Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0013390 | OGI:08046880 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:18069618-18071572 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagctccctggttttgtgtaaccgagaacagagtagaccgcctggatgacggtgcagacgaggccaacggtggcggccacgaggccggcgatgagccacgggttggcgaagtacttcttcttcagccacgccatccaccgccgcggccggctctggaaccgccgctcgagcacctggcacaccggcctcaggtagttcatgtcggcgtcgtccgcgtcgaacaccgccccCttgcacaggtccgcgaagtgcttggccacctcgccgtggtgccccagcccgtgcacgatcacgccccgccgcgacagcagctccacgtccgccgccgtgcacgccagctgcgacatgaacacgcagtacgccgtcacgtggctccccgccgccgccgggttcgactgctccagcgccatcaggttgcggagcagcggccacgtctccgcgtccacggtcagctgcggcatctccagcgtcccgccgccgcacccgctcaccttcacgtcgaggacgcaccgcgcgccgccgcgccgatcgaggggccgcttcttgaacgttacgccggcgaagtagtactccatcgccgtgcgccaccgccccacgggcctaccgccgccgcggcggcggctaccggtggtggcggcggacgtcagtactgtaggcgtgaagtgcatgtgcagcaggtggaggaggttggctggctccggcggccgctccggctcctccaccttggtcggcgtcgcgacggagtacccgttcacccgcaggagctcgtgcgcgtacctcgcgatggcgtgcaccgccggagtctggccgtcgaggaacgtcagctggtggatcttgtcgacgacgaagaagggaatctggttctccgcgaggtagaacacgtcgcggaccaccgccacggcctcctgctggtcgacggcggattcttcttccctctcctccaccgacggcacgacgcggttagcctctgccgccacgggcgccttgctgcggcgcccgacgacgacgtcgcggaggcggacgagcacgtagcacgcgtcgagcagccgccggcgcaggaaccccttgcagctcgggacatgaaaccatctcctcacgcggcggagcacgatgccatccgccgtggtctcctcctcctcctccacctcctcgtcctcaggtcggcgcctcatcacgacgtcgccgaagcggacgaggatgtagcagccgtcgagcagcagccagcgcaggaaatccttgctctggacgtgatcgaacgacagcttgtagcatttccgcgcgcgagcctccatgcgcgcgagctcggtgatgaagtcctccagctgcagcggcgcggtggtgtgcgccgccgccgccgacaggacctcctggagcctacccaccttgtcggagtccctggcgagcttggacttgcagtcgcagctgcggttgtacggcccgatggagacgaagtgcggctcgtactcctgcttgtcgacgttgcgggtgagctcggcgaccttgtcgatcatgatcgacggcggagatgactcgccgccggcccgccccgtcgtcggcgagttcaggcttgcgagttcatgcttcagttcttgcgccagtagtgaggccatctcaatgacatgttgatctgtaatccaatatcacaaaatcgtcaggtgttagctagatgcatgattattagacatatccaaattgttgagctgatccaagaaagagtcttgttgacacctagcctctccatctatgcagcagcaggacaagtaggattgcctccctctccctttcttcctttcttgactctgctgcagcctgcaggtcttcagcatatacacctgcaggaaaacagagcagctgccctagcactccatggatggcaaagaatatatatatagggagtttaaagaacagtactttactacgagttggtagctgcataaaattcaccaaattaatt
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| CDS seq | atggagaggctagatcaacatgtcattgagatggcctcactactggcgcaagaactgaagcatgaactcgcaagcctgaactcgccgacgacggggcgggccggcggcgagtcatctccgccgtcgatcatgatcgacaaggtcgccgagctcacccgcaacgtcgacaagcaggagtacgagccgcacttcgtctccatcgggccgtacaaccgcagctgcgactgcaagtccaagctcgccagggactccgacaaggtgggtaggctccaggaggtcctgtcggcggcggcggcgcacaccaccgcgccgctgcagctggaggacttcatcaccgagctcgcgcgcatggaggctcgcgcgcggaaatgctacaagctgtcgttcgatcacgtccagagcaaggatttcctgcgctggctgctgctcgacggctgctacatcctcgtccgcttcggcgacgtcgtgatgaggcgccgacctgaggacgaggaggtggaggaggaggaggagaccacggcggatggcatcgtgctccgccgcgtgaggagatggtttcatgtcccgagctgcaaggggttcctgcgccggcggctgctcgacgcgtgctacgtgctcgtccgcctccgcgacgtcgtcgtcgggcgccgcagcaaggcgcccgtggcggcagaggctaaccgcgtcgtgccgtcggtggaggagagggaagaagaatccgccgtcgaccagcaggaggccgtggcggtggtccgcgacgtgttctacctcgcggagaaccagattcccttcttcgtcgtcgacaagatccaccagctgacgttcctcgacggccagactccggcggtgcacgccatcgcgaggtacgcgcacgagctcctgcgggtgaacgggtactccgtcgcgacgccgaccaaggtggaggagccggagcggccgccggagccagccaacctcctccacctgctgcacatgcacttcacgcctacagtactgacgtccgccgccaccaccggtagccgccgccgcggcggcggtaggcccgtggggcggtggcgcacggcgatggagtactacttcgccggcgtaacgttcaagaagcggcccctcgatcggcgcggcggcgcgcggtgcgtcctcgacgtgaaggtgagcgggtgcggcggcgggacgctggagatgccgcagctgaccgtggacgcggagacgtggccgctgctccgcaacctgatggcgctggagcagtcgaacccggcggcggcggggagccacgtgacggcgtactgcgtgttcatgtcgcagctggcgtgcacggcggcggacgtggagctgctgtcgcggcggggcgtgatcgtgcacgggctggggcaccacggcgaggtggccaagcacttcgcggacctgtgcaaGggggcggtgttcgacgcggacgacgccgacatgaactacctgaggccggtgtgccaggtgctcgagcggcggttccagagccggccgcggcggtggatggcgtggctgaagaagaagtacttcgccaacccgtggctcatcgccggcctcgtggccgccaccgttggcctcgtctgcaccgtcatccaggcggtctactctgttctcggttacacaaaaccagggagctag
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| Protein seq | MERLDQHVIEMASLLAQELKHELASLNSPTTGRAGGESSPPSIMIDKVAELTRNVDKQEYEPHFVSIGPYNRSCDCKSKLARDSDKVGRLQEVLSAAAAHTTAPLQLEDFITELARMEARARKCYKLSFDHVQSKDFLRWLLLDGCYILVRFGDVVMRRRPEDEEVEEEEETTADGIVLRRVRRWFHVPSCKGFLRRRLLDACYVLVRLRDVVVGRRSKAPVAAEANRVVPSVEEREEESAVDQQEAVAVVRDVFYLAENQIPFFVVDKIHQLTFLDGQTPAVHAIARYAHELLRVNGYSVATPTKVEEPERPPEPANLLHLLHMHFTPTVLTSAATTGSRRRGGGRPVGRWRTAMEYYFAGVTFKKRPLDRRGGARCVLDVKVSGCGGGTLEMPQLTVDAETWPLLRNLMALEQSNPAAAGSHVTAYCVFMSQLACTAADVELLSRRGVIVHGLGHHGEVAKHFADLCKGAVFDADDADMNYLRPVCQVLERRFQSRPRRWMAWLKKKYFANPWLIAGLVAATVGLVCTVIQAVYSVLGYTKPGS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0013390 | OsLiXu_08g0013390.01 | Chr08 | 18069618 | 18071572 | - | NAM | ||
| CDS seq | atggagaggctagatcaacatgtcattgagatggcctcactactggcgcaagaactgaagcatgaactcgcaagcctgaactcgccgacgacggggcgggccggcggcgagtcatctccgccgtcgatcatgatcgacaaggtcgccgagctcacccgcaacgtcgacaagcaggagtacgagccgcacttcgtctccatcgggccgtacaaccgcagctgcgactgcaagtccaagctcgccagggactccgacaaggtgggtaggctccaggaggtcctgtcggcggcggcggcgcacaccaccgcgccgctgcagctggaggacttcatcaccgagctcgcgcgcatggaggctcgcgcgcggaaatgctacaagctgtcgttcgatcacgtccagagcaaggatttcctgcgctggctgctgctcgacggctgctacatcctcgtccgcttcggcgacgtcgtgatgaggcgccgacctgaggacgaggaggtggaggaggaggaggagaccacggcggatggcatcgtgctccgccgcgtgaggagatggtttcatgtcccgagctgcaaggggttcctgcgccggcggctgctcgacgcgtgctacgtgctcgtccgcctccgcgacgtcgtcgtcgggcgccgcagcaaggcgcccgtggcggcagaggctaaccgcgtcgtgccgtcggtggaggagagggaagaagaatccgccgtcgaccagcaggaggccgtggcggtggtccgcgacgtgttctacctcgcggagaaccagattcccttcttcgtcgtcgacaagatccaccagctgacgttcctcgacggccagactccggcggtgcacgccatcgcgaggtacgcgcacgagctcctgcgggtgaacgggtactccgtcgcgacgccgaccaaggtggaggagccggagcggccgccggagccagccaacctcctccacctgctgcacatgcacttcacgcctacagtactgacgtccgccgccaccaccggtagccgccgccgcggcggcggtaggcccgtggggcggtggcgcacggcgatggagtactacttcgccggcgtaacgttcaagaagcggcccctcgatcggcgcggcggcgcgcggtgcgtcctcgacgtgaaggtgagcgggtgcggcggcgggacgctggagatgccgcagctgaccgtggacgcggagacgtggccgctgctccgcaacctgatggcgctggagcagtcgaacccggcggcggcggggagccacgtgacggcgtactgcgtgttcatgtcgcagctggcgtgcacggcggcggacgtggagctgctgtcgcggcggggcgtgatcgtgcacgggctggggcaccacggcgaggtggccaagcacttcgcggacctgtgcaaGggggcggtgttcgacgcggacgacgccgacatgaactacctgaggccggtgtgccaggtgctcgagcggcggttccagagccggccgcggcggtggatggcgtggctgaagaagaagtacttcgccaacccgtggctcatcgccggcctcgtggccgccaccgttggcctcgtctgcaccgtcatccaggcggtctactctgttctcggttacacaaaaccagggagctag
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| Protein seq | MERLDQHVIEMASLLAQELKHELASLNSPTTGRAGGESSPPSIMIDKVAELTRNVDKQEYEPHFVSIGPYNRSCDCKSKLARDSDKVGRLQEVLSAAAAHTTAPLQLEDFITELARMEARARKCYKLSFDHVQSKDFLRWLLLDGCYILVRFGDVVMRRRPEDEEVEEEEETTADGIVLRRVRRWFHVPSCKGFLRRRLLDACYVLVRLRDVVVGRRSKAPVAAEANRVVPSVEEREEESAVDQQEAVAVVRDVFYLAENQIPFFVVDKIHQLTFLDGQTPAVHAIARYAHELLRVNGYSVATPTKVEEPERPPEPANLLHLLHMHFTPTVLTSAATTGSRRRGGGRPVGRWRTAMEYYFAGVTFKKRPLDRRGGARCVLDVKVSGCGGGTLEMPQLTVDAETWPLLRNLMALEQSNPAAAGSHVTAYCVFMSQLACTAADVELLSRRGVIVHGLGHHGEVAKHFADLCKGAVFDADDADMNYLRPVCQVLERRFQSRPRRWMAWLKKKYFANPWLIAGLVAATVGLVCTVIQAVYSVLGYTKPGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0356700 | RBH | 1.483269 | 2.498519 | 0.909327 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g26840 | RBH | 0.933512 | 1.563940 | 0.217848 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0356700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0013100 | RBH | 0.0 | 0.0 | 1.355144 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0013120 | RBH | 0.0 | 0.978847 | 0.220293 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0012970 | RBH | 0.196522 | 0.0 | 0.308958 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0013270 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0012920 | RBH | 1.477189 | 0.000000 | 0.921088 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0249700 | RBH | 1.9295975 | 9.5586935 | 1.890462 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0013010 | RBH | 0.094914 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0272800 | SBH | 7.583869 | 10.669149 | 0.1159155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0012600 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0012700 | RBH | 0.0 | 1.419658 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0012580 | RBH | 0.0 | 2.886928 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0044210 | RBH | 0.015737 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0012700 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G012790 | RBH | 0.073465 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0012880 | RBH | 0.000000 | 0.0 | 0.0 |
