Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0007390 | OGI:08019800 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:8286048-8286701 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggccaccgtcctcgtggtgttgatggtcgtcagcgccggcggcttatccccaccatgtgcggccgctgcgaaggaggagaagccagtggtggtgctgccaccagcggcggcgccaggggaggcgccctccgcggacgcggcagcgttcgtccgctcctgctgcgacaccgccctgcaggccgaccgcgacggctccagcttctgctacgaccatctcctcccctacgctgccttcttcgagggcaaccaggtgaaggtcgccgaggtggccgccaccatcctgagcaccaacctctgggtctacgtcgaccaattgcgcaaggtccagggaggggccggcaagggggacccgaacctgaacgcctgcgtcgatgacttcagcgtagccgccggcgagaacatcaccagggaggcgctgcagagcctcggccgcctcgccgccgccggaaatggcaagcgcagcaaggaggatctggagaatgcgcaaaagtggatcaaaggggtggagaaaccctacaacggtgggatcgggaaagcatccggttgcgagataggttacctgttcacttatagcgatgatctccccgcccagaaaacccttggatatactttcgacacagctagctccctcatcaatcacataaagctttaa
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| CDS seq | atggccaccgtcctcgtggtgttgatggtcgtcagcgccggcggcttatccccaccatgtgcggccgctgcgaaggaggagaagccagtggtggtgctgccaccagcggcggcgccaggggaggcgccctccgcggacgcggcagcgttcgtccgctcctgctgcgacaccgccctgcaggccgaccgcgacggctccagcttctgctacgaccatctcctcccctacgctgccttcttcgagggcaaccaggtgaaggtcgccgaggtggccgccaccatcctgagcaccaacctctgggtctacgtcgaccaattgcgcaaggtccagggaggggccggcaagggggacccgaacctgaacgcctgcgtcgatgacttcagcgtagccgccggcgagaacatcaccagggaggcgctgcagagcctcggccgcctcgccgccgccggaaatggcaagcgcagcaaggaggatctggagaatgcgcaaaagtggatcaaaggggtggagaaaccctacaacggtgggatcgggaaagcatccggttgcgagataggttacctgttcacttatagcgatgatctccccgcccagaaaacccttggatatactttcgacacagctagctccctcatcaatcacataaagctttaa
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| Protein seq | MATVLVVLMVVSAGGLSPPCAAAAKEEKPVVVLPPAAAPGEAPSADAAAFVRSCCDTALQADRDGSSFCYDHLLPYAAFFEGNQVKVAEVAATILSTNLWVYVDQLRKVQGGAGKGDPNLNACVDDFSVAAGENITREALQSLGRLAAAGNGKRSKEDLENAQKWIKGVEKPYNGGIGKASGCEIGYLFTYSDDLPAQKTLGYTFDTASSLINHIKL |
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| Function | Uncharacterized protein Os08g0218700/LOC_Os08g12160 [UniProtKB/Swiss-Prot:Q6YUE5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0007390 | OsLiXu_08g0007390.01 | Chr08 | 8286048 | 8286701 | + | NAM | ||
| CDS seq | atggccaccgtcctcgtggtgttgatggtcgtcagcgccggcggcttatccccaccatgtgcggccgctgcgaaggaggagaagccagtggtggtgctgccaccagcggcggcgccaggggaggcgccctccgcggacgcggcagcgttcgtccgctcctgctgcgacaccgccctgcaggccgaccgcgacggctccagcttctgctacgaccatctcctcccctacgctgccttcttcgagggcaaccaggtgaaggtcgccgaggtggccgccaccatcctgagcaccaacctctgggtctacgtcgaccaattgcgcaaggtccagggaggggccggcaagggggacccgaacctgaacgcctgcgtcgatgacttcagcgtagccgccggcgagaacatcaccagggaggcgctgcagagcctcggccgcctcgccgccgccggaaatggcaagcgcagcaaggaggatctggagaatgcgcaaaagtggatcaaaggggtggagaaaccctacaacggtgggatcgggaaagcatccggttgcgagataggttacctgttcacttatagcgatgatctccccgcccagaaaacccttggatatactttcgacacagctagctccctcatcaatcacataaagctttaa
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| Protein seq | MATVLVVLMVVSAGGLSPPCAAAAKEEKPVVVLPPAAAPGEAPSADAAAFVRSCCDTALQADRDGSSFCYDHLLPYAAFFEGNQVKVAEVAATILSTNLWVYVDQLRKVQGGAGKGDPNLNACVDDFSVAAGENITREALQSLGRLAAAGNGKRSKEDLENAQKWIKGVEKPYNGGIGKASGCEIGYLFTYSDDLPAQKTLGYTFDTASSLINHIKL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 2.729747 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0218700 | SBH | 0.0 | 0.0 | 22.053646 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g12160 | RBH | 0.0 | 0.0 | 5.387980 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0218700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0007220 | RBH | 0.0 | 0.0 | 9.106144 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0007290 | RBH | 0.0 | 0.0 | 18.632296 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0007390 | RBH | 0.0 | 0.0 | 38.105770 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0007380 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0007160 | RBH | 0.440773 | 0.0 | 45.251678 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0116400 | RBH | 0.0167805 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0007010 | RBH | 0.0 | 0.0 | 18.015175 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0111000 | SBH | 0 | 0 | 0.0127395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006910 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006770 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0007410 | RBH | 0.0 | 0.0 | 4.891907 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006820 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G007160 | SBH | 0.0 | 0.082661 | 8.816690 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0007010 | RBH | 0.0 | 0.0 | 85.886208 |
