Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0005550 | OGI:08012860 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:5113310-5114958 | ||||||||
| Gene Symbol | CCR29, OsCCR29 | ||||||||||
| DNA seq | tcaggtcagaatccccaaaccaatgtaggattcaaagctatccctgagggtttcctccatgggcctgaaggtccaacctagcttctcaagcttctctgaactaaacctagtgttttgttcctcatccacttcgataaagaaaaacacaacacaataagtctctacatatatcacgaataaacaaaaatgcatatatcacacttcaggcatgtactaattaaggaacacaaaaataattaagcttacttttggggataattgaaagctggatataagctctttgacgtgtttattatatcacttagttttcttggagttgaactgcatatgtatcgttcagatccccctgagttttcatagactaaaagaatagcatcggcaacatcgcgaacatccaacagagtctcgagtctgtttccagccgtctcgttgtctcctgcattagaaacaggggcgcagccaggcttggggcaacttggcctcgagtccaatacttggctccaaaactccaagtaaatcctttagtgaattgtaaataaaatttggaagtatataatttctaactgaaattgtcaaattcagccctagcttgcatatttttttgctccaccaccgataagagcagtatggtatttcagtacgcaacacttattacacttattatacagagtaaagtagcttgatgtttaattattgagctacgaaaatattatagcaatttctttgcatgattcatattggaaaaggaaaaaatatgaaacaagtggtgagatatcatgcatgctattattgtctaacacaacatcatacgggaattttcagttaaactaaatccgctactattgttgaatgtaaaaggcaaactgaaataagaaaattcctatccaccttttataatatgaaagaagacttcaatacttgtaggtactgtaggccaatggacccattatcaacgccggacagatagttacaatgtccatcccagtttttgccgcgtactcaaaagcctcacgctctgccagtgttttggaaaggtaataggggtaccactcctgtcagaaacagcataattaattgatttttagtgcatttgacaaagaagtagcatgaattactgaaggtaaggaaattgtctctatgattggtaaacaaaccatgcacgcattgctaaaaagggaaaaatattgtaccaaatatcaggaaaagaaaattcagattgtgcccttgtttatctgtataaagtggagtgcataggacaagacaaagtcttttttaattttttttttaaaaatcaattcagactgtttctctctcctagagtgcataggaaaaattgcatatgcccacctaacccaacatgccaaaaattgcatgttacaaaagtagaaaatgttaggacgacataacactacttcatcagtactcttaataacaacttaacatgattactggagtacctcattcttcctgcaggtctcctcatctgaccagctgtcttcgttgaagggctcacccgttggccagttgggattattgaacactgcgacaactgaagaaaccaccacaactcgcttcacttttgcttcgtggctagctctcaacacattcagtgtcccagttacagccgtagcgatgatatctacctgcat
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| CDS seq | atgcaggtagatatcatcgctacggctgtaactgggacactgaatgtgttgagagctagccacgaagcaaaagtgaagcgagttgtggtggtttcttcagttgtcgcagtgttcaataatcccaactggccaacgggtgagcccttcaacgaagacagctggtcagatgaggagacctgcaggaagaatgaggagtggtacccctattacctttccaaaacactggcagagcgtgaggcttttgagtacgcggcaaaaactgggatggacattgtaactatctgtccggcgttgataatgggtccattggcctacaagacttattgtgttgtgtttttctttatcgaagtggatgaggaacaaaacactaggtttagttcagagaagcttgagaagctaggttggaccttcaggcccatggaggaaaccctcagggatagctttgaatcctacattggtttggggattctgacctga
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| Protein seq | MQVDIIATAVTGTLNVLRASHEAKVKRVVVVSSVVAVFNNPNWPTGEPFNEDSWSDEETCRKNEEWYPYYLSKTLAEREAFEYAAKTGMDIVTICPALIMGPLAYKTYCVVFFFIEVDEEQNTRFSSEKLEKLGWTFRPMEETLRDSFESYIGLGILT |
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| Function | Cinnamoyl-CoA reductase 1 [UniProtKB/Swiss-Prot:Q6K9A2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0005550 | OsLiXu_08g0005550.01 | Chr08 | 5113310 | 5114958 | - | NAM | ||
| CDS seq | atgcaggtagatatcatcgctacggctgtaactgggacactgaatgtgttgagagctagccacgaagcaaaagtgaagcgagttgtggtggtttcttcagttgtcgcagtgttcaataatcccaactggccaacgggtgagcccttcaacgaagacagctggtcagatgaggagacctgcaggaagaatgaggagtggtacccctattacctttccaaaacactggcagagcgtgaggcttttgagtacgcggcaaaaactgggatggacattgtaactatctgtccggcgttgataatgggtccattggcctacaagacttattgtgttgtgtttttctttatcgaagtggatgaggaacaaaacactaggtttagttcagagaagcttgagaagctaggttggaccttcaggcccatggaggaaaccctcagggatagctttgaatcctacattggtttggggattctgacctga
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| Protein seq | MQVDIIATAVTGTLNVLRASHEAKVKRVVVVSSVVAVFNNPNWPTGEPFNEDSWSDEETCRKNEEWYPYYLSKTLAEREAFEYAAKTGMDIVTICPALIMGPLAYKTYCVVFFFIEVDEEQNTRFSSEKLEKLGWTFRPMEETLRDSFESYIGLGILT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0183900 | SBH | 2.439036 | 2.492658 | 0.836133 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g08500 | SBH | 1.582312 | 1.748188 | 0.126664 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0183900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0005610 | SBH | 1.875756 | 0.0 | 0.367443 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0005590 | RBH | 1.246153 | 0.0 | 0.253853 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0005670 | RBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005580 | SBH | 0.245523 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0005350 | SBH | 55.743267 | 0.0 | 8.634309 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0074500 | SBH | 11.4444785 | 0.1406145 | 8.186721 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0005240 | SBH | 0.488154 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0077300 | SBH | 13.452468 | 2.365669 | 0.0747425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0005240 | SBH | 0.223447 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0005340 | SBH | 1.801401 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0005120 | SBH | 22.326017 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0005560 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0005300 | SBH | 0.910727 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G005260 | SBH | 0.866539 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005230 | SBH | 2.316589 | 0.0 | 0.000000 |
