Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0009880 | OGI:08029840 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:11773981-11775978 | ||||||||
| Gene Symbol | PLM11, OsPLM11, qLPA8.1, - | ||||||||||
| DNA seq | atgtcgcagtccctaattacgagctacccacgagccaaacaaggtagagccctacaaggagtacaattggaagcccgcgggtgcgcagtccatcaaaagattcaaaaccacggccatagcagccgcaacatccctcggcccatgtcatagcctcaaagagacaaatacgtgcgcatcaggaataagttcactttgtgaccctcaggagtgatcgaaatctaatccgtgaccctaaaccacaaaaccggatatctcgacccccaaactcttaaaaccaatacaaatttactccctcggcggttttgtagagcggtttcactgacgtggcgcctacgttgcgatattgaccgagtctttgttccacgtggcattgacgtggcacttacgtggcattagaattaaaaaatatgcgtgggacccgtttgtcattcacacaaaaagaaatgtgggcccactaacatgtggggcccacatgtcagtcctcccttcttcctcctccctctctccctcctctctcgttctctccccttcttccccttcggcaggcggcggggcatgggccgcggtgtggtggtggtggcggtgggttggagctgatacgggttctggagtagggagctcattctcccggtcgatggcgacggcgatgatggagacaagggagcggataaggctgggtagtcggtgccacgatggggttgaggctgaggctgcgaggggagctcatcccctgggtcgatggcgtcgatggccgtggatctcggctcgacgaagaggcggtagccacccccctccggcggtggtgccacggtccccggagtggagtcgacgatgctgaggccaacgctcggcgagatgggatctgcgtgttcgacatcaggctggccaacgccgacaggcacgccggcaacatcctcacttgcagagacaaacaaggccatggcctctccctggttccaatcgaccatggatactgtcttcctgagagtgtaagcactgacgctgacattttcttctagctaattgacttccattttgttcgttggtgatcatgcatcgatcacgcatgtgcagtttgaggattgcatattcgagtggttctactggccgcagtgtcgggagccattcagcgaggagacggtggagtacataaggtcactggacgctgaggaggacatcgccattctgaggtaccatggctgggagatgccagccaagtgcaagcgcgtcctgcgcgtcaccaccatgctgctcaagaaaggcgtggacacgggcctcgccgcgttcgacgtggggagcatcgtgtgcagggatggggccaggcggtcctgggagtggaggagtcgacgatggcgaggccagcgctcggcgagatggggtcagcgtcgtggaggaagtcgaccggcgggggttgtccttggcgtcgtcgatggccgacgacggaggcggaggttgaaggcagcggcccacgcactggcctcgctcgccggccgacacggaggagccagtgtcgtccttcgccgccgccgctgccgctccggccctcgccaaatggaagaggggaggaagaagaaagagagatgagttagtggtccccacaaatttttgtgtgtgaatgacaaacgggtcccacacatattttttaattctcatgccacgtaagtgccacgtcaacgccacatggaacaaagactcggtcaatatcgccatgtaggagccacatcagtgaaaccgtcctccaaaaccgctgagggagtcaaattgcactggttttagaagtttgggggtcgagatatccggttttgtggtttaggatcacaaattagatttcaatcacttttgagggtcacaaagtgaacttatttctgcgcatcaaccagcgcgagtgcgtgactgcgagagcccaagcagatcgcgaacgctctcatcaactagggccacatcgtgcagccaatgcctaccaagccctacgcctaccttaacatcttcacgacctag
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| CDS seq | atgtcgcagtccctaattacgagctacccacgagccaaacaagccacccccctccggcggtggtgccacggtccccggagtggagtcgacgatgctgaggccaacgctcggcgagatgggatctgcgtgttcgacatcaggctggccaacgccgacaggcacgccggcaacatcctcacttgcagagacaaacaaggccatggcctctccctggttccaatcgaccatggatactgtcttcctgagagttttgaggattgcatattcgagtggttctactggccgcagtgtcgggagccattcagcgaggagacggtggagtacataaggtcactggacgctgaggaggacatcgccattctgaggtaccatggctgggagatgccagccaagtgcaagcgcgtcctgcgcgtcaccaccatgctgctcaagaaaggcgtggacacgggcctcgccgcgttcgacgtggggagcatcggccacatcgtgcagccaatgcctaccaagccctacgcctaccttaacatcttcacgacctag
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| Protein seq | MSQSLITSYPRAKQATPLRRWCHGPRSGVDDAEANARRDGICVFDIRLANADRHAGNILTCRDKQGHGLSLVPIDHGYCLPESFEDCIFEWFYWPQCREPFSEETVEYIRSLDAEEDIAILRYHGWEMPAKCKRVLRVTTMLLKKGVDTGLAAFDVGSIGHIVQPMPTKPYAYLNIFTT |
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| Function | Phosphatidylinositol 4-kinase gamma 4 [UniProtKB/Swiss-Prot:Q9ZPY9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0009880 | OsLiXu_08g0009880.01 | Chr08 | 11773981 | 11775978 | + | NAM | ||
| CDS seq | atgtcgcagtccctaattacgagctacccacgagccaaacaagccacccccctccggcggtggtgccacggtccccggagtggagtcgacgatgctgaggccaacgctcggcgagatgggatctgcgtgttcgacatcaggctggccaacgccgacaggcacgccggcaacatcctcacttgcagagacaaacaaggccatggcctctccctggttccaatcgaccatggatactgtcttcctgagagttttgaggattgcatattcgagtggttctactggccgcagtgtcgggagccattcagcgaggagacggtggagtacataaggtcactggacgctgaggaggacatcgccattctgaggtaccatggctgggagatgccagccaagtgcaagcgcgtcctgcgcgtcaccaccatgctgctcaagaaaggcgtggacacgggcctcgccgcgttcgacgtggggagcatcggccacatcgtgcagccaatgcctaccaagccctacgcctaccttaacatcttcacgacctag
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| Protein seq | MSQSLITSYPRAKQATPLRRWCHGPRSGVDDAEANARRDGICVFDIRLANADRHAGNILTCRDKQGHGLSLVPIDHGYCLPESFEDCIFEWFYWPQCREPFSEETVEYIRSLDAEEDIAILRYHGWEMPAKCKRVLRVTTMLLKKGVDTGLAAFDVGSIGHIVQPMPTKPYAYLNIFTT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.619260 | 0.000000 | 0.753135 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0274775 | RBH | 1.737791 | 2.974599 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0274775 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0009470 | RBH | 0.589784 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0009600 | RBH | 0.642924 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0009650 | RBH | 3.562366 | 13.137362 | 14.743976 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0009530 | RBH | 0.248184 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0009460 | RBH | 1.185226 | 0.000000 | 3.464449 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0162300 | RBH | 2.680393 | 4.511341 | 3.7099815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0009490 | RBH | 0.348230 | 0.000000 | 0.351914 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0163000 | SBH | 20.4427915 | 43.2926635 | 27.693262 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0009010 | RBH | 0.029397 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0009230 | RBH | 0.148048 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0009080 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0009160 | RBH | 1.480121 | 11.391369 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G009370 | RBH | 0.000000 | 0.000000 | 1.394992 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0009310 | RBH | 0.868840 | 0.000000 | 0.206277 |
