Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0025940 | OGI:07060390 | 7/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:27199597-27202087 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gccggaatgaccgaaggaggtcattcaatgcaattaagataggaagaaaatattacaagaaaagttttacatcgacagctggctgtcgaggaaggatgtgcaccagagcacacgccccgaaccatgtgccaaccgtccaaacacacgctacagagagggaagccaaccaccgaacggccatcgctatgcgagaccgatcgccaccgggccaacaacaccactatgacacgaagactctaaaacgacgccctcacaagggtcgcgacgccgaaagacgccgtcgtcatccgtccaaacactggacaaggtttttacccagagttccttgccgagggaggaggggtatctcaacaatgccctcaggatggttaccatgcctgaaggcgtagtcaccgttggcccaaagaaattaggctaagctttcgctcggaaccccttaccgccgtggtccatcgcccaatccgaatccaccatctaaacatcggcggcacatggcttccaccacacccgaccgatgcccctccgcgattagcttccagtcctgccaacgacaagactgccaccacaccgcaccgacgccccaccgtcggccgacttcatcgaaccaccatccctgagagctggcctaggacccctccatgccaccacccgccggcctcctcgccagatctggctgaaggagaacctgggactgggtggcattgcttcggcatcctgagtttcccccgctgacaagtgacaacctgccgtctcaatccaacctagaaactccctgcaaagaaggggggagctccagaaagggcgagggtgccgaccagcaacgaagaagacgacccacagccgccagctccctttgcactaccatctgagcctacgccgatgccggaaacgctgccgctccggcttcggagcccccccacggtcgccgcgtcttgggctgccactaggcggccaagccgagcggccgtcgccgagccgccgctgccgcacctccgcaccgacctccgtgctgcacttcggccaccgcgccgacgcaggctctactccggccgatgcgtcgacatcgtgccaccgacacagccggcgcgccgccaccactggccgccgcgccaccagccaccacatgggcgcaagcgacactccggctgccgcgtcaccgacgaagccggcgcgctgacagcccgagccgccgccacgccagagccagaccgacgcccagccaccgcgctgccaccacgggccaccgcgccgccgcagtggccctgccacggtcgccacgccgtcgctcgagctcgcgccgtcgccgcaccgaccagattcgggggtgggagggccggatctaccgcctccacacgatgccctgccatcttcgcctccaaccgctgaggttgacgctgtcggctttgccccaacctcctcgtgccaaggaggatgccgccgagctcaactggcctcgccgccgccttcccagctcgccggcagcacgccagcaagctccggcggtggcgaggtggaggagagggccgggatgcggcggcgcgggcggctagggtttcgcctcccgagccgcccacccgtgttacttgttagcacggggtaaaaaactggaatgtgcatatggctttagaaagaaacatgattttcgttcgagatgagcaaacgttatttgtaattttacctcattagtactgtttgtctgcttttctactgatgatttgtccaaatatcatctcttaagagtgaccaatgcataataattggttagatataggtgtttaaggtgattgcagttcctatgccaagttctagtgcgtcccgcttttggcatcaaattttttggtaaaatctttgggttattttttatacctggaaattatttgctatcaattaatgtgaactcaactgaacatccatgaaatatacaaatcatgcgcccatgtcaaccgtgcatgccatgacatctgactctagtttagtacagggccactaaagtcatgtacatggccctattgagaccaaaactatgctgtactggagctttctactaactcagcattgcgattgacctagtagtaaactagcaacccaagagcactcccaagattccaaatccctaagcagagcagtcgatttcagtataaccatcactctgttctttctgtaagactaagagtgtaaacatcagttaccttgccaagaggagagggggcacggaggaagagatgaggcaaaagggtgatcggatcgggacctgtttgaggaatggcctggaggggattcgccggctcgccctcgccacgtatgtcggctgctcgtctccaccgaagatcctcgcccgccgcccccgcctggtgccgtcgcgcctagctggtcgccttgtcggctgctttggttgcccgccggagatcgtcgcccagccagcaccgtcgcgcctagcagcctggcaggttgccggccgcctcgcgttagtcgatcgaggcagccaggccat
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| CDS seq | atggcctggctgcctcgatcgactaacgcgaggcggccggcaacctgccaggctgctaggcgcgacggtgctggctgggcgacgatctccggcgggcaaccaaagcagccgacaaggcgaccagctaggcgcgacggcaccaggcgggggcggcgggcgaggatcttcggtggagacgagcagccgacatacgtggcgagggcgagccggcgaatcccctccaggccattcctcaaacaggtcccgatccgatcacccttttgcctcatctcttcctccgtgccccctctcctcttggcaagtaacacgggtgggcggctcgggaggcgaaaccctagccgcccgcgccgccgcatcccggccctctcctccacctcgccaccgccggagcttgctggcgtgctgccggcgagctgggaaggcggcggcgaggccagttga
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| Protein seq | MAWLPRSTNARRPATCQAARRDGAGWATISGGQPKQPTRRPARRDGTRRGRRARIFGGDEQPTYVARASRRIPSRPFLKQVPIRSPFCLISSSVPPLLLASNTGGRLGRRNPSRPRRRIPALSSTSPPPELAGVLPASWEGGGEAS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0025940 | OsLiXu_07g0025940.01 | Chr07 | 27201040 | 27202087 | - | NAM | ||
| CDS seq | atggcctggctgcctcgatcgactaacgcgaggcggccggcaacctgccaggctgctaggcgcgacggtgctggctgggcgacgatctccggcgggcaaccaaagcagccgacaaggcgaccagctaggcgcgacggcaccaggcgggggcggcgggcgaggatcttcggtggagacgagcagccgacatacgtggcgagggcgagccggcgaatcccctccaggccattcctcaaacaggtcccgatccgatcacccttttgcctcatctcttcctccgtgccccctctcctcttggcaagtaacacgggtgggcggctcgggaggcgaaaccctagccgcccgcgccgccgcatcccggccctctcctccacctcgccaccgccggagcttgctggcgtgctgccggcgagctgggaaggcggcggcgaggccagttga
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| Protein seq | MAWLPRSTNARRPATCQAARRDGAGWATISGGQPKQPTRRPARRDGTRRGRRARIFGGDEQPTYVARASRRIPSRPFLKQVPIRSPFCLISSSVPPLLLASNTGGRLGRRNPSRPRRRIPALSSTSPPPELAGVLPASWEGGGEAS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0025940 | OsLiXu_07g0025940.02 | Chr07 | 27199597 | 27201189 | - | IsoSeq | ||
| CDS seq | atgtggtggctggtggcgcggcggccagtggtggcggcgcgccggctgtgtcggtggcacgatgtcgacgcatcggccggagtagagcctgcgtcggcgcggtggccgaagtgcagcacggaggtcggtgcggaggtgcggcagcggcggctcggcgacggccgctcggcttggccgcctagtggcagcccaagacgcggcgaccgtgggggggctccgaagccggagcggcagcgtttccggcatcggcgtaggctcaga
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| Protein seq | MWWLVARRPVVAARRLCRWHDVDASAGVEPASARWPKCSTEVGAEVRQRRLGDGRSAWPPSGSPRRGDRGGAPKPERQRFRHRRRLR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.115709 | 0.811998 | 0.361761 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g45790 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025840 | RBH | 0.0 | 8.462954 | 1.585668 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025900 | RBH | 0.0 | 0.0 | 0.684135 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025730 | RBH | 0.0 | 0.000000 | 0.520108 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025890 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025550 | RBH | 0.000000 | 0.0 | 0.306926 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
