Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0015470 | OGI:08056370 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:21402773-21407934 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggtgaatattagagcaggtataataagtccagctctgctggctaatagccaagccacgtcaaataagtcctacgtggatgagggagatgagatAagagagaggcaagtgagcgattgcacaagcgccagctgagcacaagcgcctaggtgaagaaagcaaacggctagttaacacGtgcctgccaagagataatttctgtgtatgagcctatcaaattagaattgtgggtccggtaaaagataaaatagcttttagagataatatgaggatattactaatatacgcactacatgtatatggttagctataaagcagagctggacttctttggtgccaacgataagctttctctattggcacatatcgtatgcacacaggccctcacgtgtacacacgtgcacaccaactaaaaaatgtcaccaaaaatctagaaaaaatcatatacatactttcaattgcacctagggtgccgtagacagttttaatgttgcaattttgtcagaattttatctttttgttattctctatgtagaatgaatttgaagatacgactttgcacgtagatgtaatactattgaaagtacatgtatgaattttcctagaatttttgtgataatttttagttggtgtacacggtgtgtacacgcgagggcctgtgtgtataggatacgctcccttctctattaaccttgctcttagcagatggattaatattttattagcaaagtgttaggattggacatttgcatgtagcggttaggttggagttagcttgtattaatattattttattattttatttcattcagttggaaagatgacgtcttaaaattatttatttagttagccatgttaggttgggttatatttagtctaattagtagggtgatcaatgcacttctggaaaaagatgcaaaaaccatctttgatcggtcgaccaaattccacaattaatagtcccgGttgcaataaaaccagactaaatataagattatctttagtcccgattcaaaagtttagagctactttttgatctttagtccatttggtaacaacaatcgggactaaagattatttttagtcccagttaaaaaaacggcaggcggtgtcagactcctctattatctttagtgacggttggtgttaccaaccgggaaaaatgatcggcatacgtggagagggcgaggcgtgcgcgcgagatcgaggaggaggaggcgcacaggatcagttaataagttctatctcctcctccctttatctcttcctcattcacccccatctctTcctcttctcctcctcctctcctctaactacaaatgtctaggcctaatggtacacccataaatgtttctaaatcgatcaccacgtgtcactctaataaattgaaaaaatctataagtgtgacaaatgaaaacaaaatatcaaccatcggtttccacttgaaccaatggatccactatcttatatagttagatctatctttaaacgaaaatccaaaaactccctccctcccgtttctCccgttcctctttccctaccattcattctctgttctttatctccatagcaactaaatccaaaattatatttaagagaaaaaacacctacaaatagactccgcctaacaaatctagcaaccttttactctgttatgtgattctcttctctttcttttcaagctagcacttatagaaacaacataaattagactttaaaataatcataaatttttaaatcttatattcaattgatgacatttctaaactattacaattttcaattaaatcaataattcagtacattgtggaccacatctatctaccttgaagcctccaataaataaaataaaatactaaaatttctaattaaaaaataaaaaatcccaccttatgttttaataaacagtaaacctattatttataccatgctaaatatctaatgacttcttccaactccttctatttcagattacaagtcattttaaattttgtctatgtcaagttacttgaattagtttataaaaacatagtaacattttcaacacaaaacaattatattataaaaaacatattcaattctgaattcaataaaaataatttggtgatgtaaatattgatatactttcctcaacaatggaagtagttaatttctcttatacttcatcctagatgcgcttttatgaataaatgatcttttagagataaataaatgttcctaagatgatcataacatctaaattatacctatgatatctgatgtcactaatggattagagaaaaagcttttaattatatcatttttttatgtcataacgtgtaccctgtctaggatctatttgttatagacaatagattgaaaacaattaagcgataactttatcccatgccaagttgtatggccttaacccacttatatttctataccaaattgcagagacaaaacatttaagggatgcttgatgaaatagaaatctagaaaaaaaaataacatgataaaaataattgaagactgaactttgttttctaaatttaagattttttttaatctaaaacccattctaaatagcaatgttcaaatatttaggagtactgatacaatgaaaataattaaaattctaaataaaatataatataaaattgacattttgggcattatgtggaaataaaatctaacataatatcagttcgaagtatacaaccctaaactataacttgagaacgataaaagtctcattttctaatatattttctgtttctgatttagaaaaacttttactgctaaaccataaattcatactgcaatactatatacttacaattaaatcaatttcaacatattcagttcatttagttagatgatgtagtcgtattagccatattttaatagaaagtatcttcaataatatatcctaaaattcataaaacacatatatagtatacaaaagaaaaattgttactcatagtttagaatgtgcaaaaataagatatgctaaatattaaaaaaagaagtgcattttgtagaagtgatatatagtttcacatatatatttttcttataaacctaatttgcatggttttaaataattttagtttagaatttatacaccagcgatggttactaacattcagagaaacaccacacaaattattgaaaaattaaacatgtttaaaatagagtaatcataaacattcctaatcaaatttctagcacagtaaataagatgcccgcgcatacgcgggctatctttctagttttagaattattcgtaatcaaaattcaaataagtttaacatagtctcgtccaaaataacaactatttttcaacacggagagagtacactgttaaatctttaaggaaaagtctagctaaacttctggcttaacatcgttagctgcagtcttagctattctaattctaatggtagtagcagtttgacacatcaaaccttttatgtagcaacaaactctcgagtgtgacatccccgcaatgctcgaacacattcgagatccatggaaattctgaatcgatcaagcaactccatctcctagctaggcctaccatccaccaaaccgatcgacctccctctccgatcatatcccttttcatggcttttcatgcagctcttttgagtcgatcatatcagtgctctcttgacagcttgcacacagttaagcaccagctgttggcaactgcaccatgcatggatcgatgctaggctcgatcgaaaatccgttttactttaataggcatccggcgatcgatggagacgagtggtggagaaaatggcggatgacatggacagctgctgagggcctctcctattcctacgacgacgccagggccagccctccaccgtcgcctccgacctcgcgacctggcgagccagagagccccgtcgccgctgccgccgcggctgccgccatgacctccaccaccaccaccaacaacccaccaccaccaccaccaacaacaacaacaaccccgtctccaccaccaccaccaccactgcctcccaccaacgccagagccttcccgtcgccgcccgtcctccgcactccagcggcagcggcagcggcagcggcggctcgcatcgcggcgccagcggcggagggagcggaggaggtggtggtggtggaggtggtggtggaggtggagggggagggacgaatcaggcatgcgcggcgtgcaagtaccagcggcgcaagtgcaacccggactgcccgatggcgccctacttccccgccgaccagcagcgccgcttcctcaacgcgcaccgcctcttcggcgtcagcaacatcctcaagacgctccgccacctcaagcccgagctgtgcgacgacgccatgcgcacgctcatctaccaggccgagatgcgggcccacgaccccgtcggcgggtgttgccgcgtcatctgcgatctcgagcgccagctcgagctcgacacggccgaactcaacaccgtactccaccatctggcgatgtgtcgtcaggcggctgccgctggcgcgtccggtagcgtcgccgccacgctgccggcaggcgtgttggacgacgcgtgcgccgatctcgatgtcacctcgtcaaaccagcctctcctactcagtgcggagcatgaggtcgttgatgcgctctatgccaatcaagaagccgatgctgcgatcctacacgccgacggccatcataatcaggacgagagtcagcgtgaacaccatcacggtcaaccacagcagctttacgattacttctactacgactcgaccgccggtgacgacgtcagtagcaagccgaatctcgacatcaatgtcgatggaatgcagcattttgatttcgacaccaactatgatgctgaacacaaggttgagctcacatccgatcaccaaatgccggtagggtggatgagcacaaccagattgatgataaggggttcgagataaagtcgggaccgtcactcgtcgatgtgttcgaccttcggcaggaggaggagcaagtgcagacggtggacgtgaacacggacatcgaggtcaaggaaatggtggatatgaacgccgacatcgatgtcaagacaatggtggacgagaacagcaacatcgacattatcaagacaatggtggacgtgaacgccgacatcgtcgacgttgtcaagacggtggggacgtga
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| CDS seq | atggtgaatattagagcaggtataataagtccagctctgctggctaatagccaagccacgtcaaataagtcctacgtggatgagggagatgagatAagagagaggcaaggccagccctccaccgtcgcctccgacctcgcgacctggcgagccagagagccccgtcgccgctgccgccgcggctgccgccatgacctccaccaccaccaccaacaacccaccaccaccaccaccaacaacaacaacaaccccgtctccaccaccaccaccaccactgcctcccaccaacgccagagccttcccgtcgccgcccgtcctccgcactccagcggcagcggcagcggcagcggcggctcgcatcgcggcgccagcggcggagggagcggaggaggtggtggtggtggaggtggtggtggaggtggagggggagggacgaatcaggcatgcgcggcgtgcaagtaccagcggcgcaagtgcaacccggactgcccgatggcgccctacttccccgccgaccagcagcgccgcttcctcaacgcgcaccgcctcttcggcgtcagcaacatcctcaagacgctccgccacctcaagcccgagctgtgcgacgacgccatgcgcacgctcatctaccaggccgagatgcgggcccacgaccccgtcggcgggtgttgccgcgtcatctgcgatctcgagcgccagctcgagctcgacacggccgaactcaacaccgtactccaccatctggcgatgtgtcgtcaggcggctgccgctggcgcgtccggtagcgtcgccgccacgctgccggcaggcgtgttggacgacgcgtgcgccgatctcgatgtcacctcgtcaaaccagcctctcctactcagtgcggagcatgaggtcgttgatgcgctctatgccaatcaagaagccgatgctgcgatcctacacgccgacggccatcataatcaggacgagagtcagcgtgaacaccatcacggtcaaccacagcagctttacgattacttctactacgactcgaccgccggtgacgacgtcagtagcaagccgaatctcgacatcaatgtcgatggaatgcagcattttgatttcgacaccaactatgatgctgaacacaaggttgagctcacatccgatcaccaaatgccggaggaggagcaagtgcagacggtggacgtgaacacggacatcgaggtcaaggaaatggtggatatgaacgccgacatcgatgtcaagacaatggtggacgagaacagcaacatcgacattatcaagacaatggtggacgtgaacgccgacatcgtcgacgttgtcaagacggtggggacgtga
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| Protein seq | MVNIRAGIISPALLANSQATSNKSYVDEGDEIRERQGQPSTVASDLATWRAREPRRRCRRGCRHDLHHHHQQPTTTTTNNNNNPVSTTTTTTASHQRQSLPVAARPPHSSGSGSGSGGSHRGASGGGSGGGGGGGGGGGGGGGGTNQACAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTLIYQAEMRAHDPVGGCCRVICDLERQLELDTAELNTVLHHLAMCRQAAAAGASGSVAATLPAGVLDDACADLDVTSSNQPLLLSAEHEVVDALYANQEADAAILHADGHHNQDESQREHHHGQPQQLYDYFYYDSTAGDDVSSKPNLDINVDGMQHFDFDTNYDAEHKVELTSDHQMPEEEQVQTVDVNTDIEVKEMVDMNADIDVKTMVDENSNIDIIKTMVDVNADIVDVVKTVGT |
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| Function | LOB domain-containing protein 22 [UniProtKB/Swiss-Prot:Q9LRW1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0015470 | OsLiXu_08g0015470.01 | Chr08 | 21402773 | 21407934 | + | NAM | ||
| CDS seq | atggtgaatattagagcaggtataataagtccagctctgctggctaatagccaagccacgtcaaataagtcctacgtggatgagggagatgagatAagagagaggcaaggccagccctccaccgtcgcctccgacctcgcgacctggcgagccagagagccccgtcgccgctgccgccgcggctgccgccatgacctccaccaccaccaccaacaacccaccaccaccaccaccaacaacaacaacaaccccgtctccaccaccaccaccaccactgcctcccaccaacgccagagccttcccgtcgccgcccgtcctccgcactccagcggcagcggcagcggcagcggcggctcgcatcgcggcgccagcggcggagggagcggaggaggtggtggtggtggaggtggtggtggaggtggagggggagggacgaatcaggcatgcgcggcgtgcaagtaccagcggcgcaagtgcaacccggactgcccgatggcgccctacttccccgccgaccagcagcgccgcttcctcaacgcgcaccgcctcttcggcgtcagcaacatcctcaagacgctccgccacctcaagcccgagctgtgcgacgacgccatgcgcacgctcatctaccaggccgagatgcgggcccacgaccccgtcggcgggtgttgccgcgtcatctgcgatctcgagcgccagctcgagctcgacacggccgaactcaacaccgtactccaccatctggcgatgtgtcgtcaggcggctgccgctggcgcgtccggtagcgtcgccgccacgctgccggcaggcgtgttggacgacgcgtgcgccgatctcgatgtcacctcgtcaaaccagcctctcctactcagtgcggagcatgaggtcgttgatgcgctctatgccaatcaagaagccgatgctgcgatcctacacgccgacggccatcataatcaggacgagagtcagcgtgaacaccatcacggtcaaccacagcagctttacgattacttctactacgactcgaccgccggtgacgacgtcagtagcaagccgaatctcgacatcaatgtcgatggaatgcagcattttgatttcgacaccaactatgatgctgaacacaaggttgagctcacatccgatcaccaaatgccggaggaggagcaagtgcagacggtggacgtgaacacggacatcgaggtcaaggaaatggtggatatgaacgccgacatcgatgtcaagacaatggtggacgagaacagcaacatcgacattatcaagacaatggtggacgtgaacgccgacatcgtcgacgttgtcaagacggtggggacgtga
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| Protein seq | MVNIRAGIISPALLANSQATSNKSYVDEGDEIRERQGQPSTVASDLATWRAREPRRRCRRGCRHDLHHHHQQPTTTTTNNNNNPVSTTTTTTASHQRQSLPVAARPPHSSGSGSGSGGSHRGASGGGSGGGGGGGGGGGGGGGGTNQACAACKYQRRKCNPDCPMAPYFPADQQRRFLNAHRLFGVSNILKTLRHLKPELCDDAMRTLIYQAEMRAHDPVGGCCRVICDLERQLELDTAELNTVLHHLAMCRQAAAAGASGSVAATLPAGVLDDACADLDVTSSNQPLLLSAEHEVVDALYANQEADAAILHADGHHNQDESQREHHHGQPQQLYDYFYYDSTAGDDVSSKPNLDINVDGMQHFDFDTNYDAEHKVELTSDHQMPEEEQVQTVDVNTDIEVKEMVDMNADIDVKTMVDENSNIDIIKTMVDVNADIVDVVKTVGT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0402100 | RBH | 0.0 | 0.0 | 3.903607 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31080 | RBH | 0.0 | 0.0 | 0.947443 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0402100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0015330 | RBH | 0.0 | 0.0 | 2.375997 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015200 | RBH | 0.0 | 0.0 | 3.628573 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0015130 | RBH | 0.0 | 0.0 | 5.775910 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0015430 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015230 | RBH | 0.0 | 0.0 | 18.669697 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0303700 | RBH | 0.0205155 | 0.0082005 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0015260 | RBH | 0.0 | 0.0 | 5.371036 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0325800 | RBH | 0.009251 | 0 | 0.0059555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0014730 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0014850 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0014780 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0044100 | RBH | 0.0 | 0.0 | 0.565166 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0014890 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G014970 | RBH | 0.0 | 0.0 | 2.752803 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0015120 | RBH | 0.0 | 0.0 | 16.609737 |
