEGSSEHFPAIKIYDEDVNMKLLICGAPCILDASLLGSLEDGLNALLNIEIRGCRLQNRVSAAPPPLHAETLPHGVVTMRCDITTCSSSHVSLLVSGSPQTCFDDKLLENHIKKEIVEKGQLVRAVLVRADDKPSSVEPLTSISVASGASTFEVWMTLPKWAGQVLKYLAPEISYKSLVPLGIACVNGTPVSSFDRQDVDRLLFFCKNEAIVNGLYSHLPRWSASLVKDRLKGTPESKSSTFSANGVGEYQKHPMKGTSLLVKPKLKSAKMRPIPHSSKRQMHPFVGIPPSFIHDASQVKPSLPAPPVRHNALPVAPTTQRKLSSGTSRVEPAVPLNPLPMKKHGCDRLPIGICSEEDFLKDVMQFLLQRGHTRLVPQGGLAEFPDAVLNAKRLDLYNLYKEVVSRGGFYVGNGINWKGQVFSKMSNHTVTNKMTGVGNTLKRHYETYLLEYELSHDDVGGECCLLCHSSAPGDWVNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGLEYICPHCSLANYKKKPPPPESANGFRIASAQRNI |
||||||||||
| Function | AT-rich interactive domain-containing protein 4 [UniProtKB/Swiss-Prot:Q6NQ79] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0018210 | OsLiXu_08g0018210.01 | Chr08 | 24318944 | 24328146 | - | NAM | ||
| CDS seq | atggctcaaatccaaagcagctcactggtgaactgcacgctgcttgcggtgctatgtgggaaggttacagacaaacagcagaagccacctggtctggtgcccgaggtgaagcgaccacggctttcatatccattcccagagctgatctcgtctgggagattggaggtgcatacgctgatcaatcccacagttgatcaattccggaaagcgcaacaggctgtgcagcccaacttgatgtacctccagggtcagcagcttgagaatgaggaagaaattggtacacttgtctggggcgatgctgatgtatctgatccacagatatttagttcactcattagtccaccttttccgaccatagtttatttggaagttcctgctggggaaaagcttgctcaatctcttcagttaaaggggattccatatgtattatattggagaaattcattttcatcgtatgcagcatctcattttcgccaagccttgatatcagttgttcagagctcctgcagccatacatgggatgcatttcagcttgcacaagcttcttttcgactgtactgcgcaagaaataatgatgcacaaagtgttaagcttgggcctcgtttactaggggatgctccaaagataaatatcttccttcctgagaatgaaatggttgaggaagaaggtagctctgaacattttccagccatcaagatatatgatgaagatgtgaacatgaagcttcttatttgtggagcaccatgcatcttggatgctagtttgttgggctcactggaggatggtttgaatgctctgctcaatattgaaattcgagggtgtagactccagaacagagtcagtgctgctcctccacctcttcatgctgaaactcttccacatggggtggttacaatgcgttgtgatatcacaacatgcagttcttcacacgtgtcattgcttgtttctggcagtccgcaaacatgttttgatgacaagcttttggagaaccatattaaaaaggaaattgttgagaagggccagttagttcgtgctgtcttagttagggcggacgacaaaccatcttcagttgagcctttgacttcgatatctgtggcttctggagcttctacttttgaagtctggatgaccctacctaagtgggcaggacaggttttgaaatatcttgctccggaaatctcttacaaaagcctggttccacttggaattgcttgtgtaaatggaactccagtttcttcgtttgatagacaagatgtggatcggcttcttttcttttgcaaaaatgaagctattgtaaatggtctatattctcatctgccaagatggtcagcatcccttgttaaggacagactgaagggaactccagagtcaaaatcaagtacttttagtgcaaatggagttggagagtaccagaaacatccaatgaaagggacttccctattagtcaaaccaaagctgaaatctgcaaaaatgaggcctattccacactcttcgaagcggcagatgcacccttttgtgggtatccctccgtcctttattcatgatgctagtcaagttaagcctagcttgccagcacctccggtaaggcataatgcattacctgttgctccaacaactcaaagaaaattatcatctgggacatcacgtgttgaaccagctgttccgttaaatcctctgccaatgaagaaacatgggtgtgatcggttgcctattggaatttgctctgaagaagacttcttaaaagatgtcatgcaatttctacttcagagggggcacacccgacttgttcctcaaggaggactagccgaatttcctgatgcagtactaaatgcaaaacgccttgatttatataacttgtataaagaggtggtatccagaggcggattttatgtaggcaatggcataaattggaaaggtcaagtcttttcaaagatgagcaaccatactgttacaaacaaaatgacgggtgttggaaacacgttaaagagacattacgagacatacttgttggaatacgaactttcacatgatgatgtcggtggggaatgctgcttactctgccacagtagtgctccaggtgattgggttaactgtgggttgtgcggtgaatgggcgcactttgggtgtgatagacggcaagggctaggcacattcaaggactatgcgaagacagatgggttggaatatatctgcccccactgcagcctcgcgaactataagaagaagccaccgcctcccgagagtgctaatggcttcagaatagcatctgcacaacggaatatttaa
More
|
|||||||
| Protein seq | MAQIQSSSLVNCTLLAVLCGKVTDKQQKPPGLVPEVKRPRLSYPFPELISSGRLEVHTLINPTVDQFRKAQQAVQPNLMYLQGQQLENEEEIGTLVWGDADVSDPQIFSSLISPPFPTIVYLEVPAGEKLAQSLQLKGIPYVLYWRNSFSSYAASHFRQALISVVQSSCSHTWDAFQLAQASFRLYCARNNDAQSVKLGPRLLGDAPKINIFLPENEMVEEEGSSEHFPAIKIYDEDVNMKLLICGAPCILDASLLGSLEDGLNALLNIEIRGCRLQNRVSAAPPPLHAETLPHGVVTMRCDITTCSSSHVSLLVSGSPQTCFDDKLLENHIKKEIVEKGQLVRAVLVRADDKPSSVEPLTSISVASGASTFEVWMTLPKWAGQVLKYLAPEISYKSLVPLGIACVNGTPVSSFDRQDVDRLLFFCKNEAIVNGLYSHLPRWSASLVKDRLKGTPESKSSTFSANGVGEYQKHPMKGTSLLVKPKLKSAKMRPIPHSSKRQMHPFVGIPPSFIHDASQVKPSLPAPPVRHNALPVAPTTQRKLSSGTSRVEPAVPLNPLPMKKHGCDRLPIGICSEEDFLKDVMQFLLQRGHTRLVPQGGLAEFPDAVLNAKRLDLYNLYKEVVSRGGFYVGNGINWKGQVFSKMSNHTVTNKMTGVGNTLKRHYETYLLEYELSHDDVGGECCLLCHSSAPGDWVNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGLEYICPHCSLANYKKKPPPPESANGFRIASAQRNI
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0018210 | OsLiXu_08g0018210.02 | Chr08 | 24318944 | 24328010 | - | NAM | ||
| CDS seq | atggctcaaatccaaagcagctcactggtgaactgcacgctgcttgcggtgctatgtgggaaggttacagacaaacagcagaagccacctggtctggtgcccgaggtgaagcgaccacggctttcatatccattcccagagctgatctcgtctgggagattggaggtgcatacgctgatcaatcccacagttgatcaattccggaaagcgcaacaggctgtgcagcccaacttgatgtacctccagggtcagcagcttgagaatgaggaagaaattggtacacttgtctggggcgatgctgatgtatctgatccacagatatttagttcactcattagtccaccttttccgaccatagtttatttggaagttcctgctggggaaaagcttgctcaatctcttcagttaaaggggattccatatgtattatattggagaaattcattttcatcgtatgcagcatctcattttcgccaagccttgatatcagttgttcagagctcctgcagccatacatgggatgcatttcagcttgcacaagcttcttttcgactgtactgcgcaagaaataatgatgcacaaagtgttaagcttgggcctcgtttactaggggatgctccaaagataaatatcttccttcctgagaatgaaatggttgaggaagaaggtagctctgaacattttccagccatcaagatatatgatgaagatgtgaacatgaagcttcttatttgtggagcaccatgcatcttggatgctagtttgttgggctcactggaggatggtttgaatgctctgctcaatattgaaattcgagggtgtagactccagaacagagtcagtgctgctcctccacctcttcatgctgaaactcttccacatggggtggttacaatgcgttgtgatatcacaacatgcagttcttcacacgtgtcattgcttgtttctggcagtccgcaaacatgttttgatgacaagcttttggagaaccatattaaaaaggaaattgttgagaagggccagttagttcgtgctgtcttagttagggcggacgacaaaccatcttcagttgagcctttgacttcgatatctgtggcttctggagcttctacttttgaagtctggatgaccctacctaagtgggcaggacaggttttgaaatatcttgctccggaaatctcttacaaaagcctggttccacttggaattgcttgtgtaaatggaactccagtttcttcgtttgatagacaagatgtggatcggcttcttttcttttgcaaaaatgaagctattgtaaatggtctatattctcatctgccaagatggtcagcatcccttgttaaggacagactgaagggaactccagagtcaaaatcaagtacttttagtgcaaatggagttggagagtaccagaaacatccaatgaaagggacttccctattagtcaaaccaaagctgaaatctgcaaaaatgaggcctattccacactcttcgaagcggcagatgcacccttttgtgggtatccctccgtcctttattcatgatgctagtcaagttaagcctagcttgccagcacctccggtaaggcataatgcattacctgttgctccaacaactcaaagaaaattatcatctgggacatcacgtgttgaaccagctgttccgttaaatcctctgccaatgaagaaacatgggtgtgatcggttgcctattggaatttgctctgaagaagacttcttaaaagatgtcatgcaatttctacttcagagggggcacacccgacttgttcctcaaggaggactagccgaatttcctgatgcagtactaaatgcaaaacgccttgatttatataacttgtataaagaggtggtatccagaggcggattttatgtaggcaatggcataaattggaaaggtcaagtcttttcaaagatgagcaaccatactgttacaaacaaaatgacgggtgttggaaacacgttaaagagacattacgagacatacttgttggaatacgaactttcacatgatgatgtcggtggggaatgctgcttactctgccacagtagtgctccaggtgattgggttaactgtgggttgtgcggtgaatgggcgcactttgggtgtgatagacggcaagggctaggcacattcaaggactatgcgaagacagatgggttggaatatatctgcccccactgcagcctcgcgaactataagaagaagccaccgcctcccgagagtgctaatggcttcagaatagcatctgcacaacggaatatttaa
More
|
|||||||
| Protein seq | MAQIQSSSLVNCTLLAVLCGKVTDKQQKPPGLVPEVKRPRLSYPFPELISSGRLEVHTLINPTVDQFRKAQQAVQPNLMYLQGQQLENEEEIGTLVWGDADVSDPQIFSSLISPPFPTIVYLEVPAGEKLAQSLQLKGIPYVLYWRNSFSSYAASHFRQALISVVQSSCSHTWDAFQLAQASFRLYCARNNDAQSVKLGPRLLGDAPKINIFLPENEMVEEEGSSEHFPAIKIYDEDVNMKLLICGAPCILDASLLGSLEDGLNALLNIEIRGCRLQNRVSAAPPPLHAETLPHGVVTMRCDITTCSSSHVSLLVSGSPQTCFDDKLLENHIKKEIVEKGQLVRAVLVRADDKPSSVEPLTSISVASGASTFEVWMTLPKWAGQVLKYLAPEISYKSLVPLGIACVNGTPVSSFDRQDVDRLLFFCKNEAIVNGLYSHLPRWSASLVKDRLKGTPESKSSTFSANGVGEYQKHPMKGTSLLVKPKLKSAKMRPIPHSSKRQMHPFVGIPPSFIHDASQVKPSLPAPPVRHNALPVAPTTQRKLSSGTSRVEPAVPLNPLPMKKHGCDRLPIGICSEEDFLKDVMQFLLQRGHTRLVPQGGLAEFPDAVLNAKRLDLYNLYKEVVSRGGFYVGNGINWKGQVFSKMSNHTVTNKMTGVGNTLKRHYETYLLEYELSHDDVGGECCLLCHSSAPGDWVNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGLEYICPHCSLANYKKKPPPPESANGFRIASAQRNI
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0018210 | OsLiXu_08g0018210.03 | Chr08 | 24318878 | 24328756 | - | IsoSeq | ||
| CDS seq | atgctctgctcaatattgaaattcgagggtgtagactccagaacagagtcagtgctgctcctccacctcttcatgctgaaactcttccacatggggtggttacaatgcgttgtgatatcacaacatgcagttcttcacacgtgtcattgcttgtttctggcagtccgcaaacatgttttgatgacaagcttttggagaaccatattaaaaaggaaattgttgagaagggcc
More
|
|||||||
| Protein seq | MLCSILKFEGVDSRTESVLLLHLFMLKLFHMGWLQCVVISQHAVLHTCHCLFLAVRKHVLMTSFWRTILKRKLLRRA |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr08 | 24326642 | 24327868 | - | OsLiXu_08g0018210.01 | OsLiXu_08g0018210.01,OsLiXu_08g0018210.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.397239 | 1.263690 | 2.057820 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0451400 | RBH | 2.599245 | 3.884311 | 3.148744 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g35000 | RBH | 1.605093 | 1.759593 | 0.690323 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0451400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0018120 | RBH | 1.276187 | 9.849139 | 7.328116 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0017990 | RBH | 0.165609 | 3.609469 | 2.632316 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0017930 | RBH | 1.284288 | 5.857504 | 9.324099 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0018190 | RBH | 0.465441 | 0.533887 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0018040 | RBH | 12.799436 | 5.637774 | 21.007769 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0352900 | RBH | 8.334441 | 14.150129 | 12.079542 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0017970 | RBH | 0.436620 | 0.657838 | 2.465963 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0370100 | RBH | 9.0515035 | 15.4582955 | 14.557594 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0017300 | RBH | 0.431156 | 0.220857 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0017570 | RBH | 0.672360 | 0.450635 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0017400 | RBH | 9.516006 | 23.129610 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0011140 | RBH | 2.230339 | 0.0 | 3.536557 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0017610 | RBH | 0.610785 | 8.585841 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G017810 | RBH | 0.634735 | 2.763676 | 2.903577 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0017880 | SBH | 1.341773 | 17.909979 | 11.033903 |
