Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0016850 | OGI:08060630 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:22759430-22762307 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacgccgacatgctccggctgccgtccgtgctgccggagtcggcgttccggcacgcgtcctcgacgatgcgctcgatccgcgcctccacctcggccatggccggccgccggtcggggtggtgctcggtgcactccatgcccagctgcagcagccgcatcatctccccctcggtgcgcgcctcgttgccgatggcggcgtcgaacacctccgacgtccactcctcctgcaccaccgaccgcatccaccgcggcaggtcgacggcggcgccgccgtccggcgtcgcgtcgagcggcggccggccgctgagcagctcgagcagcagcacgccgaagctgtacacgtcggcgctctgcgacacgcgccgcgcgtcgaccacctccggcgcgcggtaccccgcgccccgcttcgtagtcggcggcgccgccgcgccgccgacgagctgggccaggccgtagtcggtgacgtaggcggcgtcccgtgtcgcggtgacgacgacgttggacgacttgatgtcgccgtgcgatgagattggccctccgcggtggatgaacgccacgccgcgcgccaccgccagcgcgatgcgcgcccgcgccgcgaagtccagcttctcgccgttgcctacataaacatcaatcaaatcttatatgaagttactattcaggaaacgtattgactccaactttaaacacaacttttggaaagtgtgacatgaaaaaaaatactccctccatcataaaatataataacttttagccttcagaatttattctaaaatatataacaacttttctaccaacattttcttcataaccctccaccattcatttttctcacctacctcaactactcatccaatcacaaccctccaccacttacttataactactttcttaataaccgtgtacaaccctaaaacttcttatattctggaacggagggagtaataaatactatgtgacggagcataaagacagcggccatatggatatttatcaacttcatgtgcagatttacaaatagacttgaataaatgtttgtctttattttgtgttagggttattagttattgtttactacttatttttctggtttatatatgctctctattgagtgaaataataagagcctttgaatcgcaggaatgaaaaaaaaAgaataggaaatgtgcatgattttaataggaaggtaaatacaaaacaaatgattgcaaaatataagaaaaatataggaataaccgtttgattggactcataaaaaatacaggaatgggatgagagatatagactcaaaaggaaaatttttaagaggttagagttcttactaaatttcctccaaaatccatataagattgtccattctatagaagtttcaaagaataacatagggttcaatcatttatttcaaataccttcatggaaattttttttataaaattaaaatcctccaaaatccttatgtttttccgccaaacccataatctctttataagcaaaagaccgtgtttctttcgctgcacgaagagaagtgagaaggcgaggtgatgtgatgaacgaaccgtggaggagggcggcgaggctgcctgcgccgacgacgaactcgtagacgaggagcttctcctccctgctgtagaagtaggcgaggaggcgcggcaggctgtcgtggcggacggcgccgatggccgcgacgcggtcccggaactcgcgctccgagaggctcacctcgcgcagccgcttcacggcgagcaccggctcgccgccgtcgagcgtcgcgcggtacgtcgtccccgccgcgcccttgccgaccacctcggccgacgcgcgcagcagcgtgtccaggtcgtacggccgctccggcgcgccgccgacgaacaccagcttggtgctgccttcgcccggcggcggcggcgagtgcgactgcttgacggcggcgtccatgtccgtcctcgccacggtcaccgtgatgggctccgccacgtcgtgggcggccgccgcggcggcggtgctccgactccgtggcgccgtcgcccggcgccggaagcacgccaagaaccccacggtgagcgcgacgacgagcgcggccacggcgccgaggacgatgccgatgatcgcgccacgggagagctttccgccgcccttgctgtccccgggcggcgacggcggcgtcggcgaggggttggcgcacggggcgagcggggcgccgcagagcgacgtgccgaggaaggcgctcgccggcatcccggcgagcgacgccggcacggcgccaccgatctggccattgtacgacacgttgaactgcgcgagcttcggcagcgtcaggttaccggggagcgtgccatcgaagccgttgcggtcgaggttcagcgtggtcaggctcgcgagccggctgaactccggcgagacgccgccggtgaggcggttcccggagaggtccaccttctcgagcagcgccagcgagaagagcccctccggcaacccgccggcgagccggttcccggagaggttcagcgaccggagctggacgcagccgccgatgtccgcggggatcccgccggatatcgcgttcatccggagcgacagcgtccgcagcgcggtgaggttgccgaccgtgcccacgggcaccgctcctctcaggctcttcccggggagccggagctcggtgacgcggtcgccggaggcggagcacccgacgccgcgccacgcgccgccgcacggcgtgggcgccgaggggtcccacggcaggtgccgcccccccaccgcgttccgcagcgccagcagcgccgcgcggtcgcccgccatgtcggccgccgccgcgcgcgcgacgagcaccagcagcagcagcagcagcaggacgtcgcggcgtcgcccggacgacgccat
More
|
||||||||||
| CDS seq | atggcgtcgtccgggcgacgccgcgacgtcctgctgctgctgctgctgctggtgctcgtcgcgcgcgcggcggcggccgacatggcgggcgaccgcgcggcgctgctggcgctgcggaacgcggtgggggggcggcacctgccgtgggacccctcggcgcccacgccgtgcggcggcgcgtggcgcggcgtcgggtgctccgcctccggcgaccgcgtcaccgagctccggctccccgggaagagcctgagaggagcggtgcccgtgggcacggtcggcaacctcaccgcgctgcggacgctgtcgctccggatgaacgcgatatccggcgggatccccgcggacatcggcggctgcgtccagctccggtcgctgaacctctccgggaaccggctcgccggcgggttgccggaggggctcttctcgctggcgctgctcgagaaggtggacctctccgggaaccgcctcaccggcggcgtctcgccggagttcagccggctcgcgagcctgaccacgctgaacctcgaccgcaacggcttcgatggcacgctccccggtaacctgacgctgccgaagctcgcgcagttcaacgtgtcgtacaatggccagatcggtggcgccgtgccggcgtcgctcgccgggatgccggcgagcgccttcctcggcacgtcgctctgcggcgccccgctcgccccgtgcgccaacccctcgccgacgccgccgtcgccgcccggggacagcaagggcggcggaaagctctcccgtggcgcgatcatcggcatcgtcctcggcgccgtggccgcgctcgtcgtcgcgctcaccgtggggttcttggcgtgcttccggcgccgggcgacggcgccacggagtcggagcaccgccgccgcggcggccgcccacgacgtggcggagcccatcacggtgaccgtggcgaggacggacatggacgccgccgtcaagcagtcgcactcgccgccgccgccgggcgaaggcagcaccaagctggtgttcgtcggcggcgcgccggagcggccgtacgacctggacacgctgctgcgcgcgtcggccgaggtggtcggcaagggcgcggcggggacgacgtaccgcgcgacgctcgacggcggcgagccggtgctcgccgtgaagcggctgcgcgaggtgagcctctcggagcgcgagttccgggaccgcgtcgcggccatcggcgccgtccgccacgacagcctgccgcgcctcctcgcctacttctacagcagggaggagaagctcctcgtctacgagttcgtcgtcggcgcaggcagcctcgccgccctcctccacggcaacggcgagaagctggacttcgcggcgcgggcgcgcatcgcgctggcggtggcgcgcggcgtggcgttcatccaccgcggagggccaatctcatcgcacggcgacatcaagtcgtccaacgtcgtcgtcaccgcgacacgggacgccgcctacgtcaccgactacggcctggcccagctcgtcggcggcgcggcggcgccgccgactacgaagcggggcgcggggtaccgcgcgccggaggtggtcgacgcgcggcgcgtgtcgcagagcgccgacgtgtacagcttcggcgtgctgctgctcgagctgctcagcggccggccgccgctcgacgcgacgccggacggcggcgccgccgtcgacctgccgcggtggatgcggtcggtggtgcaggaggagtggacgtcggaggtgttcgacgccgccatcggcaacgaggcgcgcaccgagggggagatgatgcggctgctgcagctgggcatggagtgcaccgagcaccaccccgaccggcggccggccatggccgaggtggaggcgcggatcgagcgcatcgtcgaggacgcgtgccggaacgccgactccggcagcacggacggcagccggagcatgtcggcgtga
More
|
||||||||||
| Protein seq | MASSGRRRDVLLLLLLLVLVARAAAADMAGDRAALLALRNAVGGRHLPWDPSAPTPCGGAWRGVGCSASGDRVTELRLPGKSLRGAVPVGTVGNLTALRTLSLRMNAISGGIPADIGGCVQLRSLNLSGNRLAGGLPEGLFSLALLEKVDLSGNRLTGGVSPEFSRLASLTTLNLDRNGFDGTLPGNLTLPKLAQFNVSYNGQIGGAVPASLAGMPASAFLGTSLCGAPLAPCANPSPTPPSPPGDSKGGGKLSRGAIIGIVLGAVAALVVALTVGFLACFRRRATAPRSRSTAAAAAAHDVAEPITVTVARTDMDAAVKQSHSPPPPGEGSTKLVFVGGAPERPYDLDTLLRASAEVVGKGAAGTTYRATLDGGEPVLAVKRLREVSLSEREFRDRVAAIGAVRHDSLPRLLAYFYSREEKLLVYEFVVGAGSLAALLHGNGEKLDFAARARIALAVARGVAFIHRGGPISSHGDIKSSNVVVTATRDAAYVTDYGLAQLVGGAAAPPTTKRGAGYRAPEVVDARRVSQSADVYSFGVLLLELLSGRPPLDATPDGGAAVDLPRWMRSVVQEEWTSEVFDAAIGNEARTEGEMMRLLQLGMECTEHHPDRRPAMAEVEARIERIVEDACRNADSGSTDGSRSMSA |
||||||||||
| Function | Probable inactive receptor kinase At1g48480 [UniProtKB/Swiss-Prot:Q9LP77] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0016850 | OsLiXu_08g0016850.01 | Chr08 | 22759430 | 22762307 | - | NAM | ||
| CDS seq | atggcgtcgtccgggcgacgccgcgacgtcctgctgctgctgctgctgctggtgctcgtcgcgcgcgcggcggcggccgacatggcgggcgaccgcgcggcgctgctggcgctgcggaacgcggtgggggggcggcacctgccgtgggacccctcggcgcccacgccgtgcggcggcgcgtggcgcggcgtcgggtgctccgcctccggcgaccgcgtcaccgagctccggctccccgggaagagcctgagaggagcggtgcccgtgggcacggtcggcaacctcaccgcgctgcggacgctgtcgctccggatgaacgcgatatccggcgggatccccgcggacatcggcggctgcgtccagctccggtcgctgaacctctccgggaaccggctcgccggcgggttgccggaggggctcttctcgctggcgctgctcgagaaggtggacctctccgggaaccgcctcaccggcggcgtctcgccggagttcagccggctcgcgagcctgaccacgctgaacctcgaccgcaacggcttcgatggcacgctccccggtaacctgacgctgccgaagctcgcgcagttcaacgtgtcgtacaatggccagatcggtggcgccgtgccggcgtcgctcgccgggatgccggcgagcgccttcctcggcacgtcgctctgcggcgccccgctcgccccgtgcgccaacccctcgccgacgccgccgtcgccgcccggggacagcaagggcggcggaaagctctcccgtggcgcgatcatcggcatcgtcctcggcgccgtggccgcgctcgtcgtcgcgctcaccgtggggttcttggcgtgcttccggcgccgggcgacggcgccacggagtcggagcaccgccgccgcggcggccgcccacgacgtggcggagcccatcacggtgaccgtggcgaggacggacatggacgccgccgtcaagcagtcgcactcgccgccgccgccgggcgaaggcagcaccaagctggtgttcgtcggcggcgcgccggagcggccgtacgacctggacacgctgctgcgcgcgtcggccgaggtggtcggcaagggcgcggcggggacgacgtaccgcgcgacgctcgacggcggcgagccggtgctcgccgtgaagcggctgcgcgaggtgagcctctcggagcgcgagttccgggaccgcgtcgcggccatcggcgccgtccgccacgacagcctgccgcgcctcctcgcctacttctacagcagggaggagaagctcctcgtctacgagttcgtcgtcggcgcaggcagcctcgccgccctcctccacggcaacggcgagaagctggacttcgcggcgcgggcgcgcatcgcgctggcggtggcgcgcggcgtggcgttcatccaccgcggagggccaatctcatcgcacggcgacatcaagtcgtccaacgtcgtcgtcaccgcgacacgggacgccgcctacgtcaccgactacggcctggcccagctcgtcggcggcgcggcggcgccgccgactacgaagcggggcgcggggtaccgcgcgccggaggtggtcgacgcgcggcgcgtgtcgcagagcgccgacgtgtacagcttcggcgtgctgctgctcgagctgctcagcggccggccgccgctcgacgcgacgccggacggcggcgccgccgtcgacctgccgcggtggatgcggtcggtggtgcaggaggagtggacgtcggaggtgttcgacgccgccatcggcaacgaggcgcgcaccgagggggagatgatgcggctgctgcagctgggcatggagtgcaccgagcaccaccccgaccggcggccggccatggccgaggtggaggcgcggatcgagcgcatcgtcgaggacgcgtgccggaacgccgactccggcagcacggacggcagccggagcatgtcggcgtga
More
|
|||||||
| Protein seq | MASSGRRRDVLLLLLLLVLVARAAAADMAGDRAALLALRNAVGGRHLPWDPSAPTPCGGAWRGVGCSASGDRVTELRLPGKSLRGAVPVGTVGNLTALRTLSLRMNAISGGIPADIGGCVQLRSLNLSGNRLAGGLPEGLFSLALLEKVDLSGNRLTGGVSPEFSRLASLTTLNLDRNGFDGTLPGNLTLPKLAQFNVSYNGQIGGAVPASLAGMPASAFLGTSLCGAPLAPCANPSPTPPSPPGDSKGGGKLSRGAIIGIVLGAVAALVVALTVGFLACFRRRATAPRSRSTAAAAAAHDVAEPITVTVARTDMDAAVKQSHSPPPPGEGSTKLVFVGGAPERPYDLDTLLRASAEVVGKGAAGTTYRATLDGGEPVLAVKRLREVSLSEREFRDRVAAIGAVRHDSLPRLLAYFYSREEKLLVYEFVVGAGSLAALLHGNGEKLDFAARARIALAVARGVAFIHRGGPISSHGDIKSSNVVVTATRDAAYVTDYGLAQLVGGAAAPPTTKRGAGYRAPEVVDARRVSQSADVYSFGVLLLELLSGRPPLDATPDGGAAVDLPRWMRSVVQEEWTSEVFDAAIGNEARTEGEMMRLLQLGMECTEHHPDRRPAMAEVEARIERIVEDACRNADSGSTDGSRSMSA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0427600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g33090 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0427600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0016720 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0016570 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0016540 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0016880 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0016700 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0328100 | RBH | 0.0232635 | 0.055432 | 0.019149 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0016600 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0349600 | RBH | 0.0088165 | 0.141892 | 0.516494 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0015960 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0016240 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0016030 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0009450 | RBH | 0.0 | 0.0 | 0.068240 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0016250 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G016380 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0016510 | RBH | 0.0 | 0.0 | 0.0 |
