Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0025870 | OGI:07075380 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:27107056-27114598 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagtcatatatttcagccaaaggttgctcaattagatctcctggcgaacagctagtcaaatgcatttcagtacacaaaaagtctgcattttgcacgtggcactatgaccaagtgtgatgagcagattgaccaagtggcgcagccagtagccgcgtcggccaccccagcggcggtggaatgacctcgttgccggcggcctcgacccgaccaccgtcttcctcgtctccagcgtcgcgtccttcatgcggcctgacgaaccaatcgatctgagaaagaagtaggggcaatttagcattttcgtgcagccgatctgtgaaaaacaaataaaaaactatattaaaaatggcacaaactccccaaaagtagcgttttatcaagggtgacaatgacaatgcagtaaatggcattttatcgaatccaaacttaaagaaaacagtggtgtatgattaattttttttctctcttttccacccctctgttagtctaaattctctctgcaaaatagcctacgaagaaatccaaaaacaaaagcaaggaatcaattccgtaagatcaccagggataacattttTTAAAGCAAAAGCAACATCTCCAGGTTTCCAAATAACCCAGCAAACAAATGCAATCGCAACAATTAAAAAAGTTTGTAGGAAAGCTACTCGGCCGTTGaccaaacaaattaatgagaagtattctgtacaggataaaagccaaatattaaccaatcatatccacacacacatcttcctaaactacattattttaatgacactgagaagtcaaaaacatcgagtaaaaaatgatcagtaaatactaaccgtgaagtgcagtcaactgtctctctctttgtaatcctcgctctatattattgtgaaagcatggaggtcgagctagccgccgcgcggcaaactgcaaaaaaagtcgttgaagaaagatggcgcgcccagcgggcgacgcagcaactcggcaacggtgcaaggcgccgccagagccaccggagaagcacctgaaccgcttcgtccgcatcatcgcgttcatagagagggccggcaacggcctcggtactctggtattcacatgggcaaccgtcgtcatcctcggtggcttctcgacgatgctcaccacacgggagttcaattgcgcaacgttgctagctctcctggaagccacaaggtcagcaatcaacttccatttttgttttactgtcaaaagcataaaaagagagagattagttcatatagttcaattgtactgcaggatgttcagccaaaacagtaggctagagtaccaattcttcttccggacaaggggagctttcaggcgtcctcgcctgatcaggttgattctgattgtatgcatggctgaggccatggtgtgcgtcatggcaaagttcagatttgcgaatttcagattggcaaagttccgatggagtccagctccagtgtatcatctaggtccggtaaaggtaacaccgtttataaccctgggtatgaccatgtccctgtttgtagttgccaagcttgtatgcccagtgattcttaagctgttcggcgacccacaactcagagctgtatcactatggagtcccctggctgcaatcctgttgttggtgccttgtctgttcctggaaacatcaataccccatccagacagattgcctgcattaaggaaatatttcgcattgctccttacggcagtgatcatagtgacaataaccaagttgcaatttcgatgcataacctcaatagtgaatagtccttgttgccgcaagatgtcgtttttgcgtccagtgattctgttcttgtgcatgtgcgctgtaatagcgatattgggaagcctgtattcggactctgcctatatagtagcacccatggccttcttcctgatatttgctttggtattagagtcatttggcaacttgcagataccagcagcagtcgtacgtgttgtgatagcaatgatacaaccaacaacggtcatatgtgtccaaagtattttgacagcagtgacgcagcgaacatcgggtatctatatcggcattccaaagaattgcaccagagaacatacatatcctgacggtactttaggagacaccaagaaaaatgtcaagttctctctagacgtcttctatgtaatagtccttacccaaggggcactctacattgtggcatgcgttctcgagatcttttcattcatccccaagatacacttagtccgtcaaagcaggttcagacggaagtggggaaggaaatgcgtagacatgtactattcgtacatattcgagcaatgtgtttccggtggtgcacttgctccaagaatcatggaactgaccagttttgccatggatttcacaaactcaaactcacccagcaaccagctctatgggatccaaatgctgcacagctttctaaaaaggaagcgcaccaaggcacttctgctcttgagactcaccacttccacagagacattgaatacactgatcagcatgttgggctggacaagtccagaggatgcgcaagttagattgtttgccacaaaggtcatcgtcgatctttcaaggagcctccaaattattggtatccctgggtcaatgcagaacatatcttcacttctggacactgaaaaccaattgagacgacgaaatccgctactttacacatattacagccaggagggaaaacaaggtacgattgtggacacgggtgatggccaagagcatattgaccaagatcatcctcacaacaacaaccgacttaactcctggatgcttggttgctggcaattgatttcaaagcgcaaaaaaacttcaaaggaggagacattcatagagcatgatctccttcctgtactgggaatgtcaatcctagagacacttgcagaatgtgatcctgacaactgtgcggaaatcagcagagcaagagacctcatccagaagattatagggtacactaacgagacgcagccaaaaatactgaaaggttcatcactgaagttgctgacaaggctctcaaacactggtggggaaattggtataacccttcggcagaagatgtcagatcatcccttcctgttgagaaacctggcagaaatcttgggagacactgagggaagccaagaacataagaagctggcagcagagatcctcagaaaccttgccatcaatgggaacagcagggaggagataggttcaatccgagtgatcattagcaggttgatccaagcatttcttgcccaacatccatcatcaaacacatattctgatcggtcactacaaattacggctggtcaagcactagccatgctggcaatggaaagtgtcaataattgctcagcaatgttgaaggaaccaggatattcattcattagagagctcactgccatgatccgagatgacatacacaaatacatggccgcaagtcttctgcaaaatctatgcttgcatgctcaatccaagctcagcagctcagacttgacagaactatctcattccttgcgaaaggtgagcctgctcattcaacctacaagctcaaaattagaggctgtgcaatctattgtgcttgcaatctttctttttccttaacttgctatggaatgacctttttttaataaaaaggaataaccttatttttctttgttagatagtaactttttacaatgttgcataaccatgcctatggtgatatgtgcagtttgttagcacagtccaaagactactcagagctatattgcaggactgacgaaaagagtagaaaacgaataaagataagtggaattcttgttttcaataattgtaacttataaatgacttgctgtttcaatttcaggttttggaaagaataactgacacaacagttgcaacagaacttgaagtccttattggccttagttcacaaatatgccatgtcgttcctgaagactttgcccgagaactagagcatgatcagaggaaggaaagatttgtgaagaaactagttgaggcactgaatgcaaatgtgaaacctactgtccactgtcccaggatcaggagggtgatagttgagcaagttatatatatgatggaaaacaattctagttatgcgaactgtttcaatgaatgccagatgatggaagcactcatggtggtagaagagacaccttcaaaggttgaaaagtacaggctcttcatgggggatgcaggactaatggaatacagcataccactctctaatcttgtcgccagagcaaaggaagaattaatgcgtcatgtgacatgattggttaagaagcatcacaatttcctttttgaattttagaagcatcagcatcagtactcacaattagcagtttatatgtagatggtactgttttgtaatgctatccatgtaggagatctgctaaattaagagttggtatctaaattaagagcgggaaaatggtattattagcattgtacacaagacgaccacgacatatgtgtaattacgagaataactgcaggcattgtaatgaatttatctactttggcactattaacatttagtcttgtaatgttcaaagaatcaacggcagtggatatttcaggcgattactgttctacctgtcaagggcatcgcagttgtagcatgaattggtatgaattgaaacaatacccaacaccacagggttactcacttgggaactaagcccttaaccagtaccaatcccaagaccaagcaagagaggaaaaaataagttatactccagaaactaatctgtaaaccctaaatctgagcaccaaacgcacgggcgccggcgggagaaggaaggcaggaagagatcaagagatgggagggaggcgagagaaggtaatggcacctggtattaaggaatggaggcgggctggagctctctacaccgtgctgctcctgctgatctgctcgccgccggagcggcgcttgccaaccggcgaagccaccgctaaccccgcatgaggcggtctgaccagcgaggcccattaccccacacatccgtccgggctctcaacaaaaatccaaccatgcgtattgtccaaatatattttcgttttttaagtatataccaatacaaaataaaaaactagaagcaccctactttattaaattttaatataattattcctcattttaactactcaaatataattattctctacttttacaaatttcgacttcatgattacttaaaaattaatttatttcgagataaatatgagaagctaaaaataaacttattatagtacggagtacctactaacggtggtataaacctattactggatttgtatttttagggttttgctaaaataatgtgctttaagattcatgcaaaaagaaaaaatttcaaagccacgcgtggagtggtgttgatcttgtcagtgttatgaataccacatacccaatagtaatcgactaagcacggcgaggcacaccacatactatgttttatacggaatcatacctcatatatagaaggagttccagataaggaaggacggatagagttctatatggaaactataaggactactaagatcgtatccatacttgtctccctagttctacttggacaaagagacatctatgggtataagtacaagccccctaggaggagaggggacgagccacaagaccaagacacaacatatacacaagccaacatgcgccgccggatatcgacatcagagataagcctaaataaacccaatatgatgtctgcggaggtcaacaagagggatctagcgcaatctctaatctcgccgagtgcggattaattctaaggaggaagactaccctgtcgtcgactacgagttagttatccatgccgccaagtcaacgacagctagatatgttatcccaattattgtatttgtgtgattcggatgaataaaggagcaacactggcttcgaccaacaggatgtaggctattacctgtcagataagaggctcgaacctgtataaaaatctttgtatctatctcttttacctcaatctcgcatataccctgatacggatgatccccataccatccaaataccctagtcgtgatattaaacgtcgacagatctcatggctgaaagctacaactaatagtcaaccaagccgcgcaaattcttaaacaagttatatgcgagctatatatgtatgagctacactatagttatttcatagttacactataattacatttgaaatattttaaaggaatttgctgtcgaaagttatatatatttgacgtcgttgacttttttaaatatgtttgaccgttcgtcttattaaaaaaattaagtaattatatattaattcttttcccatcatttgatttattgttaaatatacttatatgtatacatatagttttatatatttcacaaaagtttttgaataaagcgaacggtcaaacatatgctaaaaagtcaacggtatcaaatatttagaaaacggagggaataataaatgaagaaccaaaacgagaaacgtcatgacccatcgtcatcccaggcgtatagccgcgtactgcacaagccttccatattgaaacttcgtcctgaagaggatttcgctttcgatcgaaacctcgtcttgaagatttcgctttgcaacctgcttaagaaacttgcacagttgcatgcacccccatggtgaatatgatcccatgcatcgcagcattctttatcatttcctctccctactgcaaaatggtccacgaagaaacaaaaaaactaacaaggtggtggatatattaatttggtaagatcacacccgacacaacatctttaaaagcaaagcagcatttctaaattagtaaatttctgcaaacagctgagatcccaaaaggcactaatcatctaaatttctaggtaagctactctcaaccattcattgaccgaacatatagaaaccattcgatccacgcttacgtgttgctaaagcatattgttagcgatggtgagaagtcgtcagagcaaagaggaaattaaaggagctattaatttactagtaaatacgaactgtgaagtatagtacacgtcaattgttgttgtgtatacgtgccgtgtgatgatcgatctagttctggagtacactatatatatggcattgtaaaagcagcttggggaaacagcaacaggaaaaggattccaaactattttttcaaacttccaatttttccatcgcatcagaacttttctacacacataaacttccaacttttccgtcgcatcgttccaatttcaaccaaacttccaattttagcgtgaactaaacacaccctgaagcaaaaatggtgagcccaaccacggctgaagctactcggagatggtgcaaggccgccgccgccgccgcatcggcagcaccggaaaagcacctgaaccgcttcgtccgcctcatcgcgttcatagagagggcgggcaacggcatcggcacgctggtattcacttgggcgaccgttgttatactcggcggattttcaacgatggtcaccacgcgtgagtttctgtcggcaacgttcttggctttcctcgaagcaacaaggtcagcaataatcat
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| CDS seq | atgattattgctgaccttgttgcttcgaggaaagccaagaacgttgccgacagaaactcacgcgtggtgaccatcgttgaaaatccgccgagtataacaacggtcgcccaagtgaataccagcgtgccgatgccgttgcccgccctctctatgaacgcgatgaggcggacgaagcggttcaggtgcttttccgaatatgtgtttgatgatggatgttgggcaagaaatgcttggatcaacctgctaatgatcactcggattgaacctatctcctccctgctgttcccattgatggcaaggtttctgaggatctctgctgccagcttcttatgttcttggcttccctcagtgtctcccaagatttctgccagggttataccaatttccccaccagtgtttgagagccttgtcagcaacttcagtgatgaacctttcagtatttttggctgcgtctcgttagtgtaccctataatcttctggatgaggtctcttgctctgctgatttccgcacagttgtcaggatcacattctgcaagtgtctctaggattgacattcccagtacaggaaggagatcatgctctatgaatgtctcctcctttgaagtttttttgcgctttgaaatcaattgccagcaaccaagcatccaggagttaatgtccagaagtgaagatatgttctgcattgacccagggataccaataatttggaggctccttgaaagatcgacgatgacctttgtggcaaacaatctaacttgcgcatcctctggacttgtccagcccaacatgctgatcagtgtattcaatgtctctgtggaagtggtgagtctcaagagcagaagtgccttggtgcgcttcctttttagaaagctgtgcagcatttggatcccatag
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| Protein seq | MIIADLVASRKAKNVADRNSRVVTIVENPPSITTVAQVNTSVPMPLPALSMNAMRRTKRFRCFSEYVFDDGCWARNAWINLLMITRIEPISSLLFPLMARFLRISAASFLCSWLPSVSPKISARVIPISPPVFESLVSNFSDEPFSIFGCVSLVYPIIFWMRSLALLISAQLSGSHSASVSRIDIPSTGRRSCSMNVSSFEVFLRFEINCQQPSIQELMSRSEDMFCIDPGIPIIWRLLERSTMTFVANNLTCASSGLVQPNMLISVFNVSVEVVSLKSRSALVRFLFRKLCSIWIP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0025870 | OsLiXu_07g0025870.02 | Chr07 | 27107056 | 27111992 | - | NAM | ||
| CDS seq | atgacgcacaccatggcctcagccatgcatacaatcagaatcaacctgatcaggcgaggacgcctgaaagctccccttgtccggaagaagaattggagagctagcaacgttgcgcaattgaactcccgtgtggtgagcatcgtcgagaagccaccgaggatgacgacggttgcccatgtgaataccagagtaccgaggccgttgccggccctctctatgaacgcgatgatgcggacgaagcggttcaggtgcttctccggtggctctggcggcgccttgcaccgttgccgagttgctgcgtcgcccgctgggcgcgccatctttcttcaacgactttttttgcagtttgccgcgcggcggctagctcgacctccatgctttcacaataatatagagcgaggattacaaagagagagacagttgactgcacttcacgatcggctgcacgaaaatgctaaattgcccctacttctttctcagatcgattggttcgtcaggccgcatgaaggacgcgacgctggagacgaggaagacggtggtcgggtcgaggccgccggcaacgaggtcattccaccgccgctggggtggccgacgcggctactggctgcgccacttggtcaatctgctcatcacacttggtcatag
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| Protein seq | MTHTMASAMHTIRINLIRRGRLKAPLVRKKNWRASNVAQLNSRVVSIVEKPPRMTTVAHVNTRVPRPLPALSMNAMMRTKRFRCFSGGSGGALHRCRVAASPAGRAIFLQRLFLQFAARRLARPPCFHNNIERGLQRERQLTALHDRLHENAKLPLLLSQIDWFVRPHEGRDAGDEEDGGRVEAAGNEVIPPPLGWPTRLLAAPLGQSAHHTWS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0025870 | OsLiXu_07g0025870.01 | Chr07 | 27109436 | 27114598 | - | NAM | ||
| CDS seq | atgattattgctgaccttgttgcttcgaggaaagccaagaacgttgccgacagaaactcacgcgtggtgaccatcgttgaaaatccgccgagtataacaacggtcgcccaagtgaataccagcgtgccgatgccgttgcccgccctctctatgaacgcgatgaggcggacgaagcggttcaggtgcttttccgaatatgtgtttgatgatggatgttgggcaagaaatgcttggatcaacctgctaatgatcactcggattgaacctatctcctccctgctgttcccattgatggcaaggtttctgaggatctctgctgccagcttcttatgttcttggcttccctcagtgtctcccaagatttctgccagggttataccaatttccccaccagtgtttgagagccttgtcagcaacttcagtgatgaacctttcagtatttttggctgcgtctcgttagtgtaccctataatcttctggatgaggtctcttgctctgctgatttccgcacagttgtcaggatcacattctgcaagtgtctctaggattgacattcccagtacaggaaggagatcatgctctatgaatgtctcctcctttgaagtttttttgcgctttgaaatcaattgccagcaaccaagcatccaggagttaatgtccagaagtgaagatatgttctgcattgacccagggataccaataatttggaggctccttgaaagatcgacgatgacctttgtggcaaacaatctaacttgcgcatcctctggacttgtccagcccaacatgctgatcagtgtattcaatgtctctgtggaagtggtgagtctcaagagcagaagtgccttggtgcgcttcctttttagaaagctgtgcagcatttggatcccatag
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| Protein seq | MIIADLVASRKAKNVADRNSRVVTIVENPPSITTVAQVNTSVPMPLPALSMNAMRRTKRFRCFSEYVFDDGCWARNAWINLLMITRIEPISSLLFPLMARFLRISAASFLCSWLPSVSPKISARVIPISPPVFESLVSNFSDEPFSIFGCVSLVYPIIFWMRSLALLISAQLSGSHSASVSRIDIPSTGRRSCSMNVSSFEVFLRFEINCQQPSIQELMSRSEDMFCIDPGIPIIWRLLERSTMTFVANNLTCASSGLVQPNMLISVFNVSVEVVSLKSRSALVRFLFRKLCSIWIP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0025870 | OsLiXu_07g0025870.03 | Chr07 | 27107070 | 27111992 | - | NAM | ||
| CDS seq | atgacgcacaccatggcctcagccatgcatacaatcagaatcaacctgatcaggcgaggacgcctgaaagctccccttgtccggaagaagaattggagagctagcaacgttgcgcaattgaactcccgtgtggtgagcatcgtcgagaagccaccgaggatgacgacggttgcccatgtgaataccagagtaccgaggccgttgccggccctctctatgaacgcgatgatgcggacgaagcggttcaggtgcttctccggtggctctggcggcgccttgcaccgttgccgagttgctgcgtcgcccgctgggcgcgccatctttcttcaacgactttttttgcagtttgccgcgcggcggctagctcgacctccatgctttcacaataatatagagcgaggattacaaagagagagacagttgactgcacttcacgatcgattggttcgtcaggccgcatga
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| Protein seq | MTHTMASAMHTIRINLIRRGRLKAPLVRKKNWRASNVAQLNSRVVSIVEKPPRMTTVAHVNTRVPRPLPALSMNAMMRTKRFRCFSGGSGGALHRCRVAASPAGRAIFLQRLFLQFAARRLARPPCFHNNIERGLQRERQLTALHDRLVRQAA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 27107322 | 27107875 | - | OsLiXu_07g0025870.02 | OsLiXu_07g0025870.02,OsLiXu_07g0025870.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.123297 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0650300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0650300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0025780 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0025830 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025660 | RBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0025580 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025830 | SBH | 0.000000 | 0.000000 | 2.897397 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0026310 | SBH | 0.000000 | 0.063423 | 0.097304 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025600 | SBH | 0.000000 | 0.074243 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0025820 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025670 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0040040 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025490 | RBH | 0.0 | 0.292960 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025530 | SBH | 0.000000 | 0.000000 | 0.268714 |
