Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0003130 | OGI:08007500 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:2856311-2859944 | ||||||||
| Gene Symbol | OsDegp11, DEGP11, OsDeg-like 2, OsSTA205 | ||||||||||
| DNA seq | gcccaacaagccaacaaatagggagtagtgaggccttgtacaacccgacggagtgagagggacccaagccgacaaatccctagcgcccgtgactccgcaaatcgtgaccggcggcgatcgatcgatcgatgccaccgaaattgcggaggaggtcgacgggggcggcactatcccacgccgcgagtggagaagaagctcccaaatcatcggaaacgagtcctgctccagcggcggcggcggcgggcagtggaaggtggactcgatctagatcagcgaggagtcacctagggttggattcggattctaccgaccaccctagggtagtgtcgggctcttctgatcaaccgccgaagaagaggaagaagacgacaacggcggtggccgccgccgccggcagtacaaggctggcctcccggccggtccctggtcgctacccggattaccccagtttacggccagggcaacatgctcttagcaagaaacacatgagtgctgttcaagaatggatggaggagtgcagcaggatcagcaagctcgagaaacaaggttaattaattttcctctcttaccttgcctaatccttcaaattaaaccctgcctgattcatgagtcatgaccactgatctcacttcttcgatctcgttagctcgtcctgaagatatccccactctcagagataacccccgggatcccctcactcctgatgccgtggtcagctcacaagacaaggccatggtgctgcgtgtggctcgttccgttgtcagtgtttcatcctcaaagcctggtaaaacaaatcatccgatcgacctttaatattttcatatgatgatcctagctatatgaaattatgaatgtgacaatggacagcttgcagatggggaactgatttcccagtgcaccggcatcgtgattggttgggatggggccaacaagtgcgccaagatcctgacctcttgttctacggtgtgcgacttcgacggtgaatttattcaaggtacataattcgcttcttcaaattatatatgccgtgcgtatggtcttctatgttaaatgctgcatcttatcagtgtagttgatcatgcctgcctgcaggtgctttaattatttgagttcacgtagcaactgctgttgtctaattctctttgtttgtcatccatgttttactgacattattgaaattgaggtcaaataaatctggttatattgcccacttggcattccaaaggcctctctccgcttaatgtaaaagtgacacaagaattctaaccctttgcttttactctataaaccaaattatgtaatgtcaagcaacacattaaacaccactgcatatgtttgtctcactacggcttagctacctgcacctagcacgctgcattggatattctattgtgttgaggcatttgtctacatggtggttttgatacatgttttttccatgtcttggtgtgggtcccttcacagttacttttgttatttcatctattgtttgaatgttcttggcactctcttagtacaatctaaacgcactgttttaaaatcatattatgcgcttggttttgcctttctttagagaagtgttactgttaccgaatatctatgccttgcatgcctcttgttatactccacgatgttgattctttttctatcctttcgcccatttttcaattatctttacccacctagagtttttcttgaaggtacttatctatgcaatttcttatgatatttagtcctttttatactagttaactatatttgatcaaatttcaaacttttcagctatccgttcgtatgccaaataggacaattacagaaggacggttgttattcttcaatgtacactatggtatcgctcttttggaggtcaagggagacttccagttgcaggccccttcttttggcttgggcataaactatggccaggatgtatttgcattggctagggatgaaaacatgtccttaatggttaggcatggaacaatttcatggctggattatcctgggttattgaccaatccctatatgtttctgagttgtgatattcccgaggtattgatgcaatattatgttcgcattttaatgcattcttatattcttatgtaattaatttcatactatctgtttaatgtagggtggttcaggagggccggtggttgaccatgatggtaatatcattggaattgcatttgatagaaacccgggtccggttgttatctctatcactacaatcagaacttgcattgagatgtggcatcagtttaggtctgtttccttttttttccccctaactattgtgatctatattctacttggattggcaaaaaattaaaaaagaaagaaagaaactttatagtacttgttctggattagccaaaaaaacattttatagtttaacttttggagctgacgctctaaatccgactcatttttagccgtgttgctcgtcccatgcttggcatgcaattgaaggctgtggaactactggatgtctctatgcgggaggaactttgtcttgagtacaatatcaccggcggtttcattgtgaatctggtataatactgttccatccagatatttttctcacaggatttgacccatagtatttgaccctttttggtctcaaattaaggtaaaagttgattctactgctgagagaatcggtattagacgaggggacgtgattgtttttaaggataaccgttgttctactttacctcaggtgataagaactgttgctctttgttaattaatttactataaacataatatggtttatatctaattacatcttgtgaacagttagaagattacctcctttctcttggttggggatacctgcagggcttaagctttacagtagatctcaaggtacgttaaaagctacatgtgaaaaaaaaattactttttgttcagtactggaaggtaaaagaaaaaaaaaactgaacacccattttgtttttctctatgcaggttgaagttcataatctcgccgactcatataaggaaagcattactttccctgtaccgttctctgatgcttctaagcgggtaactacttgaattgtagtaaagcctcactttgctatttgttttccccaaaattcatcctcacttttcattttaaaaaaaatcctcacaatgcaaattatgtttggcaagttctgtactatggcttcctatagtttggaacatgtgttagctttattatcagcccatgcatctagaattataattcagaatttaatactgtcatagctaacccgagggtgattaaccattcaatttgaatacatttatttttggcataattaactagatgactcaatcagcatttgatttggatattgcgaggacatttattttttgggatggtaaaattatgtgcttaattgacaaatgtttctaaatgtaggttgactgatggtgtatatgacaggtgctataagattgaagtcttagagatgctgtaagattgaagtcgcctagagttatatgactgaccaaaggatatgtaatatacttcttttaggataatttatcaagtcatgttatcagcgatgtaacctcattgcctaaatggttgtgctaatattttatatgaatattctgcaatggtgagatttagtaattt
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| CDS seq | atgccaccgaaattgcggaggaggtcgacgggggcggcactatcccacgccgcgagtggagaagaagctcccaaatcatcggaaacgagtcctgctccagcggcggcggcggcgggcagtggaaggtggactcgatctagatcagcgaggagtcacctagggttggattcggattctaccgaccaccctagggtagtgtcgggctcttctgatcaaccgccgaagaagaggaagaagacgacaacggcggtggccgccgccgccggcagtacaaggctggcctcccggccggtccctggtcgctacccggattaccccagtttacggccagggcaacatgctcttagcaagaaacacatgagtgctgttcaagaatggatggaggagtgcagcaggatcagcaagctcgagaaacaagctcgtcctgaagatatccccactctcagagataacccccgggatcccctcactcctgatgccgtggtcagctcacaagacaaggccatggtgctgcgtgtggctcgttccgttgtcagtgtttcatcctcaaagcctgatggggaactgatttcccagtgcaccggcatcgtgattggttgggatggggccaacaagtgcgccaagatcctgacctcttgttctacggtgtgcgacttcgacggtgaatttattcaagagtttttcttgaagctatccgttcgtatgccaaataggacaattacagaaggacggttgttattcttcaatgtacactatggtatcgctcttttggaggtcaagggagacttccagttgcaggccccttcttttggcttgggcataaactatggccaggatgtatttgcattggctagggatgaaaacatgtccttaatggttaggcatggaacaatttcatggctggattatcctgggttattgaccaatccctatatgtttctgagttgtgatattcccgagggtggttcaggagggccggtggttgaccatgatggtaatatcattggaattgcatttgatagaaacccgggtccggttgttatctctatcactacaatcagaacttgcattgagatgtggcatcagtttagccgtgttgctcgtcccatgcttggcatgcaattgaaggctgtggaactactggatgtctctatgcgggaggaactttgtcttgagtacaatatcaccggcggtttcattgtgaatctggtaaaagttgattctactgctgagagaatcggtattagacgaggggacgtgattgtttttaaggataaccgttgttctactttacctcagttagaagattacctcctttctcttggttggggatacctgcagggcttaagctttacagtagatctcaaggttgaagttcataatctcgccgactcatataaggaaagcattactttccctgtaccgttctctgatgcttctaagcgggtaactacttga
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| Protein seq | MPPKLRRRSTGAALSHAASGEEAPKSSETSPAPAAAAAGSGRWTRSRSARSHLGLDSDSTDHPRVVSGSSDQPPKKRKKTTTAVAAAAGSTRLASRPVPGRYPDYPSLRPGQHALSKKHMSAVQEWMEECSRISKLEKQARPEDIPTLRDNPRDPLTPDAVVSSQDKAMVLRVARSVVSVSSSKPDGELISQCTGIVIGWDGANKCAKILTSCSTVCDFDGEFIQEFFLKLSVRMPNRTITEGRLLFFNVHYGIALLEVKGDFQLQAPSFGLGINYGQDVFALARDENMSLMVRHGTISWLDYPGLLTNPYMFLSCDIPEGGSGGPVVDHDGNIIGIAFDRNPGPVVISITTIRTCIEMWHQFSRVARPMLGMQLKAVELLDVSMREELCLEYNITGGFIVNLVKVDSTAERIGIRRGDVIVFKDNRCSTLPQLEDYLLSLGWGYLQGLSFTVDLKVEVHNLADSYKESITFPVPFSDASKRVTT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0003130 | OsLiXu_08g0003130.01 | Chr08 | 2856311 | 2859383 | + | NAM | ||
| CDS seq | atgccaccgaaattgcggaggaggtcgacgggggcggcactatcccacgccgcgagtggagaagaagctcccaaatcatcggaaacgagtcctgctccagcggcggcggcggcgggcagtggaaggtggactcgatctagatcagcgaggagtcacctagggttggattcggattctaccgaccaccctagggtagtgtcgggctcttctgatcaaccgccgaagaagaggaagaagacgacaacggcggtggccgccgccgccggcagtacaaggctggcctcccggccggtccctggtcgctacccggattaccccagtttacggccagggcaacatgctcttagcaagaaacacatgagtgctgttcaagaatggatggaggagtgcagcaggatcagcaagctcgagaaacaagctcgtcctgaagatatccccactctcagagataacccccgggatcccctcactcctgatgccgtggtcagctcacaagacaaggccatggtgctgcgtgtggctcgttccgttgtcagtgtttcatcctcaaagcctgatggggaactgatttcccagtgcaccggcatcgtgattggttgggatggggccaacaagtgcgccaagatcctgacctcttgttctacggtgtgcgacttcgacggtgaatttattcaagagtttttcttgaagctatccgttcgtatgccaaataggacaattacagaaggacggttgttattcttcaatgtacactatggtatcgctcttttggaggtcaagggagacttccagttgcaggccccttcttttggcttgggcataaactatggccaggatgtatttgcattggctagggatgaaaacatgtccttaatggttaggcatggaacaatttcatggctggattatcctgggttattgaccaatccctatatgtttctgagttgtgatattcccgagggtggttcaggagggccggtggttgaccatgatggtaatatcattggaattgcatttgatagaaacccgggtccggttgttatctctatcactacaatcagaacttgcattgagatgtggcatcagtttagccgtgttgctcgtcccatgcttggcatgcaattgaaggctgtggaactactggatgtctctatgcgggaggaactttgtcttgagtacaatatcaccggcggtttcattgtgaatctggtaaaagttgattctactgctgagagaatcggtattagacgaggggacgtgattgtttttaaggataaccgttgttctactttacctcagttagaagattacctcctttctcttggttggggatacctgcagggcttaagctttacagtagatctcaaggttgaagttcataatctcgccgactcatataaggaaagcattactttccctgtaccgttctctgatgcttctaagcgggtaactacttga
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| Protein seq | MPPKLRRRSTGAALSHAASGEEAPKSSETSPAPAAAAAGSGRWTRSRSARSHLGLDSDSTDHPRVVSGSSDQPPKKRKKTTTAVAAAAGSTRLASRPVPGRYPDYPSLRPGQHALSKKHMSAVQEWMEECSRISKLEKQARPEDIPTLRDNPRDPLTPDAVVSSQDKAMVLRVARSVVSVSSSKPDGELISQCTGIVIGWDGANKCAKILTSCSTVCDFDGEFIQEFFLKLSVRMPNRTITEGRLLFFNVHYGIALLEVKGDFQLQAPSFGLGINYGQDVFALARDENMSLMVRHGTISWLDYPGLLTNPYMFLSCDIPEGGSGGPVVDHDGNIIGIAFDRNPGPVVISITTIRTCIEMWHQFSRVARPMLGMQLKAVELLDVSMREELCLEYNITGGFIVNLVKVDSTAERIGIRRGDVIVFKDNRCSTLPQLEDYLLSLGWGYLQGLSFTVDLKVEVHNLADSYKESITFPVPFSDASKRVTT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0003130 | OsLiXu_08g0003130.02 | Chr08 | 2856361 | 2859944 | + | IsoSeq | ||
| CDS seq | agtgagagggacccaagccgacaaatccctagcgcccgtgactccgcaaatcgtgaccggcggcgatcgatcgatcgatgccaccgaaattgcggaggaggtcgacgggggcggcactatcccacgccgcgagtggagaagaagctcccaaatcatcggaaacgagtcctgctccagcggcggcggcggcgggcagtggaaggtggactcgatctagatcagcgaggagtc
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| Protein seq | SERDPSRQIPSARDSANRDRRRSIDRCHRNCGGGRRGRHYPTPRVEKKLPNHRKRVLLQRRRRRAVEGGLDLDQRGV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr08 | 2857304 | 2858093 | + | OsLiXu_08g0003130.01 | OsLiXu_08g0003130.02,OsLiXu_08g0003130.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.496342 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0149000 | RBH | 0.0 | 0.0 | 0.286084 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g05340 | RBH | 0.0 | 0.0 | 0.073644 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0149000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003290 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003330 | RBH | 0.000000 | 0.000000 | 1.111179 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003300 | RBH | 0.000000 | 0.0 | 4.964814 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003290 | RBH | 0.0 | 0.051554 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0003120 | RBH | 0.000000 | 4.611621 | 3.887157 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0043600 | RBH | 2.201976 | 2.432149 | 5.8830485 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002980 | RBH | 0.0 | 0.181537 | 0.430202 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0048800 | RBH | 1.4967985 | 2.0725635 | 10.8596665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0003010 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0003060 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002860 | RBH | 2.839147 | 5.154099 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0003090 | RBH | 0.968479 | 0.590885 | 2.123413 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0003050 | RBH | 0.078449 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002990 | RBH | 0.000000 | 0.0 | 0.241269 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002870 | RBH | 0.0 | 0.0 | 0.0 |
