Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0017490 | OGI:08062350 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:23489773-23491423 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | accgtcaaaaaaaattatattcactcaaggacagcataagatcctactagaacactaccccacctaggactccgattagcacatcatcatcatcattatccatgcacacccagattagctcaagaacaaagctagtaatcactgtacttagtggtagtactaattgtccctgcatcatccattgacatctcttcatcagatccaaaaaaaaaaAggccacatttttgtttatgaatctaatctttgcttgggcctcaccattagagcaaaagctaatttgctgctgctactactactacttgctaggttgactgatgagtcatttcattagccattagggttggttaattagacaggaaaaaggctacaaaaaaAgagagaaaaaaagaaaagaaaagaaagagacaaccttgattcgactgtgctactagtcttgattaagtcgactgcggcgagccgccgccgccgccactcgccgttgccgcggcgtggtcggcggcggcggcatgcgtggatgagccgttgatgctgaagtcagtgagcactggtggtggggcgagtggcgcggcggcggcggcggcggcggcggagcggcgggcgctgtggccgccgaggaagttgtgcttgttgttgtgcatccagaccttgaagacgcccttgccgacgccgatctcgcggcagcactcgtcgacgacggcctcgtcgcgcttctggaggcgccacccgagccgctccgacagcgcctgcatccgctgcttctgctccgggctgaacttggtccggaaccgcttcctcgacgccgacgtcgcggcgcccggcggaggcgggggccccatggcggcggcggcggcgtggggcctcgacgccgccacggccggggcggacgcggagccaagcgacagcagcatgtgcgtcgcggaggggaggtaccccggagagagcaccggtggcggcgcctgcagcggcgaggcggagcggtcgtcgtcgtagtcggacatctcggagtcctcggaatcatcatcgtcggcggcggcgtcgtcgtcgtggtggtgcccgggcccgcgcacgcggtcggtctccggcgactgctcgcgacgctggtggctcccatgcagcagcagctgcggcgccaccgccaccgccaccgccgcggtccgcggcagatgctgctgaggctgcggcggcggcggtggcggtggcggtggcggcggtggcggaggcagcgcgaggagaggcggggagggcggcgcctcggggagccggcggtggaagttgcggtggcacccacacgcggcgcacttgagcgacgccggatcagcggcatccgccgccggcgacggcatgaactccccgcacccatccaccgcgtgcccgcccaagctcgccgcgtgattcttcaagcactccctgtacaccgccgccgtcgccgacgccggcgtcgccttgctcttccccgccgccgccgccgccgcgccgccgttggggaacaccaccggcctgtacttgacgccgacgacggcctccatcgccagagcacgttcggttcttgagagagagatcaactcagctcaccgcgcgggttttatcatccatgggagaaggacaaggagaaggagaaggagaggaaaactacaggtgaggaggtggaggc
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| CDS seq | atggaggccgtcgtcggcgtcaagtacaggccggtggtgttccccaacggcggcgcggcggcggcggcggcggggaagagcaaggcgacgccggcgtcggcgacggcggcggtgtacagggagtgcttgaagaatcacgcggcgagcttgggcgggcacgcggtggatgggtgcggggagttcatgccgtcgccggcggcggatgccgctgatccggcgtcgctcaagtgcgccgcgtgtgggtgccaccgcaacttccaccgccggctccccgaggcgccgccctccccgcctctcctcgcgctgcctccgccaccgccgccaccgccaccgccaccgccgccgccgcagcctcagcagcatctgccgcggaccgcggcggtggcggtggcggtggcgccgcagctgctgctgcatgggagccaccagcgtcgcgagcagtcgccggagaccgaccgcgtgcgcgggcccgggcaccaccacgacgacgacgccgccgccgacgatgatgattccgaggactccgagatgtccgactacgacgacgaccgctccgcctcgccgctgcaggcgccgccaccggtgctctctccggggtacctcccctccgcgacgcacatgctgctgtcgcttggctccgcgtccgccccggccgtggcggcgtcgaggccccacgccgccgccgccgccatggggcccccgcctccgccgggcgccgcgacgtcggcgtcgaggaagcggttccggaccaagttcagcccggagcagaagcagcggatgcaggcgctgtcggagcggctcgggtggcgcctccagaagcgcgacgaggccgtcgtcgacgagtgctgccgcgagatcggcgtcggcaagggcgtcttcaaggtctggatgcacaacaacaagcacaacttcctcggcggccacagcgcccgccgctccgccgccgccgccgccgccgccgcgccactcgccccaccaccagtgctcactgacttcagcatcaacggctcatccacgcatgccgccgccgccgaccacgccgcggcaacggcgagtggcggcggcggcggctcgccgcagtcgacttaa
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| Protein seq | MEAVVGVKYRPVVFPNGGAAAAAAGKSKATPASATAAVYRECLKNHAASLGGHAVDGCGEFMPSPAADAADPASLKCAACGCHRNFHRRLPEAPPSPPLLALPPPPPPPPPPPPPPQPQQHLPRTAAVAVAVAPQLLLHGSHQRREQSPETDRVRGPGHHHDDDAAADDDDSEDSEMSDYDDDRSASPLQAPPPVLSPGYLPSATHMLLSLGSASAPAVAASRPHAAAAAMGPPPPPGAATSASRKRFRTKFSPEQKQRMQALSERLGWRLQKRDEAVVDECCREIGVGKGVFKVWMHNNKHNFLGGHSARRSAAAAAAAAPLAPPPVLTDFSINGSSTHAAAADHAAATASGGGGGSPQST |
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| Function | Zinc-finger homeodomain protein 10 [UniProtKB/Swiss-Prot:Q6Z528] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0017490 | OsLiXu_08g0017490.01 | Chr08 | 23489773 | 23491423 | - | NAM | ||
| CDS seq | atggaggccgtcgtcggcgtcaagtacaggccggtggtgttccccaacggcggcgcggcggcggcggcggcggggaagagcaaggcgacgccggcgtcggcgacggcggcggtgtacagggagtgcttgaagaatcacgcggcgagcttgggcgggcacgcggtggatgggtgcggggagttcatgccgtcgccggcggcggatgccgctgatccggcgtcgctcaagtgcgccgcgtgtgggtgccaccgcaacttccaccgccggctccccgaggcgccgccctccccgcctctcctcgcgctgcctccgccaccgccgccaccgccaccgccaccgccgccgccgcagcctcagcagcatctgccgcggaccgcggcggtggcggtggcggtggcgccgcagctgctgctgcatgggagccaccagcgtcgcgagcagtcgccggagaccgaccgcgtgcgcgggcccgggcaccaccacgacgacgacgccgccgccgacgatgatgattccgaggactccgagatgtccgactacgacgacgaccgctccgcctcgccgctgcaggcgccgccaccggtgctctctccggggtacctcccctccgcgacgcacatgctgctgtcgcttggctccgcgtccgccccggccgtggcggcgtcgaggccccacgccgccgccgccgccatggggcccccgcctccgccgggcgccgcgacgtcggcgtcgaggaagcggttccggaccaagttcagcccggagcagaagcagcggatgcaggcgctgtcggagcggctcgggtggcgcctccagaagcgcgacgaggccgtcgtcgacgagtgctgccgcgagatcggcgtcggcaagggcgtcttcaaggtctggatgcacaacaacaagcacaacttcctcggcggccacagcgcccgccgctccgccgccgccgccgccgccgccgcgccactcgccccaccaccagtgctcactgacttcagcatcaacggctcatccacgcatgccgccgccgccgaccacgccgcggcaacggcgagtggcggcggcggcggctcgccgcagtcgacttaa
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| Protein seq | MEAVVGVKYRPVVFPNGGAAAAAAGKSKATPASATAAVYRECLKNHAASLGGHAVDGCGEFMPSPAADAADPASLKCAACGCHRNFHRRLPEAPPSPPLLALPPPPPPPPPPPPPPQPQQHLPRTAAVAVAVAPQLLLHGSHQRREQSPETDRVRGPGHHHDDDAAADDDDSEDSEMSDYDDDRSASPLQAPPPVLSPGYLPSATHMLLSLGSASAPAVAASRPHAAAAAMGPPPPPGAATSASRKRFRTKFSPEQKQRMQALSERLGWRLQKRDEAVVDECCREIGVGKGVFKVWMHNNKHNFLGGHSARRSAAAAAAAAPLAPPPVLTDFSINGSSTHAAAADHAAATASGGGGGSPQST
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0017490 | OsLiXu_08g0017490.02 | Chr08 | 23489901 | 23491320 | - | IsoSeq | ||
| CDS seq | agaaccgaacgtgctctggcgatggaggccgtcgtcggcgtcaagtacaggccggtggtgttcccgccgccgccgcgccactcgccccaccaccagtgctcactgacttcagcatcaacggctcatccacgcatgccgccgccgccgaccacgccgcggcaacggcgagtggcggcggcggcggctcgccgcagtcgacttaatcaa
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| Protein seq | RTERALAMEAVVGVKYRPVVFPPPPRHSPHHQCSLTSASTAHPRMPPPPTTPRQRRVAAAAARRSRLNQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.865432 | 0.072298 | 0.694412 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0438400 | RBH | 2.147436 | 1.962626 | 2.203015 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g34010 | RBH | 1.023728 | 0.642046 | 0.380644 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0438400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0017350 | RBH | 0.634780 | 0.0 | 1.252375 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0017230 | RBH | 0.249179 | 0.0 | 0.890352 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0017180 | RBH | 3.248115 | 0.0 | 1.231000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0017480 | RBH | 0.185413 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0017320 | RBH | 9.498600 | 2.140794 | 6.107295 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0338700 | RBH | 5.5820035 | 5.8952785 | 34.3809585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0017220 | RBH | 0.405101 | 0.099441 | 0.678051 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0358900 | RBH | 5.1806105 | 9.889608 | 34.9502115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0016590 | RBH | 0.140816 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0016860 | RBH | 0.487525 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0016670 | RBH | 12.224355 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0010050 | RBH | 1.986592 | 0.0 | 1.787524 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0016890 | RBH | 0.572485 | 0.856837 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G017050 | RBH | 0.981299 | 0.0 | 0.499292 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0017150 | RBH | 2.567914 | 1.124185 | 1.138191 |
