Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0016910 | OGI:08060780 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:22798907-22803233 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggggaggcagccgtgctgcgacaaggtggggctgaagaaggggccatggacggcggaggaggaccagaagctcatcaccttcctcctcaccaacggccagtgctgctggcgcgccgtcccCaagctcgccggtgcgtcgatcgagatcctcgtgtcgcagtactactttatgtgtgttttggctgtgtgcatcctacgatcgaggccgaaagtttatatacttcattgtctgaaaagggtatgtttgaataaaattataggttctccggtgcgggaagagctgcaggctacggtggacgaactacctccggccggatctcaagagggggctgctctccgacgccgaggagaagatcgtcgtcgacctacatgcccaattgggcaataggtacgataacattgtcctcgacacgttgggacaacatgctgaacgtatgtaaatagttttttatgtatatataaccatttatatacaaaaaatgttaggtggtctaagattgccaaaataaataaataaataaatcagtgctactaaatcacaagctggaactttttttccCtttttttttcgcgtcggtgaccgtcttcaggtacactataactaaccaccaaaatccatgacatttacatgagcactaacaccccccggagcacacgcgtcatgggagacaggatttgcagagagcaacagccCaagaaaaggggcatgagctttgtgaaaattgtgactctgggtggcacatatgtcactgcaaaacttgttgcatgaacagggtcagaatgtgagttggagcaggaggaggaaaatgttggttgggagaacacaatctttggaccactaacagtctctccatcatgtattgtgatctgatcatctcttcctttgtgtggaattgaagtggattcagaaagggGaaaaaaaaagaaagaaaaggagctgccttgcatggcatggcaatggcacctggccctcctcatctttcagggtttcacatatcccaatcaaaggcttaatagcacatctaattgtctaatgatTaaggatgatgggaggcaaaagtacatccatgatgatgataataataataatctctggtttttgtatagtaccatgtttttcagctttgagtggcgaaatttgacctcagcgcgacaccgagacgcggtgtactgattgatggcttgttctagctagctgaagtcagagggtgccCttttctttttttTgaactgcagtcagatgatgcttttgattgtctgaaaggatacttagtgttggtgccaaactgcccaatcaagatatgccagggaaaagaaatgatgaagtgcactactttaccctaaattgacttgggaattcaaatTaagcatgcagttcttcagtcaacctatgaagtgatcattcatgttcgagaaaaaaatttgtaaaaaataagagtgtttttacgatggtctctaccagcagtattctacgactagtacagatcacaataaaaattgtcaaaAtataaacgggtcttttTgtttactaaagaagatgtagtgatcattccgaccttgtgtcctgaccggcctgaagtgaagtcttgATggatactgttaagttggtcgatcagttaaaatgaaggtcatctagtacaacaaaataatggctttcattgccaatcaatctattgctggcactactacaattcagaacacaattttaccactcaaattactttttactcactattcatttcattTaaACctataaaaatttagtcgaatatcctccaccgtcatcgcgtcgcgatccgcaatctctctgtatggatagaaggaagaatgtttTggatcttagctcacagacttttgtgggcaatttcatccctgtgatatcatgggaagtttcatatgttgacaagggagagtgagcagtgttgacctcaatgatcattcaacatttcctgcctgctggaagccaaaatcttgtccaacaagcCgtactccatactgcggctacatatacctctgaaattgctgatcaaatcttcaaaaaaaattgcaagttctacacgcgcttgctcgatccgtcgcggccccataatttttcaccgggaaaaaaAtggatgaaaattttTaaccatggtaggacaataaggacccCtttgcaagtcatatctgaagctctagaacagatgactgaacattttacatgttgtcaattaattaagctggtcggcagcttaatcgattgatctgaggataattaatcttgtcaataactgttttcacctaaaaacaggtagtagaattctctgatctcacctaaaatccatccagggcaaaaggtagaccagaggataattttgtcagaacatgagatgaaagtaaagggagaagaaaagaaagcatggaagctttgtagtgcagcacttgcaattgcaaagcaagcaaaagggacccaagagcagaagctcatgcttcatggtggcacgtaggccaccctcacagccttcactgccgacgcccggcccggGcccaccgcgcagcctcaccggcctcggacacgtgtacatagagctagtaagcaaaataaaaaataaaaaataaaaaaaataaagagagatagaagcttgaactacacatcagtacatcacacacagagagacccttggtgcttactacacatcagtagttagctactggctggtttgttttgtctcctcttcttgcctcccccttataaaggaaggtgagcattgcatcttgctccttagtactcctcctcctgcatcatcatcccaatcctcaattcagaatTcagaactgccatttgctaccttacataccatacctagctgaattgctgtcagttaatctcttgatcagatcgatcaccctgcagcttcttgttgtttctagcatttctggtgaagaaaccaaatcttcagcagcttaaggtaggagatcatcaatggggaggcagccgtgctgcgacaaggtggggctgaagaaggggccatggacggcggaggaggaccagaagctcatcaccttcctcctcacCaacggccagtgctgctggcgcgccgtccccaagctcgccggtgcgtcgatcgagatcctcgtgtcgcagtactacttTatgtgtGttttggctgtgtgcatcctacgatcgaggccgaaagtttatatactttcattgtctgaaaaagggtatgtttgtaataaaattatagggcttctccggtgcgggaagagctgcaggctacggtggacgaactacctccggccggatctcaagagggggctgctctccgacgccgaggagaagatcgtcgtcgacctacatgcccaattgggcaataggtacgataacattgtcctcgacacgttgggacaacatgcctgaacgtatgataaattagttttttaatgtatatataaccatttttatatacaaaaaatgttaggtggtctaagattgcgtctcatttgcctgggaggacggacaacgagatcaagaaccactggaacactcacatcaagaagaagctcaagaaaatggggatcgatcccCtcacccacaggcccctccagccgccgccgtcgccgtcgccggagaagaagcacgcagagagaaagaacacggcggcggccgcggcggtggccgagcagcatcagcacgacgaactctgggaggaggagtccccgggattctgcaccgacgaggtgccgatgatccaccCggacgagatcatggtgccattgcgcgaccacccgccgccggtttgcatggccgccggtgcctcgacgccgacgacatcgtcgtcgtcgtcgtcctcgtcggtggcctcctcgacgacgagctgcgacgaggtcgacgccgcggcgctgctcccggtcctggagtggcccgacgacgccatgtgcctgatggagctcgacgagctgatcgccgcggcggcgccgccgtccctgctgtgggacgacgactaccgcctcccgctgccgccgccgccgccatcgccgccggcgatgtacgaggagctagacgcctttcagtgctacgaccagcagaggagcgcgtttgagcaggaggcagcagcttcagcgtggaacaagcttgagctcttctaatcaatcaaaattaaactctgtaaattatgtttacagtgtttattataatcaataattaccgaactaaaacagaacagtgtTgtttcattgttctagtattgcctctctggttaattgttccattggaattgcattagtgtagtgatgtgaaatgatcaatgttctcagttatatattgcagaattcgatcagttTatgtc
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| CDS seq | atggggaggcagccgtgctgcgacaaggtggggctgaagaaggggccatggacggcggaggaggaccagaagctcatcaccttcctcctcaccaacggccagctacggtggacgaactacctccggccggatctcaagagggggctgctctccgacgccgaggagaagatcgtcgtcgacctacatgcccaattgggcaataggtacgataacattgtcctcgacacgttgggacaacatgctgaacgtaggagatcatcaatggggaggcagccgtgctgcgacaaggtggggctgaagaaggggccatggacggcggaggaggaccagaagctcatcaccttcctcctcacCaacggccagctacggtggacgaactacctccggccggatctcaagagggggctgctctccgacgccgaggagaagatcgtcgtcgacctacatgcccaattgggcaataggtggtctaagattgcgtctcatttgcctgggaggacggacaacgagatcaagaaccactggaacactcacatcaagaagaagctcaagaaaatggggatcgatcccCtcacccacaggcccctccagccgccgccgtcgccgtcgccggagaagaagcacgcagagagaaagaacacggcggcggccgcggcggtggccgagcagcatcagcacgacgaactctgggaggaggagtccccgggattctgcaccgacgaggtgccgatgatccaccCggacgagatcatggtgccattgcgcgaccacccgccgccggtttgcatggccgccggtgcctcgacgccgacgacatcgtcgtcgtcgtcgtcctcgtcggtggcctcctcgacgacgagctgcgacgaggtcgacgccgcggcgctgctcccggtcctggagtggcccgacgacgccatgtgcctgatggagctcgacgagctgatcgccgcggcggcgccgccgtccctgctgtgggacgacgactaccgcctcccgctgccgccgccgccgccatcgccgccggcgatgtacgaggagctagacgcctttcagtgctacgaccagcagaggagcgcgtttgagcaggaggcagcagcttcagcgtggaacaagcttgagctcttctaa
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| Protein seq | MGRQPCCDKVGLKKGPWTAEEDQKLITFLLTNGQLRWTNYLRPDLKRGLLSDAEEKIVVDLHAQLGNRYDNIVLDTLGQHAERRRSSMGRQPCCDKVGLKKGPWTAEEDQKLITFLLTNGQLRWTNYLRPDLKRGLLSDAEEKIVVDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPLTHRPLQPPPSPSPEKKHAERKNTAAAAAVAEQHQHDELWEEESPGFCTDEVPMIHPDEIMVPLRDHPPPVCMAAGASTPTTSSSSSSSSVASSTTSCDEVDAAALLPVLEWPDDAMCLMELDELIAAAAPPSLLWDDDYRLPLPPPPPSPPAMYEELDAFQCYDQQRSAFEQEAAASAWNKLELF |
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| Function | Transcription factor MYB20 [UniProtKB/Swiss-Prot:Q9C7U7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0016910 | OsLiXu_08g0016910.01 | Chr08 | 22798907 | 22803233 | + | NAM | ||
| CDS seq | atggggaggcagccgtgctgcgacaaggtggggctgaagaaggggccatggacggcggaggaggaccagaagctcatcaccttcctcctcaccaacggccagctacggtggacgaactacctccggccggatctcaagagggggctgctctccgacgccgaggagaagatcgtcgtcgacctacatgcccaattgggcaataggtacgataacattgtcctcgacacgttgggacaacatgctgaacgtaggagatcatcaatggggaggcagccgtgctgcgacaaggtggggctgaagaaggggccatggacggcggaggaggaccagaagctcatcaccttcctcctcacCaacggccagctacggtggacgaactacctccggccggatctcaagagggggctgctctccgacgccgaggagaagatcgtcgtcgacctacatgcccaattgggcaataggtggtctaagattgcgtctcatttgcctgggaggacggacaacgagatcaagaaccactggaacactcacatcaagaagaagctcaagaaaatggggatcgatcccCtcacccacaggcccctccagccgccgccgtcgccgtcgccggagaagaagcacgcagagagaaagaacacggcggcggccgcggcggtggccgagcagcatcagcacgacgaactctgggaggaggagtccccgggattctgcaccgacgaggtgccgatgatccaccCggacgagatcatggtgccattgcgcgaccacccgccgccggtttgcatggccgccggtgcctcgacgccgacgacatcgtcgtcgtcgtcgtcctcgtcggtggcctcctcgacgacgagctgcgacgaggtcgacgccgcggcgctgctcccggtcctggagtggcccgacgacgccatgtgcctgatggagctcgacgagctgatcgccgcggcggcgccgccgtccctgctgtgggacgacgactaccgcctcccgctgccgccgccgccgccatcgccgccggcgatgtacgaggagctagacgcctttcagtgctacgaccagcagaggagcgcgtttgagcaggaggcagcagcttcagcgtggaacaagcttgagctcttctaa
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| Protein seq | MGRQPCCDKVGLKKGPWTAEEDQKLITFLLTNGQLRWTNYLRPDLKRGLLSDAEEKIVVDLHAQLGNRYDNIVLDTLGQHAERRRSSMGRQPCCDKVGLKKGPWTAEEDQKLITFLLTNGQLRWTNYLRPDLKRGLLSDAEEKIVVDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPLTHRPLQPPPSPSPEKKHAERKNTAAAAAVAEQHQHDELWEEESPGFCTDEVPMIHPDEIMVPLRDHPPPVCMAAGASTPTTSSSSSSSSVASSTTSCDEVDAAALLPVLEWPDDAMCLMELDELIAAAAPPSLLWDDDYRLPLPPPPPSPPAMYEELDAFQCYDQQRSAFEQEAAASAWNKLELF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0428200 | RBH | 0.0 | 0.161344 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g33150 | RBH | 0.372693 | 0.633553 | 0.069928 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0428200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0016770 | RBH | 0.0 | 0.0 | 0.951252 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0016640 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0016590 | RBH | 0.0 | 0.000000 | 2.738408 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0016930 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0016760 | RBH | 0.975616 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0329000 | RBH | 1.4769045 | 0.148857 | 0.575356 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0016660 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0350700 | RBH | 1.4665425 | 0.233385 | 0.280128 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0016020 | RBH | 0.183690 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0016300 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0016090 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0009480 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0016310 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G016440 | RBH | 0.0 | 0.0 | 0.326091 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0016570 | RBH | 0.0 | 0.0 | 0.0 |
