Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0028250 | OGI:07079240 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:29011628-29013816 | ||||||||
| Gene Symbol | DLN196, OsDLN196 | ||||||||||
| DNA seq | cagagattggcctaccttacgtaatagtattattattatttttagaagtatatgacaaaaataacttcatctaatataatacacggttacagtaaatcatgcgttaaaaaaaactgcctcccgatcagtctctacatgaactagattacatatattcagagaaattaaagcaccttccttattgatcatacatggcgatcgatcgatgcaccaccaccatctttggcttaatttcatcgtgctcatagcaagaaatgaatcacttgcccagttgctgcttgctaattttctactacctgcttttctccatcgatcagttaagttggttcagctccagcctgcaccattcagatcgatgttttcgcgcctgtgagagtgggacgacgacctgccattgatgctgaggtccagctccgacgcctgcagcgtgctcatctcgcggcgccgttcatccgaacacgatcgtcgcctgctcggctcgttggggaacagcaggtagtggtgctccttgcctgatcttgctgctgccggctcaaatggcggcaagccgatggacaggatgtcctgctctcctctgtggccatgagagcgcgagtgatgcgagccctcgcagtcgcaggtggtcaggcagctgtccaccgatccatcgccgacctgctgctgctgctggtgatagtgaagctgggtgtgctcgttttggaggcgtttcgatgaggaggcgtttgcagttgcagcagtttctgctacggcgatggtgccgagtgcctcctgcgccttctccagcactgactgcaggtactttccttgggcttcaatccgaagctgcaggtgtctttgtaccttttattttcaggatccatgatcacttataaatactactgatttatttattaggagacacaagactattgctatgcattgttacatatattccatcgagaaacaactgaaagatttttatatatacctctagttgttcatgcagccgtctctgcacctcaatttgcatctggagggcttcatttatgtgcatagaactgctaaaaagattatgaaatatacattacattctgatgtttgatgtttctattcatgagagaaaaaattaactttatttgcttcttagttacctgtttgtctgagtctctaggtccaagtgactagccggtgatccatttccttcacatggtttatctatctctgtcgtactacaacctaagactgaaaacgtgaaagcaagtttactatctcgcttattactaatactgataatcaagctacttcagagttcagaatcatgtagcacttaccaccttgtgcacgggaagcattggcttgagattgaagattcttgctaagtcggtatttctacgataaaagaagccaacttagtttctatcttcaagtcacgaataatgctagacacctatagtttaaacatatttcaaaatgtacctgaagatgactcttaagatggtaaagggttaatccaggaattcccatgagcctcatgattgttttcggcgtcgcctctgaagaagtttcaagtgtagccattgtaagatatgcaaatttaccattcctctgctgcttcaaagcatgaatgattaattaagttttgaatactcactgtccggccctcccagctgatttactgcttccacaaaacgctcatgcaactctgatgtccattttaaccgaggtttagcgtcggtcgagaggacaagccctgatgatgaatctgctccgccttgcaggagaaattgcttctccggagacaaacccggccttgaagacaggtgctggctatcactctgaacctgttgctgatgatacatcatctgccatcaaagatgtcatgttactaatttgcagatatcatcttgtgtgagcataagcatatgatacgaaaggcctctcttccttgcatggttcaaagaaactaacacagtagtacatacagacctgttcagttccagtcatgcactgaaatgtctgtctgcttgtagtaggctgcacatttatcagtagtgataagatcctctgcagcctttttcagtgcctctatttgtagtaaccaaagacttgattggattatgtgtgtatggtcttctgggagtgagacaaccttggcttcttcagactatctgcctctccaatgactagccgctgctgcctctgctcatgtc
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| CDS seq | atgactggaactgaacagatgatgtatcatcagcaacaggttcagagtgatagccagcacctgtcttcaaggccgggtttgtctccggagaagcaatttctcctgcaaggcggagcagattcatcatcagggcttgtcctctcgaccgacgctaaacctcggttaaaatggacatcagagttgcatgagcgttttgtggaagcagtaaatcagctgggagggccggacaaggcgacgccgaaaacaatcatgaggctcatgggaattcctggattaaccctttaccatcttaagagtcatcttcagaaataccgacttagcaagaatcttcaatctcaagccaatgcttcccgtgcacaaggtgtcttaggttgtagtacgacagagatagataaaccatgtgaaggaaatggatcaccggctagtcacttggacctagagactcagacaaacagttctatgcacataaatgaagccctccagatgcaaattgaggtgcagagacggctgcatgaacaactagaggtacaaagacacctgcagcttcggattgaagcccaaggaaagtacctgcagtcagtgctggagaaggcgcaggaggcactcggcaccatcgccgtagcagaaactgctgcaactgcaaacgcctcctcatcgaaacgcctccaaaacgagcacacccagcttcactatcaccagcagcagcagcaggtcggcgatggatcggtggacagctgcctgaccacctgcgactgcgagggctcgcatcactcgcgctctcatggccacagaggagagcaggacatcctgtccatcggcttgccgccatttgagccggcagcagcaagatcaggcaaggagcaccactacctgctgttccccaacgagccgagcaggcgacgatcgtgttcggatgaacggcgccgcgagatgagcacgctgcaggcgtcggagctggacctcagcatcaatggcaggtcgtcgtcccactctcacaggcgcgaaaacatcgatctgaatggtgcaggctggagctga
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| Protein seq | MTGTEQMMYHQQQVQSDSQHLSSRPGLSPEKQFLLQGGADSSSGLVLSTDAKPRLKWTSELHERFVEAVNQLGGPDKATPKTIMRLMGIPGLTLYHLKSHLQKYRLSKNLQSQANASRAQGVLGCSTTEIDKPCEGNGSPASHLDLETQTNSSMHINEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQEALGTIAVAETAATANASSSKRLQNEHTQLHYHQQQQQVGDGSVDSCLTTCDCEGSHHSRSHGHRGEQDILSIGLPPFEPAAARSGKEHHYLLFPNEPSRRRSCSDERRREMSTLQASELDLSINGRSSSHSHRRENIDLNGAGWS |
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| Function | Myb-related protein 1 [UniProtKB/Swiss-Prot:Q9FK47] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0028250 | OsLiXu_07g0028250.01 | Chr07 | 29011628 | 29013816 | - | NAM | ||
| CDS seq | atgactggaactgaacagatgatgtatcatcagcaacaggttcagagtgatagccagcacctgtcttcaaggccgggtttgtctccggagaagcaatttctcctgcaaggcggagcagattcatcatcagggcttgtcctctcgaccgacgctaaacctcggttaaaatggacatcagagttgcatgagcgttttgtggaagcagtaaatcagctgggagggccggacaaggcgacgccgaaaacaatcatgaggctcatgggaattcctggattaaccctttaccatcttaagagtcatcttcagaaataccgacttagcaagaatcttcaatctcaagccaatgcttcccgtgcacaaggtgtcttaggttgtagtacgacagagatagataaaccatgtgaaggaaatggatcaccggctagtcacttggacctagagactcagacaaacagttctatgcacataaatgaagccctccagatgcaaattgaggtgcagagacggctgcatgaacaactagaggtacaaagacacctgcagcttcggattgaagcccaaggaaagtacctgcagtcagtgctggagaaggcgcaggaggcactcggcaccatcgccgtagcagaaactgctgcaactgcaaacgcctcctcatcgaaacgcctccaaaacgagcacacccagcttcactatcaccagcagcagcagcaggtcggcgatggatcggtggacagctgcctgaccacctgcgactgcgagggctcgcatcactcgcgctctcatggccacagaggagagcaggacatcctgtccatcggcttgccgccatttgagccggcagcagcaagatcaggcaaggagcaccactacctgctgttccccaacgagccgagcaggcgacgatcgtgttcggatgaacggcgccgcgagatgagcacgctgcaggcgtcggagctggacctcagcatcaatggcaggtcgtcgtcccactctcacaggcgcgaaaacatcgatctgaatggtgcaggctggagctga
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| Protein seq | MTGTEQMMYHQQQVQSDSQHLSSRPGLSPEKQFLLQGGADSSSGLVLSTDAKPRLKWTSELHERFVEAVNQLGGPDKATPKTIMRLMGIPGLTLYHLKSHLQKYRLSKNLQSQANASRAQGVLGCSTTEIDKPCEGNGSPASHLDLETQTNSSMHINEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQEALGTIAVAETAATANASSSKRLQNEHTQLHYHQQQQQVGDGSVDSCLTTCDCEGSHHSRSHGHRGEQDILSIGLPPFEPAAARSGKEHHYLLFPNEPSRRRSCSDERRREMSTLQASELDLSINGRSSSHSHRRENIDLNGAGWS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.151959 | 0.366343 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0685300 | RBH | 1.200603 | 0.317132 | 0.566861 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g48596 | RBH | 0.711299 | 0.214383 | 0.146664 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0685300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0028090 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0028140 | RBH | 0.081102 | 0.0 | 0.603577 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027930 | RBH | 1.060761 | 1.427926 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0027720 | RBH | 0.090637 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0028030 | RBH | 2.323400 | 0.000000 | 5.005016 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0473100 | RBH | 4.152142 | 3.9180905 | 0.2053345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0028460 | RBH | 0.461018 | 0.461773 | 0.508292 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0487000 | RBH | 3.000317 | 1.1141595 | 0.959167 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0027750 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0028200 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027920 | RBH | 0.0 | 12.034788 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0015880 | RBH | 2.684809 | 2.196326 | 2.024620 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027810 | RBH | 0.225031 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027880 | RBH | 0.000000 | 0.561332 | 0.444909 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0027630 | RBH | 0.427699 | 2.000309 | 2.977400 |
