Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0015200 | OGI:08055630 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:21143903-21144653 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatgctggtgagaattgtcctcctatcaggccttttggacgttcgcacaaaagcctgatgctggaaccggtacccaaaatcatcataaagttttttggcaagggtagtcttaccaactcctccaggtcctacaatgagcacgaccgtccagctggtgggctgatcccctaatccggtggtcaaccattcttcaatcttttccacggtattttcatcgtcgataccaaaaagcgtacggctcgcaccatctggtttgaattgtaagtccatatgttcatcgggcacgtaccgaggtcccatagatctattattaagaccgtaactcgtgtatccttcgatcgcttccttcgcgcgagacctgaatcttgatatatcatcgatgatccgtcgtcgtcgaaccttttctcgatgaagcctggttatcttaccaggcaaggacgatgacgatggggcagcactgggtggtgtagtcttggtggtaataagctcgttgatgaagtcctggacgtcgtaggacagctcgcgcacctccttcatccatgactgggcagtggatgcagggtgctcgacatccgatggttccagtaccaaggccttaagctcatccatgtcgcctttgaggaggccgatcttcgttctcgcctgctctggtagcccatggcggtgctcgggatcctgcagcagcgactcgagcatcgtcggaatggacataatgacacccttcgaagcacttactaccagcgcctccat
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| CDS seq | atggaggcgctggtagtaagtgcttcgaagggtgtcattatgtccattccgacgatgctcgagtcgctgctgcaggatcccgagcaccgccatgggctaccagagcaggcgagaacgaagatcggcctcctcaaaggcgacatggatgagcttaaggccttggtactggaaccatcggatgtcgagcaccctgcatccactgcccagtcatggatgaaggaggtgcgcgagctgtcctacgacgtccaggacttcatcaacgagcttattaccaccaagactacaccacccagtgctgccccatcgtcatcgtccttgcctggtaagataaccaggcttcatcgagaaaaggttcgacgacgacggatcatcgatgatatatcaagattcaggtctcgcgcgaaggaagcgatcgaaggatacacgagttacggtcttaataatagatctatgggacctcggtacgtgcccgatgaacatatggacttacaattcaaaccagatggtgcgagccgtacgctttttggtatcgacgatgaaaataccgtggaaaagattgaagaatggttgaccaccggattaggggatcagcccaccagctggacggtcgtgctcattgtaggacctggaggagttggcctgataggaggacaattctcaccagcatga
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| Protein seq | MEALVVSASKGVIMSIPTMLESLLQDPEHRHGLPEQARTKIGLLKGDMDELKALVLEPSDVEHPASTAQSWMKEVRELSYDVQDFINELITTKTTPPSAAPSSSSLPGKITRLHREKVRRRRIIDDISRFRSRAKEAIEGYTSYGLNNRSMGPRYVPDEHMDLQFKPDGASRTLFGIDDENTVEKIEEWLTTGLGDQPTSWTVVLIVGPGGVGLIGGQFSPA |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0015200 | OsLiXu_08g0015200.01 | Chr08 | 21143903 | 21144653 | - | NAM | ||
| CDS seq | atggaggcgctggtagtaagtgcttcgaagggtgtcattatgtccattccgacgatgctcgagtcgctgctgcaggatcccgagcaccgccatgggctaccagagcaggcgagaacgaagatcggcctcctcaaaggcgacatggatgagcttaaggccttggtactggaaccatcggatgtcgagcaccctgcatccactgcccagtcatggatgaaggaggtgcgcgagctgtcctacgacgtccaggacttcatcaacgagcttattaccaccaagactacaccacccagtgctgccccatcgtcatcgtccttgcctggtaagataaccaggcttcatcgagaaaaggttcgacgacgacggatcatcgatgatatatcaagattcaggtctcgcgcgaaggaagcgatcgaaggatacacgagttacggtcttaataatagatctatgggacctcggtacgtgcccgatgaacatatggacttacaattcaaaccagatggtgcgagccgtacgctttttggtatcgacgatgaaaataccgtggaaaagattgaagaatggttgaccaccggattaggggatcagcccaccagctggacggtcgtgctcattgtaggacctggaggagttggcctgataggaggacaattctcaccagcatga
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| Protein seq | MEALVVSASKGVIMSIPTMLESLLQDPEHRHGLPEQARTKIGLLKGDMDELKALVLEPSDVEHPASTAQSWMKEVRELSYDVQDFINELITTKTTPPSAAPSSSSLPGKITRLHREKVRRRRIIDDISRFRSRAKEAIEGYTSYGLNNRSMGPRYVPDEHMDLQFKPDGASRTLFGIDDENTVEKIEEWLTTGLGDQPTSWTVVLIVGPGGVGLIGGQFSPA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0373000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0373000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005150 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0014930 | RBH | 0.0 | 0.0 | 12.158770 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0300000 | SBH | 1.532265 | 0.212281 | 10.199985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0014950 | RBH | 0.272230 | 0.042910 | 0.788901 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0014490 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0014580 | RBH | 0.131983 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0014500 | RBH | 2.742048 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0045340 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0014600 | RBH | 0.339700 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0014840 | RBH | 0.0 | 0.0 | 0.0 |
