Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0013400 | OGI:08046910 | 15/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:18083670-18085586 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcaaggaaagaataagtttttttttttTcattttaacctactttgtagtacgtcttgttccttagtacaatatatacatcacttgcaagaggttggttttcccataggccttaatttggcaaactatggcaagttgtgattggcaaagccctaagttaaattattttgctctacaatgaaagaggcatgttgtacaataggctgcttgctatgcacatggaccactgtctctgccaatagacccgcatcatccttttttgtaactcagaacggagtaaaccgcctggatgacggtgcagacgaagatgacggccgcctccccgaggccggcggcgagccacgggttggcgaagtacttctgcttcagccacgccatccaccgccgcggccggctctggaaccgccggtcgagcacctggcacaccggcctcaggtagttctggtcggcgtcgtccacgtcgaacacggtgcccttgcagagatcggcgaagcgcttggcgacctcgccgttgttgccgaggccgtgcacgatcacgccccgccgcgacagcagctccacgtccatcggcgtcgacgccagctgcgacatgaacacgcagtacgccgtcacgtggctccccgcccccgacgggttgctctgctccagcgctatcaggttgcggagcagccgccacgtctcgccgtcgatgttcagctgcggcacctccagcgtgccgccgccgccgccgctcaccttcacgtcgaggatgctgagggcgccgcccttgctgcggcgattgagaggccgtctcttgaacttcacgccgacgaagtagtactccatcgccgtgcgccatcggcccacgggcgcaccgccgccaccgacagcggcggcggatgtgagtacggtgggcgtgaagtgcatgtgcagcaggtgcagaagattggccggctccggccgccgttccggcggccccaccatggtcggcgtcgcgacggagtactgcttctgctccaagagttttccggcgaacctcgcgatggcgtccagcgccggagtaccgtggtccagaaacgtcatctggcggaccctctcgacgacgaagaacggaacctggttcgccgcaaggtagaacacgtcgcggaccacgtcgaggatatactgccggtcggcggcggatgctctcctcctctccaccgacggcacgacgcggttcccgccctgcacggcgccgttcgcgctcgccacggccgccggcgccgccgggcgtgggcggcgcccgacgacgtcgtcgacgtcgccgaagcggacgaggatgtagcatgcgtcgagcagcagccagcgcaggaactccttgctcggcaccacaccgaacgtgtggcggtagctgctcctcgcgcgggcctcgaggagctcgagctcggcgacgaagtccttcagctgcagcggcggcgcggtggagtacgccgccgccgcggcgaggacctcctgaagcgtgcgcagcttgtcgtcgtcgtccccggcgaggtcggcgttcctcatacggctgtacggcccgatgtagacgtggtgcggcaggtactcgtgcgggtcgacgttgcgattccgttcgccgacctcgtcgatgatgatcggcggcgtcggagaagggtcgccgtcgccggccaactccgtcgacggtggcttcaggctagtgagttcagtactcagttcttgcgccagtattgaagggacgtcaatgacatgttcatctgcatcgaagcaacaatcaaattctcatcaagttaatagtcatctaaattgctgagtgatccaagaagaattaataatcttgctcacaccttgcatctccatatgtgcagcacaagattttttttcttctggtgttctgaagtatacagccgcaagaagctgagcagcgttcccctgttaccacc
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| CDS seq | atggagatgcaagatgaacatgtcattgacgtcccttcaatactggcgcaagaactgagtactgaactcactagcctgaagccaccgtcgacggagttggccggcgacggcgacccttctccgacgccgccgatcatcatcgacgaggtcggcgaacggaatcgcaacgtcgacccgcacgagtacctgccgcaccacgtctacatcgggccgtacagccgtatgaggaacgccgacctcgccggggacgacgacgacaagctgcgcacgcttcaggaggtcctcgccgcggcggcggcgtactccaccgcgccgccgctgcagctgaaggacttcgtcgccgagctcgagctcctcgaggcccgcgcgaggagcagctaccgccacacgttcggtgtggtgccgagcaaggagttcctgcgctggctgctgctcgacgcatgctacatcctcgtccgcttcggcgacgtcgacgacgtcgtcgggcgccgcccacgcccggcggcgccggcggccgtggcgagcgcgaacggcgccgtgcagggcgggaaccgcgtcgtgccgtcggtggagaggaggagagcatccgccgccgaccggcagtatatcctcgacgtggtccgcgacgtgttctaccttgcggcgaaccaggttccgttcttcgtcgtcgagagggtccgccagatgacgtttctggaccacggtactccggcgctggacgccatcgcgaggttcgccggaaaactcttggagcagaagcagtactccgtcgcgacgccgaccatggtggggccgccggaacggcggccggagccggccaatcttctgcacctgctgcacatgcacttcacgcccaccgtactcacatccgccgccgctgtcggtggcggcggtgcgcccgtgggccgatggcgcacggcgatggagtactacttcgtcggcgtgaagttcaagagacggcctctcaatcgccgcagcaagggcggcgccctcagcatcctcgacgtgaaggtgagcggcggcggcggcggcacgctggaggtgccgcagctgaacatcgacggcgagacgtggcggctgctccgcaacctgatagcgctggagcagagcaacccgtcgggggcggggagccacgtgacggcgtactgcgtgttcatgtcgcagctggcgtcgacgccgatggacgtggagctgctgtcgcggcggggcgtgatcgtgcacggcctcggcaacaacggcgaggtcgccaagcgcttcgccgatctctgcaagggcaccgtgttcgacgtggacgacgccgaccagaactacctgaggccggtgtgccaggtgctcgaccggcggttccagagccggccgcggcggtggatggcgtggctgaagcagaagtacttcgccaacccgtggctcgccgccggcctcggggaggcggccgtcatcttcgtctgcaccgtcatccaggcggtttactccgttctgagttacaaaaaaggatga
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| Protein seq | MEMQDEHVIDVPSILAQELSTELTSLKPPSTELAGDGDPSPTPPIIIDEVGERNRNVDPHEYLPHHVYIGPYSRMRNADLAGDDDDKLRTLQEVLAAAAAYSTAPPLQLKDFVAELELLEARARSSYRHTFGVVPSKEFLRWLLLDACYILVRFGDVDDVVGRRPRPAAPAAVASANGAVQGGNRVVPSVERRRASAADRQYILDVVRDVFYLAANQVPFFVVERVRQMTFLDHGTPALDAIARFAGKLLEQKQYSVATPTMVGPPERRPEPANLLHLLHMHFTPTVLTSAAAVGGGGAPVGRWRTAMEYYFVGVKFKRRPLNRRSKGGALSILDVKVSGGGGGTLEVPQLNIDGETWRLLRNLIALEQSNPSGAGSHVTAYCVFMSQLASTPMDVELLSRRGVIVHGLGNNGEVAKRFADLCKGTVFDVDDADQNYLRPVCQVLDRRFQSRPRRWMAWLKQKYFANPWLAAGLGEAAVIFVCTVIQAVYSVLSYKKG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0013400 | OsLiXu_08g0013400.01 | Chr08 | 18083670 | 18085586 | - | NAM | ||
| CDS seq | atggagatgcaagatgaacatgtcattgacgtcccttcaatactggcgcaagaactgagtactgaactcactagcctgaagccaccgtcgacggagttggccggcgacggcgacccttctccgacgccgccgatcatcatcgacgaggtcggcgaacggaatcgcaacgtcgacccgcacgagtacctgccgcaccacgtctacatcgggccgtacagccgtatgaggaacgccgacctcgccggggacgacgacgacaagctgcgcacgcttcaggaggtcctcgccgcggcggcggcgtactccaccgcgccgccgctgcagctgaaggacttcgtcgccgagctcgagctcctcgaggcccgcgcgaggagcagctaccgccacacgttcggtgtggtgccgagcaaggagttcctgcgctggctgctgctcgacgcatgctacatcctcgtccgcttcggcgacgtcgacgacgtcgtcgggcgccgcccacgcccggcggcgccggcggccgtggcgagcgcgaacggcgccgtgcagggcgggaaccgcgtcgtgccgtcggtggagaggaggagagcatccgccgccgaccggcagtatatcctcgacgtggtccgcgacgtgttctaccttgcggcgaaccaggttccgttcttcgtcgtcgagagggtccgccagatgacgtttctggaccacggtactccggcgctggacgccatcgcgaggttcgccggaaaactcttggagcagaagcagtactccgtcgcgacgccgaccatggtggggccgccggaacggcggccggagccggccaatcttctgcacctgctgcacatgcacttcacgcccaccgtactcacatccgccgccgctgtcggtggcggcggtgcgcccgtgggccgatggcgcacggcgatggagtactacttcgtcggcgtgaagttcaagagacggcctctcaatcgccgcagcaagggcggcgccctcagcatcctcgacgtgaaggtgagcggcggcggcggcggcacgctggaggtgccgcagctgaacatcgacggcgagacgtggcggctgctccgcaacctgatagcgctggagcagagcaacccgtcgggggcggggagccacgtgacggcgtactgcgtgttcatgtcgcagctggcgtcgacgccgatggacgtggagctgctgtcgcggcggggcgtgatcgtgcacggcctcggcaacaacggcgaggtcgccaagcgcttcgccgatctctgcaagggcaccgtgttcgacgtggacgacgccgaccagaactacctgaggccggtgtgccaggtgctcgaccggcggttccagagccggccgcggcggtggatggcgtggctgaagcagaagtacttcgccaacccgtggctcgccgccggcctcggggaggcggccgtcatcttcgtctgcaccgtcatccaggcggtttactccgttctgagttacaaaaaaggatga
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| Protein seq | MEMQDEHVIDVPSILAQELSTELTSLKPPSTELAGDGDPSPTPPIIIDEVGERNRNVDPHEYLPHHVYIGPYSRMRNADLAGDDDDKLRTLQEVLAAAAAYSTAPPLQLKDFVAELELLEARARSSYRHTFGVVPSKEFLRWLLLDACYILVRFGDVDDVVGRRPRPAAPAAVASANGAVQGGNRVVPSVERRRASAADRQYILDVVRDVFYLAANQVPFFVVERVRQMTFLDHGTPALDAIARFAGKLLEQKQYSVATPTMVGPPERRPEPANLLHLLHMHFTPTVLTSAAAVGGGGAPVGRWRTAMEYYFVGVKFKRRPLNRRSKGGALSILDVKVSGGGGGTLEVPQLNIDGETWRLLRNLIALEQSNPSGAGSHVTAYCVFMSQLASTPMDVELLSRRGVIVHGLGNNGEVAKRFADLCKGTVFDVDDADQNYLRPVCQVLDRRFQSRPRRWMAWLKQKYFANPWLAAGLGEAAVIFVCTVIQAVYSVLSYKKG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.488052 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0356800 | RBH | 0.0 | 0.274234 | 0.652496 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g26850 | RBH | 0.0 | 0.184344 | 0.167873 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0356800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0013110 | RBH | 0.0 | 0.0 | 0.676813 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0013130 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0012980 | RBH | 0.230379 | 0.0 | 0.984283 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0013280 | RBH | 0.041777 | 0.034556 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0012930 | RBH | 0.0 | 3.757449 | 1.222274 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0249500 | SBH | 0.0470635 | 4.587939 | 0.030623 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0013020 | RBH | 0.106442 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0273100 | SBH | 5.1434495 | 14.7673415 | 0.547339 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0012610 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0012710 | RBH | 0.000000 | 1.648136 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0012590 | RBH | 0.791557 | 3.461692 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0044220 | RBH | 0.219828 | 0.0 | 0.353641 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0012710 | RBH | 0.130460 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G012800 | RBH | 0.171724 | 0.0 | 0.379648 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0012890 | RBH | 0.756101 | 0.0 | 0.839929 |
