Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0002300 | OGI:08004980 | 14/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:1959688-1962186 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cgacaccgcctgttcttcctcctagccctcgcagcgagcaaaccctaggttcccccccccccccccccccccccctctctctctctctgcgggcggcggcggcgacatctccctggtacgcgcgcacatcgatcccctcttcttcccaattcgatgcaatcgcgctcttttttttttatggccatcatgcatgaacaacagcgcgccgcatcgtcttcttcccagatggcggacggggccaacaaagacggtgggggttcggctgcgggggagcggcccatggttgcaatcaagcgcaagcgggagaaggtgcctgggcttgccgaagatggagattcttccccttctagcgctaatcgatccgtcgacatggaggtggaggagaaattagattactcttgtggtgagtagtagtgtacattattattccattatcattcagataattcagatatttagtatatgtgtataagtgtattgattatgtgagcagcccgatatgtatagtttaccctgtttgattcctgattccttgcttggttgctgctggatgtaacgtataagataataaaaattaaaaatatcttaatatggcatttttattttacagctggtgccgaagaagatgttagtagtggatgcagcattgagatggaggatgtgggtgagcagcggcaagtggagcccacatgggaggataaggtgctgagggttcttcacattgttcgtcgcaatcagtttgctgaatatgaccccaaggtaggtgggatcgtatacagccgcttctgcatccacaacatagccttattcgatcttgacaaagagtgtgagtatacattattttgttaatttccaatcataattccttctttttcattatcttaaatccattcatgttcatccctgcacctagtatatatatgttgtagtagttttatacatatacatccttgatcgttatgtgtccatatcatgcatcgaaacattcacattcttggaatattgattttgatacagcaacgattgggcctgggccaccaattaactcgctcgatccctctgaatattggtggctggatgactcactgaatatcatagcgatcaaggttgccgagtccgacgtgggttaccctgtcagaatatatggcaccgttcttgcgagggatcagcaagactacagatgcgtctatttgttcaggcgaagcagggacaatccccaactcatcacctcaccggtatgtactcatgtatccctcttaaacattgcttctactaatcaaatacattgtaaacataacaaacctgtacaatgggagatgcaacctgattagcaggttaattgattgatgggatgagacagtagttggtgggagaaatgcccagaggtcttccggctagctccacaaggtggtgggctagacgacctgggttcaaatcctcaccccttctaattatttgatattaggttcttccctattcgcgtcttttgagacagtagttggtggtgtgaaattttttTgaaagtcttggatcttctagtagtggcatctaagtgatcctaaatcttttggtgataagcacataaaagctcatatcttcgtgtcgtatcgaatctacccaaatttctctttggcatgatattgatgtcattagaaattatatttgaggtatattaattgagtttatttgttccttatgttgttttttatcaacttgcttttccttgaatatccatgtgcaggaggatagtctaaccttgacaggcccatatcgagcacttgcttcaaaagatattataattttcgagttcaatttgaagattttgggcgatggggatgttgacagagatttcggcaaaggtgtgatagaacacagttgtatccgtcacacaaagaaactcatgactttagatctaacaagttggttgagcaaaatagatttggtttatacgcctgttgattatgctgtagaagcttcacttgcagtcaatattttggatgggccatctgatttcaccggtaaagtgattgcttggactagtggaaataaggacaatgagatcgttctacatgatacccaagtgacaggctctccaacaaaacttggagatgatggatctattgagttatctcgtcatatagtagtagtcccattggatgaagagctagtgctcaatgttattttgtttcatggtgatgaccatgaagacgaatgctttgaatttgttcttaccaactatgatgaagaatctagtttcaaagaaggccgttttgagctgcaggtgaaggtcatctggacaggcgtagtgagaacgggagaacacaagatgtgggagagcacagggagaaatagaatgttagtgtgattaagtttaaaatcattggaaagatgttaatagtaacctctctggaggaggaaatgtcttttgttatcagcattgtaattaagattctgttttatgtgtactatctatctaatatgaatttggatcttggtcgt
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| CDS seq | atggcggacggggccaacaaagacggtgggggttcggctgcgggggagcggcccatggttgcaatcaagcgcaagcgggagaaggtgcctgggcttgccgaagatggagattcttccccttctagcgctaatcgatccgtcgacatggaggtggaggagaaattagattactcttgtgctggtgccgaagaagatgttagtagtggatgcagcattgagatggaggatgtgggtgagcagcggcaagtggagcccacatgggaggataaggtgctgagggttcttcacattgttcgtcgcaatcagtttgctgaatatgaccccaaggtaggtgggatcgtatacagccgcttctgcatccacaacatagccttattcgatcttgacaaagagtcaacgattgggcctgggccaccaattaactcgctcgatccctctgaatattggtggctggatgactcactgaatatcatagcgatcaaggttgccgagtccgacgtgggttaccctgtcagaatatatggcaccgttcttgcgagggatcagcaagactacagatgcgtctatttgttcaggcgaagcagggacaatccccaactcatcacctcaccggaggatagtctaaccttgacaggcccatatcgagcacttgcttcaaaagatattataattttcgagttcaatttgaagattttgggcgatggggatgttgacagagatttcggcaaaggtgtgatagaacacagttgtatccgtcacacaaagaaactcatgactttagatctaacaagttggttgagcaaaatagatttggtttatacgcctgttgattatgctgtagaagcttcacttgcagtcaatattttggatgggccatctgatttcaccggtaaagtgattgcttggactagtggaaataaggacaatgagatcgttctacatgatacccaagtgacaggctctccaacaaaacttggagatgatggatctattgagttatctcgtcatatagtagtagtcccattggatgaagagctagtgctcaatgttattttgtttcatggtgatgaccatgaagacgaatgctttgaatttgttcttaccaactatgatgaagaatctagtttcaaagaaggccgttttgagctgcaggtgaaggtcatctggacaggcgtagtgagaacgggagaacacaagatgtgggagagcacagggagaaatagaatgttagtgtga
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| Protein seq | MADGANKDGGGSAAGERPMVAIKRKREKVPGLAEDGDSSPSSANRSVDMEVEEKLDYSCAGAEEDVSSGCSIEMEDVGEQRQVEPTWEDKVLRVLHIVRRNQFAEYDPKVGGIVYSRFCIHNIALFDLDKESTIGPGPPINSLDPSEYWWLDDSLNIIAIKVAESDVGYPVRIYGTVLARDQQDYRCVYLFRRSRDNPQLITSPEDSLTLTGPYRALASKDIIIFEFNLKILGDGDVDRDFGKGVIEHSCIRHTKKLMTLDLTSWLSKIDLVYTPVDYAVEASLAVNILDGPSDFTGKVIAWTSGNKDNEIVLHDTQVTGSPTKLGDDGSIELSRHIVVVPLDEELVLNVILFHGDDHEDECFEFVLTNYDEESSFKEGRFELQVKVIWTGVVRTGEHKMWESTGRNRMLV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0002300 | OsLiXu_08g0002300.02 | Chr08 | 1959688 | 1962186 | + | NAM | ||
| CDS seq | atggcggacggggccaacaaagacggtgggggttcggctgcgggggagcggcccatggttgcaatcaagcgcaagcgggagaaggtgcctgggcttgccgaagatggagattcttccccttctagcgctaatcgatccgtcgacatggaggtggaggagaaattagattactcttgtgctggtgccgaagaagatgttagtagtggatgcagcattgagatggaggatgtgggtgagcagcggcaagtggagcccacatgggaggataaggtgctgagggttcttcacattgttcgtcgcaatcagtttgctgaatatgaccccaaggtaggtgggatcgtatacagccgcttctgcatccacaacatagccttattcgatcttgacaaagagtcaacgattgggcctgggccaccaattaactcgctcgatccctctgaatattggtggctggatgactcactgaatatcatagcgatcaaggttgccgagtccgacgtgggttaccctgtcagaatatatggcaccgttcttgcgagggatcagcaagactacagatgcgtctatttgttcaggcgaagcagggacaatccccaactcatcacctcaccggaggatagtctaaccttgacaggcccatatcgagcacttgcttcaaaagatattataattttcgagttcaatttgaagattttgggcgatggggatgttgacagagatttcggcaaaggtgtgatagaacacagttgtatccgtcacacaaagaaactcatgactttagatctaacaagttggttgagcaaaatagatttggtttatacgcctgttgattatgctgtagaagcttcacttgcagtcaatattttggatgggccatctgatttcaccggtaaagtgattgcttggactagtggaaataaggacaatgagatcgttctacatgatacccaagtgacaggctctccaacaaaacttggagatgatggatctattgagttatctcgtcatatagtagtagtcccattggatgaagagctagtgctcaatgttattttgtttcatggtgatgaccatgaagacgaatgctttgaatttgttcttaccaactatgatgaagaatctagtttcaaagaaggccgttttgagctgcaggtgaaggtcatctggacaggcgtagtgagaacgggagaacacaagatgtgggagagcacagggagaaatagaatgttagtgtga
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| Protein seq | MADGANKDGGGSAAGERPMVAIKRKREKVPGLAEDGDSSPSSANRSVDMEVEEKLDYSCAGAEEDVSSGCSIEMEDVGEQRQVEPTWEDKVLRVLHIVRRNQFAEYDPKVGGIVYSRFCIHNIALFDLDKESTIGPGPPINSLDPSEYWWLDDSLNIIAIKVAESDVGYPVRIYGTVLARDQQDYRCVYLFRRSRDNPQLITSPEDSLTLTGPYRALASKDIIIFEFNLKILGDGDVDRDFGKGVIEHSCIRHTKKLMTLDLTSWLSKIDLVYTPVDYAVEASLAVNILDGPSDFTGKVIAWTSGNKDNEIVLHDTQVTGSPTKLGDDGSIELSRHIVVVPLDEELVLNVILFHGDDHEDECFEFVLTNYDEESSFKEGRFELQVKVIWTGVVRTGEHKMWESTGRNRMLV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0002300 | OsLiXu_08g0002300.01 | Chr08 | 1959688 | 1962186 | + | NAM | ||
| CDS seq | atggcggacggggccaacaaagacggtgggggttcggctgcgggggagcggcccatggttgcaatcaagcgcaagcgggagaaggtgcctgggcttgccgaagatggagattcttccccttctagcgctaatcgatccgtcgacatggaggtggaggagaaattagattactcttgtgctggtgccgaagaagatgttagtagtggatgcagcattgagatggaggatgtgggtgagcagcggcaagtggagcccacatgggaggataaggtgctgagggttcttcacattgttcgtcgcaatcagtttgctgaatatgaccccaaggtaggtgggatcgtatacagccgcttctgcatccacaacatagccttattcgatcttgacaaagagtcaacgattgggcctgggccaccaattaactcgctcgatccctctgaatattggtggctggatgactcactgaatatcatagcgatcaaggttgccgagtccgacgtgggttaccctgtcagaatatatggcaccgttcttgcgagggatcagcaagactacagatgcgtctatttgttcaggcgaagcagggacaatccccaactcatcacctcaccggaggatagtctaaccttgacaggcccatatcgagcacttgcttcaaaagatattataattttcgagttcaatttgaagattttgggcgatggggatgttgacagagatttcggcaaaggtgtgatagaacacagttgtatccgtcacacaaagaaactcatgactttagatctaacaagttggttgagcaaaatagatttggtttatacgcctgttgattatgctgtagaagcttcacttgcagtcaatattttggatgggccatctgatttcaccggtaaagtgattgcttggactagtggaaataaggacaatgagatcgttctacatgatacccaagtgacaggctctccaacaaaacttggagatgatggatctattgagttatctcgtcatatagtagtagtcccattggatgaagagctagtgctcaatgttattttgtttcatggtgatgaccatgaagacgaatgctttgaatttgttcttaccaactatgatgaagaatctagtttcaaagaaggccgttttgagctgcaggtgaaggtcatctggacaggcgtagtgagaacgggagaacacaagatgtgggagagcacagggagaaatagaatgttagtgtga
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| Protein seq | MADGANKDGGGSAAGERPMVAIKRKREKVPGLAEDGDSSPSSANRSVDMEVEEKLDYSCAGAEEDVSSGCSIEMEDVGEQRQVEPTWEDKVLRVLHIVRRNQFAEYDPKVGGIVYSRFCIHNIALFDLDKESTIGPGPPINSLDPSEYWWLDDSLNIIAIKVAESDVGYPVRIYGTVLARDQQDYRCVYLFRRSRDNPQLITSPEDSLTLTGPYRALASKDIIIFEFNLKILGDGDVDRDFGKGVIEHSCIRHTKKLMTLDLTSWLSKIDLVYTPVDYAVEASLAVNILDGPSDFTGKVIAWTSGNKDNEIVLHDTQVTGSPTKLGDDGSIELSRHIVVVPLDEELVLNVILFHGDDHEDECFEFVLTNYDEESSFKEGRFELQVKVIWTGVVRTGEHKMWESTGRNRMLV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr08 | 1959802 | 1959913 | + | OsLiXu_08g0002300.01 | OsLiXu_08g0002300.02,OsLiXu_08g0002300.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.610349 | 0.711910 | 2.199457 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0134900 | RBH | 1.847746 | 2.290126 | 9.427836 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g04090 | RBH | 1.225544 | 1.510718 | 2.400766 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0134900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0002390 | RBH | 1.056478 | 18.765501 | 6.803910 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0002440 | RBH | 0.431119 | 2.444398 | 4.576127 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0002430 | RBH | 1.135164 | 5.253188 | 10.125706 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0002400 | RBH | 0.099614 | 0.550724 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0002250 | RBH | 8.983386 | 23.284273 | 17.040997 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0026600 | SBH | 0.0085765 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0002130 | RBH | 0.399821 | 0.752612 | 2.585552 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0033200 | RBH | 4.8796245 | 10.615449 | 14.4794995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0002260 | SBH | 0.042858 | 0.059230 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0002260 | SBH | 0.000000 | 12.749482 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002040 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0002310 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0002210 | RBH | 0.697295 | 3.727603 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G002230 | RBH | 0.247554 | 0.935398 | 0.674558 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002130 | RBH | 0.000000 | 0.000000 | 2.528358 |
