Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0011350 | OGI:08037530 | 14/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:14791315-14799771 | ||||||||
| Gene Symbol | OsCBSX1, Cen8.t00941 | ||||||||||
| DNA seq | ttttacccaaacgggacacaggcgcaggcggagccacaagttcctcctcctcaccttctcgctcgccactctccccaaccacaccacgacgaaccccgacgcgagcgagcgggaggtggcgtgcgtgagggagagagactgtgtgtgtgtgtgacgggggtcgggggaacctgctcccatgggcgccacgctgctgctcctgtgcgccgacttctcggctgttgccggcggccgccggcggccttccctgccctcggagccacggttggcggctcccgctgctgggtcccgtgcgccgccgtcgagagcctccgtccgcccgtccgctgccgccgccccgctcgccgcgcgcggcctgccgcaccacgcctccgtcgctggggtgagttctctgtccccattgccttgtttaatgtttattcgtgctgtcttcttgacttagtattcgcagttgaattgtggcgtggacgcatggagttttgtttaggcaggaactttgattgaccgtgcagactgctgagggtggatgtgatcatcttggtgatcgtgtgatttcgtcgatatttttaggatttaccattctccagaatctaattgataaaattccacccgtcagttgatagtgttctagaattggccatctggtcctccggatctggcaccatcgctcattcgttcctccaccaggactcttaagctctcatgctcctctatctatctaatcttctattcttctggcattgaccaagccatgatctggtgcgcgactgcctagactggaactagataagaaattgttgagcgggaacttgagaaattgaagataccttatgaacaaactggatatgttgcaacgaaaagggctagcaactagcaagaatcatgttctctgttcgtgttgtaggatgtcgtcgaagaagacgaggacgaagcgacggagtaacggcttgaggaagaacgcgccagagcacgcggttgtcttgccaccagaaccccatggagagtacctcaaagtgtaatggggccgaggcggcacagccactagacaccgaggacgacgtcgaacccttgtaaggtagggagtagatgtcgatgtcgaaaaacttgtcgtggatgtggacatagagatcgtgtttgcagcccgagcaagaaacacggtcactgttctaacgttgatgtcttggagtggtgtcagctcaagtcccaggcgtcttggagtggtgtcagcttgagtcccaggcggcgagcagcttcgcccgcgatgaaattatgcgtggagcctgagtccacaagggcgacgagtaggggtggcaattacccccacaggggcgggggaaatttctcacccgtgggtgagcgggcgcggggccctataagtttccggggccggggcagcatcttcacccgcgggaccctggagttttgagcaagagatagcccactagctaagaaaagcccaccaaacaacaaaagcagcccacgtactgccatcacaagtctggatggcaagcccattaagaaataaccttatgcagcccactttagaggagatatatgttcaacatcaaaacctaatccatctagcatcaggcatcagttcctggcggcggcaatcgagcgaggctaggaggatgaggcacgcacacgcatcgtctcgtgtcgcgcttcggcttctacgcacccgccgttattgccaagccgttgacgaagcttcacctaccgcattatcactcccggctcccatgtctcgttggctgtcgactcctcgcgtctttcccctccatctctaggcgcctccttatcctatctcttctttgagtcgtttcccttcgtcttcaagtccctagcaccattctcttctccctccagcctccaggcgccagcagttgccacttgcatcggggctacgggtacccggccggagttcggggcccaacaggggccggggccggggatcaattttgccccgatcgtcactccaaggctggggctgggtgaacccgtaagtgagcgggggcagggccgttcctgtccaacccgccccgttgccacccctagcgacgaggtggtgtcccttgatgatgatcggcaattgcatcgtgcggctggtgcaaatgctcgagagagcgaggaggaacacctctatggcctcggtatcttcaggggtaaggacggtggcgttgtcgttaatggacttgacctagaaaatcccctttgcagcacccttgtgactgggtttaaacttctccggatagttgaagcagaagcccttggagcgccgttcattcatctcctctggcgtgaggcacttgaagcgaggcttggcatcggctaccggcggaagggccaacggttacttgtgcgtggaggaagacgacccggtcttgacaggggctggtgttcgtgtagacgtgatcaggtgtggggcaaagcaggtcttgtgctgaggtttgggcgccatgagcgaaacgctcttgtcttggtcctcctgccgctgctcgtaagcccatgccaggctcatggccatctgtagcgagcagggtttctgcatctcaatgttcgtgcgagtggcttaagcaggttggcgatgaaaagcttaactacctgggatgccatcaagggcccggttcacgctaggtgcgagaggagtcgacgctagtattcttcggctgtcccagtacagcggaggtgggatagcattcgtgtagtattcttggaacgcaccggtggtccaaaacgaaggttgacgaagttggcgaagcgcgaccacgttaggacgccctcagtgcattgagttggtgataccattcacgtgctgcaccggtcatgtgatatgaggccagccacacctcttcggctcttcttcctccaacatctcctgtccctgaaaaaactgctcagtgattgagccagtttaacgggtcatcttcatcgtcgtgcgtcaaaaaattgagtttgtggtagcatgatgcaccgcggtgaccgcggcgatcgtcgtgatctgccggagatcggtcacgatgctaaggtgggggcgaacgatctccttcctgatatttctccatgcgagcgatgtgttggtcatgccgatcaagcctggtggtgagggaggtgatgtgtccgatcagctggtcgagcttggcttcaacaccgcgtgacgcggcgtttggctcgacgtgctcgccaaacatagcgagagcggcgaatggctatgatgccaagctgataggcgcacggcggcggtggtgttgtagcggcgaatgctcaaaagggatgattgcggagggggtaacagtgatactcacgatcgacctcaggccgaaaatagggctcatccccagccagcgagaggctctgaatgtgtagagaactagattggattgatcttgcttgtttgattacaatgcagtgcccccttttataatcaagggaataactaatcttagagataaaggacaaagcttgagaacctaacaaccgatcctaacaaactgataatgaaaacaaaaaacaatgagtatggtgctagttggcgatgtacggaatatccacagaatttggcgcagcgtttgcggcgctgttgtgtttcttttgtcaacaacggcgctgataggtacggctgaagaaatgatccatatcgaatacattgatgaggtgcttctgtttttgcatgcatggttttgacctgtcagtaaatgaattgagttccttctgcttgttcccaaggtaagcttgaaatttgaaaagacaatatgacacccaccaggtttatggttttgtgggcgttgttaaaaggtttcgttgtcctacatctcttccatctatttctctacattgttagcaccaacctcctccacattaactcagattcaatgttactctctcactggactattcaatgtcgcccttatgtcagctttgatgccaccgggcaagatatgcaacatgttcactttggacttggtgctttcagattcacctggctccacttggcctggcacctccttatgggttatgatatctagatgtgtggggaatggtcactggttatgtcgcctgcaggtgacctcaccagtggtgcgcacaacaacaatgctcccccgtcttaataagctatgttgtcaagctatggatgcaccactgcagcaaccatgaagtgctccatggatagccaggataagtttgtgtttcagtccaagtcgcttcagcatggagatgcaagcaagccacatgagatcaacctgtttgtgcttaccatcaaaatccacagccaaaccaccattgccttcctcaaattgttgcaacatgctccctccgtctcataaaataccaacctagtactgaatgtgacgcatcttagtacaacgaatctgaatataagatgtgtcacatccagtactaggttggtattttatgagagggagggagtaagtgcatagccaataaccagcaagtgttgttgcagtttccatgggcatagtaaagactactcatttgccttcagttctggttaattcagtgtggattaaaccaatcaatacatttcagtactgaaaagtgaatactcacacgtaagatctgacatgacaggatttgcagtggatctctagtaagcttcatccaggagtggatatttattgagctccatcaagctgtggctccttctgttgtttttctctgttgctgagtggggggatgggagggaaagaacagacgatgaggaagaactaatattgagattcagtaagtaattcagtgagtgctttcttcttttataagaagagtgtcagcttggaagaagaaaatgaaatacgaacaaccgcgctggtcgtaatagatcgacttgaatgcgtcttcttgctccagcattcaagttccatttcaagggaggacgatgtaccatgatactttcagttttgtcgagccctgctttggtctctggtttgatggttgtacgtgctaaaaatccggtacattccgttttgtttcccatcctagtcttttgcgacacagctggtttacttattttgttaggtctcgacttatccgctatgatctccccagtagttcatataggagctattgccgtttcattccgagtggcatgcatatcctagtgatgatgaggcttgatttgacaattcagttttgagtcggcccaaaactgggttgagtgagttgaaaggggtcagatgaaaaatttagtaggttgatgttgtattctaattgaaggttatgttttggacagaggtagttcaagattgatgtggacttgttcctctataacttccttctctatgaggcttgacctccaattttatgtggtacatacaaatttctatttgcaggattgagatatatttatccatattaatattcctgaatttcttgttattcagcaaaacagtggaatttacactgttggtgattttatgactaaaagggaagaactccatgttgtgaagtcaacaacttcagtcgatgaaggttcctttccccctttatgctgtgtgctcttctttctttcattaggaggtaccaacttatcttatatttgagcagcccttgagatgctggtggagcataggataactggctttcctgttattgatgacgagtggaatttggtaagtggtataatattgtatttaaatattgtctttttgaagcacaccactatttacggtgaaccttcatattgagttagctacttgtagaggagggccagatgtcattgcttcaggggattagggtattatattggagagatagcataacttgatatgactgaactcagcaaatagatggaatatatatatttcttgcttgattgataaaagaatattgtccattctttagtgattactcaacttgatattcatatttatatttcacttttcttattaatcacaaattctacgttctaattctcctagatttatgaacacatgttggcgactgctgtttttggaccccttaagccaaggctggccatctgtcacattttgcttctgtacatcagcctacattacttgtctgtccatgtccacacatgattgaacttgggactttttcttggttcgctctttttctgtttctgagtttcacgttcttgccagtcaccactatttttctgtaacatataacatatcaaagtttttgttgataatatgttagttatgttcaacctttaccttttagagcattcgaaagttcaatgtttttcttttacttagcagtattcatacagaaaatgtagacctttagctgcttaatttcctgttatgttgaataaaccttaaactctgaaccaagcatgctttgtcccagttataacatagtgttgctgtgcaatatagtttgtgtaagtgttgcattaatgtgtgccagtatttatttcccatccgcaggttggcgttgtgtcagattatgatctcttagcactcgattcaatatcaggtattcttgtaatagttgatgctggcattcactattacatagttgaaatcgtagttattgggaccagctgatgaactggtgaactgctggttcaaattatattatcttttaaccattttcatgttaaaataatggtttataaggctaaatataaaattataatggctacatagacatcaattcttattccaatcaataaccaggcgttgatccagtggtattgaacgtgtggagattccctagaagccagagcttgtaccatggtcttttagcaaaccaagctggtctaagctctggttctgatttttcccagttggactgccagttccacctggtttaaataactgtgtttcaaatctcatgtagttgcaagttgcaacatcatatggtttggcttcatctagtttacagcatgtttattgaataatcttggaacctgggatcattttggtattgtttatctgtcaaattagcaacagctttcccatgttatgatgctcactgtgtattgttctactgttttaataatcttcttcaggaaatggacttgcggaagtagacatatttcctgaggtggatagtacttggaaggtacttacaaacaaatctatttttaactttgatttcagtttttgtccagctcaagtggaccttttttataaaaaattatagaagttttttaaaagaaattcttgataaaagtaatttttctaggccattgccatgttaagatgatcccctcgaagtcaatctgatactgcaattttactattttagtgaatcacataaccatttggtggctggtctttaccattccatctgtccaagatttggattgttcaactggacaattgtgatgcttggctgaaacataatgtacacactttatgttgatttggaccaagtttcatttatttcttgcatgtacacagtttgcatatccttcagaaaagagtggataggatagtttcacactcagcctgttgtatttttcacagtgaactctcttaaaccatcagacttgagattcttatcttgttcggggtgctagatgtcacttgtttgtgcaacaatatctctttggatgagaagtacacagtagtgtcctggaaccttcattgcagttgatggaatatcactattaacaactaaattagttagaatattgcatcgatgcagataagaatgtggcattttcttcaaacttgcctatcgactatcgtgtatgctttgttccttttatttatatatgtttttttcctactcgtgttcaactgtttctgattttgatgaattgatactctatagacgttcaatgagatacagaagctcttgagcaaaaccaatgggaaagtcattggtgatgttatgacgtctgcacctcttgtggtgcgtgaaactactaaccttgaagatgctgcaaggtattttcagaaaactgcaaacaattctgatatacatcactaacttacttttaaatttctcaaaaaaagggatatcctttattattcaataaaaattatgatgtcatattccacaggttactccttgaaactaagtaccgcaggttacctgtagttgacagttcaggcaaattggtgagtgggcaaaccttatctctttccttttattcttttgcctgagttcagttgttttgagacaaacttatatttggaaggttgggatcataacaagagggaacgtcgtcagggctgcccttaaaattaagaaaaagtttgaaggtgaactttgaatggatactgtggattgaccctttggagacatttaggggcttctacatcggggagatgaacatacggctaggcaattgaattcaagccattgtttcagtggcaagcgaacttcgccaccatgtttataccaggcgtaagttcaataactgccaagtgtaaagtgatggttaaaggactcgtagcagttgaaagggaagctctaattttctactatactagtgccatgctatatcagctcatgggt
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| CDS seq | atgggcgccacgctgctgctcctgtgcgccgacttctcggctgttgccggcggccgccggcggccttccctgccctcggagccacggttggcggctcccgctgctgggtcccgtgcgccgccgtcgagagcctccgtccgcccgtccgctgccgccgccccgctcgccgcgcgcggcctgccgcaccacgcctccgtcgctgggcaaaacagtggaatttacactgttggtgattttatgactaaaagggaagaactccatgttgtgaagtcaacaacttcagtcgatgaagcccttgagatgctggtggagcataggataactggctttcctgttattgatgacgagtggaatttggttggcgttgtgtcagattatgatctcttagcactcgattcaatatcaggaaatggacttgcggaagtagacatatttcctgaggtggatagtacttggaagacgttcaatgagatacagaagctcttgagcaaaaccaatgggaaagtcattggtgatgttatgacgtctgcacctcttgtggtgcgtgaaactactaaccttgaagatgctgcaaggttactccttgaaactaagtaccgcaggttacctgtagttgacagttcaggcaaattggttgggatcataacaagagggaacgtcgtcagggctgcccttaaaattaagaaaaagtttgaaggtgaactttga
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| Protein seq | MGATLLLLCADFSAVAGGRRRPSLPSEPRLAAPAAGSRAPPSRASVRPSAAAAPLAARGLPHHASVAGQNSGIYTVGDFMTKREELHVVKSTTSVDEALEMLVEHRITGFPVIDDEWNLVGVVSDYDLLALDSISGNGLAEVDIFPEVDSTWKTFNEIQKLLSKTNGKVIGDVMTSAPLVVRETTNLEDAARLLLETKYRRLPVVDSSGKLVGIITRGNVVRAALKIKKKFEGEL |
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| Function | CBS domain-containing protein CBSX1, chloroplastic [UniProtKB/Swiss-Prot:O23193] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0011350 | OsLiXu_08g0011350.01 | Chr08 | 14791315 | 14799771 | + | NAM | ||
| CDS seq | atgggcgccacgctgctgctcctgtgcgccgacttctcggctgttgccggcggccgccggcggccttccctgccctcggagccacggttggcggctcccgctgctgggtcccgtgcgccgccgtcgagagcctccgtccgcccgtccgctgccgccgccccgctcgccgcgcgcggcctgccgcaccacgcctccgtcgctgggcaaaacagtggaatttacactgttggtgattttatgactaaaagggaagaactccatgttgtgaagtcaacaacttcagtcgatgaagcccttgagatgctggtggagcataggataactggctttcctgttattgatgacgagtggaatttggttggcgttgtgtcagattatgatctcttagcactcgattcaatatcaggaaatggacttgcggaagtagacatatttcctgaggtggatagtacttggaagacgttcaatgagatacagaagctcttgagcaaaaccaatgggaaagtcattggtgatgttatgacgtctgcacctcttgtggtgcgtgaaactactaaccttgaagatgctgcaaggttactccttgaaactaagtaccgcaggttacctgtagttgacagttcaggcaaattggttgggatcataacaagagggaacgtcgtcagggctgcccttaaaattaagaaaaagtttgaaggtgaactttga
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| Protein seq | MGATLLLLCADFSAVAGGRRRPSLPSEPRLAAPAAGSRAPPSRASVRPSAAAAPLAARGLPHHASVAGQNSGIYTVGDFMTKREELHVVKSTTSVDEALEMLVEHRITGFPVIDDEWNLVGVVSDYDLLALDSISGNGLAEVDIFPEVDSTWKTFNEIQKLLSKTNGKVIGDVMTSAPLVVRETTNLEDAARLLLETKYRRLPVVDSSGKLVGIITRGNVVRAALKIKKKFEGEL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.138630 | 0.557057 | 1.893589 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0313200 | RBH | 10.812050 | 10.761029 | 8.095369 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g22149 | RBH | 6.563718 | 6.625412 | 1.973192 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0313200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0011010 | RBH | 2.796113 | 16.158861 | 7.888539 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0011130 | RBH | 2.186818 | 1.776685 | 6.695078 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0011220 | RBH | 6.391464 | 13.032289 | 10.233757 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0011060 | RBH | 1.124367 | 0.187333 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0010940 | RBH | 56.690697 | 7.089160 | 13.269773 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011000 | RBH | 2.196262 | 0.741313 | 1.460835 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0010560 | RBH | 0.866023 | 0.154916 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0010700 | RBH | 3.041833 | 7.086585 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0010570 | RBH | 43.197128 | 7.331134 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0010620 | RBH | 1.045632 | 8.382037 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G010790 | RBH | 3.690541 | 3.001866 | 2.943226 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0010800 | RBH | 5.275593 | 7.429209 | 17.064816 |
