Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0026000 | OGI:07060370 | 13/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:27250028-27255466 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttatatgcagcgaaggccactgcagagcttgcaaagagcctccgggtcatcactgttcctgggacagtgcagcttgtatcttcacttctagacattcatggcaaaccgaaaaagggaaacccacttctggatgtagatggtgaacaggagggaaagcaagccccaattcacaatacatcagaaagccaagaggataggcatgatgcagctgatgaccaatgtcaaattcaagagcgacatggggacactgataacttgctggagacacaaacccgatcaacccatatcaatgaacgtatatccttcgtaatcagaacctggcagcggatttcagagtactggtcaatccccaaggagaaaccgttgacagaccacgatcttcttcctgcactggggatgtcgattgttaacaaccttgctagtggtgatgaaaataactgtgtggaaattcatagagaaactaacctcatctggaagatcataggattcacaagcttcagaggtgacacaacaactagcgaggcacaacaatgggtcctggtgaagtcatcagtgaaggtgttgcagaggctgacaagcattggaggggaaattggcatagcactcaggtataagatatcaaaacatcccttcctattaagaaacctcgcagatatcttgggaaacactagcagccatcatgaattaagtaaacttgttgctggaatccttagaaatcttgccattgatggtgacacaaggcaggagatagggcaaatgcaggtgctcataaccaggctgatgaaggcattcatcaaatcagatggaacctctagcacaaatgttgattgctttctaccaaaggtagctgggcaagcactggcaatgttggcaatggataatgtgcataactgcttagttatgatgaaggaaccagagctcattaataagttaaaaaatatgatcttgatccctgatgagaagtacatatatgtggcagcaagtttgttgcgtagtatgtgccagcacgcccaagccaagctcacagaatcagacctgaaagagttatctcacactttgcgagaggtgagccttgctacttcatgcaatagattatagatgcagtcaatatttctggtggataatattctttgttgtttgcatattgtctttatgctgtctgatgaaatttcaccaatccttatttattaaatggggcatttatttactagtattatctgaaaaaaatatttaatactccctctgtcccaaaatatcgtggtgtctagtactaggttgctatattttgggatggagggagtagtaaactggagtgtaatgtactgtgctttgctgaattatcgtagtgctaggtgcctaggtggtgtctcatctagtactcatgctacattatattatttccactacaggtgttggaaagaataatgaatgtagaaggggcagaactagagatcctcattggcctaagttcacaaatatgcaaagttattcctgaagaatttgcccaaaaactggagggtggacaaattaagcgaaggtttgtgaagaggctagttgatgcactcaatgcaaatatcaacccaggtgctcattgtcctgggatcaggagggtgatacttgagcaatccatatacatgatggagtgcaattccctctatgctagttgtttcaatgaattccggatgatggaagcactgtcaatggtagaagagatgccctcaaggactgagaactactggattttcttgggcggcgcaggtttcatggaatacaacacacctctctttgctcttgtggatagagcaaaagaaatgttgggtgtccagtgcttgcaagacatcagcagttccaactgaaaaataatgtagataatttcgcaattgcaactgtagtgagttaatgaattgttcattgtaatccagatgccacaaatttatcattgatgctgtggtgatgcaaaaagaacaaacagaaaatgctggtgttggagtcagaagaccatgcttattactaacacacggtaaaacaagtgaatgtgcatatgatcttattagatgagtaaaagttattgtgattgtaccacattagtcctgcattgtaatctatttagcttctgacgatttatccaattatgatctcttggtgtcatctcaaatcaacattattgatgcttgagatgactgcaatccctatgccaggttctagcatgtcccagctttggcaccgtttatattcgtaaaacctgtgatttattttgacacctacaaactgggtttttcgccatagcgattagcctcattcaaacacaactacacccttttcaacgacactcttgagaatctctccctgctcgaacttacactctcagacagactcttcacctggtccaacaagcgacttaatcccacacttacccgtatcgacagagtcttcttcaacttagcctggaatgatctgctccccaattgctccctcacttcccaaacaagaacaacctctgatcacgtcccgctccttctttccatccaaaccaaaatccctaaaagcaagatcttcagatttgacaactcggccctgctgaatcctgactttcttccctacgttctatcgcgctggtccctcccagatccacataccgaagcggcgggcgatctcaatctgaatctcaaaagggtaaggcagagagcaaaaatctggaaacatgatcacagattcatccaggcttgcagaaatgattgtaactttgtaattgattacattgacttccttgaggaattcggcacctgctcctcagctctgatggaattacgctctcttttacaacttaaactttctgatctcaatcagcaagaatcgattttctggaaagaaagagcaaaagtcaagtggatcaaattcatgggaacaaactctaaattcttccatgctcatgcctctgtaaagatgagaaagaatgcaatcagagggctgctggtggacaacaactttgtatacgatcactcaaccaaagctcagattctgtacaacttcttttctgactctttgggagccagtaaagcaactcattgggactttgatcttctggagttatattcaggccacccccagattaattcagataatatctctgggctcttcgagttggaagaaataaagctggctgtgatgcaaatggacaaggacagtgccccaggtccggatggaataggccctagtttctatcaggctgcctggaatcttattttccctcaggtcctcaacctgatgcataatttctactacaacaaccttgacctggacaagatcaacagggcatacattgtgctcatccaaaaagcaaggaaaggcgcctgcaccttgcaacttcaggccgattgccctgcagaactgctcgcttaaaataatctcaaaggtgctcagtttcagactgcagaaagaattaagctccattatccagctagaccagacaggttttctcaaggggaggcatatttctgaaaccttcattcatgcaacagaattagtccagtgctgtcataagagaaaagcccctgcggtgatcctaaaattagacttcgccaaagcttttgactcagtccagtgggacagtttacacaaaattctatactgcagaggattcaatgattcttggaacacttgtatcaaaatgctcctcgcttctgccagatcctctatcatcctaaatggtgtgccgggtaattggatctcctgcaaacaaggacttcgccagggggatcctctatccccttatctgtttatcattgtagctgatgtgctccaaactctcatccggaaaagccagctacgacatcctctcaacccgcagatgactccctccacacttcaatatgcggacgacacattaataatctgcaaagcctcctcccaggatgtcgcccttatcaagcggattcttgatgatttttcttctgcaactggactggagataaactactccaagagtaccatggtgtgcattcatgtcccccctgaagatcaagtccagcttgccaatgtgctgggatgcagacttgaaaacttcccgcagacatatctgggacttctgctgtccacaaccaagctaaacttcgatgcctttgctcctgtgatctcaagagtggacaggttccttgcaagctggcaggcctccttactgaactacgcagacaggatcatcctcattaatgcaattctatcatctctccctacctacgcaatggcggctatggagctcccgaaaggagtatttgcggcgattgacaaaagaagaagagccttcctttggactggtgatgattcgtgctctggttcaaaatgtttggtatcctgggatgaagtctgcactgacaaaaaattcggtggcctaggaattaaggaccttgctaaacaaaactcctgtttactgttgaaaacctgcacaagcttcacgtctcttctactccttggaccatctggctgtggaatgaaattcctcaagacaagttgctccctgattcaaattgggaccccacgtccgtagcctaaccaaactcctgcctctatatcaagttaacacaaaatgctgcgttggatctggagacaaaacttctttctggttcgacacttggatctccgacattcctcttgcttctaaaatgccggcgctgttctcccactgcctgaagccttatgtgtcagtaaaagaaatgctcagttcatatgatcacctgtggcagcctaggctcacagcagctgcttcacaagatttggctcatctctctacgctgcttcaaaacttccagctgagcgcagaacaagacagcagatcacttaccttccaaacaaatcaaaatacattctcctgctcaaagctttatggaatcctaaactcaagaccaacctgctgttcgaattggaaattcgtttggaaaaacaaggcccctccccgggttcagttctttgcttggttactcacgaaagacagactgccaatgagggtgaatctcaaaaagaaaaacatcactccctccgatgtctgcgagatttgcaagattgctccagagactgcggagcaccttttccttcactgctcggtggcaaaggccttttgggacctaactcatgcaaaccccaacattccctctatgaaggctctcaacctcatccagccgcccagctgcattccatcggagcagtacaaatgcttctaccttctttgcttctggagaatctggaaacacagaaatgaggtagtctttcagaatttgcttccatgcaccacaagactgcttaaagcatgcaaagaagaatcgtctacgtggagtttccgcctcaacgactccgccagaagctccaccgatgcttggaggaacatcttcacttcggctttgctcccttctctttctgcggcttcttagtggccgctagatccctgtccat
More
|
||||||||||
| CDS seq | atggacagggatctagcggccactaagaagccgcagaaagagaagggagcaaagccgaagcagtgggagaacagcgccggcattttagaagcaagaggaatgtcggagatccaagtgtcgaaccagaaagaaattgagatcgcccgccgcttcgttggaactgctgatgtcttgcaagcactggacacccaacatttcttttgctctatccacaagagcaaagagagatacaagctgcactgtcccaggaacagtgatgacccggaggctctttgcaagctctgcagtggccttcgctgcatataa |
||||||||||
| Protein seq | MDRDLAATKKPQKEKGAKPKQWENSAGILEARGMSEIQVSNQKEIEIARRFVGTADVLQALDTQHFFCSIHKSKERYKLHCPRNSDDPEALCKLCSGLRCI |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0026000 | OsLiXu_07g0026000.01 | Chr07 | 27250028 | 27255466 | - | NAM | ||
| CDS seq | atggacagggatctagcggccactaagaagccgcagaaagagaagggagcaaagccgaagcagtgggagaacagcgccggcattttagaagcaagaggaatgtcggagatccaagtgtcgaaccagaaagaaattgagatcgcccgccgcttcgttggaactgctgatgtcttgcaagcactggacacccaacatttcttttgctctatccacaagagcaaagagagatacaagctgcactgtcccaggaacagtgatgacccggaggctctttgcaagctctgcagtggccttcgctgcatataa
More
|
|||||||
| Protein seq | MDRDLAATKKPQKEKGAKPKQWENSAGILEARGMSEIQVSNQKEIEIARRFVGTADVLQALDTQHFFCSIHKSKERYKLHCPRNSDDPEALCKLCSGLRCI |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025910 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025960 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025790 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025850 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025950 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0040060 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025590 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
