Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0023540 | OGI:07071000 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:25472074-25476530 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acctcatttaatttctattaaaaaaggtttcaaaaagcaggcctttgagattgtttttcttagccatcctatacatattttTctgatgtgtctacttccattacatggcttttacagtggtcattcaataatatcgatgccttgttcacaacagaatctgcgaaatcagttggccgccacattttaccaaattggccagatttgtttcatttctctgacattcacgaaactgaaaaccatagcttccggcctcgaatgcaatcttcaacgatgcaaactgccatctgccaaatctttcctaccgaggaaaaccattgctaccaccagaatatctgaactgtggcatcgcatatcctccttccggacgaggacggtatacagtttgtggcacattgaatggtgcaaatgacgctccaagttgatccagaggatggtggtgtacagtttgtcgcacgttgagtgatgcaaatgatggaaattgattcggtgtgtttcccagataataagcaggtggatgcgaaccagccaatgccgcatttggatgctggaaacccatcctagggtgtgggcatgccgttgatctgccatctgcgtgaggttgcgaggcattgccaacttcacggaatggaggtggcctctggggcctcacgatctcaaagggagactgctgcactccaaccagatatccatgacttgcctgcatatcataacctgaacctgcattcctttctccgaattgagcatggctgccaccagcgagattttgctgggaatcagctttcctttctctcatcctagctctgttggtgctgcgatcacttctatccagccgggcacgacttgtcttcgtgttctgaccaccagcgaattgttttgcggaagacgcttggctctcttcattcctggatctttttgtggggagatcaggattggaggactgcataacacgcttcttgcctttcttgatactgcttccactatcaggccgtcctgcttgagattgatgttttcccttttgcgtcgttttcttgcctttatgccaccagaaggatatgttataaattgaagttggaattcaattagtttggcaaaagatacgtacagtttcaagataattgacttgaaaagtggagagagaaattgctaagagctaatataaaattcattctgaacaaaactcataaacaaaacgatgcatgaaaaacattccaagaaacagaagtgtatctctttaagtttatgatcagctcagaattaagttataattacatttttacaatggcttgtgcaaaactatgctcttctccatgtaaaagtgactaaaaagggcttttaaacgattccctctaagaaacagctgcctctaccatggaatattatagttctcaatgcgaaatgcccaatacatgattacatgtcattataaaatctgtagtatgcgactaaaggtctatcaaacattttatagtatttgtcacatggtgcatgcgacatcatgactgatatgaacctacatatgtaatagcactcagaaaatttagaaggcaactgccattagaaagattctctctcaattgtaatcaggttaaggaaacatgtagtatcttagctttatttaacagggttcttgagtatagaaattactgtttcctgcagcatcaggtctactcaatgcacgaacacgccttgcagcatctcccctgctgtgcttctcatctagagccttcaatctatctgcttcatttagccaaggctaaataataataaaaaagaacttcaatgtaaagctgaaaagtatacaaactcatcctgagatagatataaacacatttatggctgcatataagtaacccatccacagaaaatgataatatcaacaagattttttgaacacatgagaatgacagctaatctgctacagtattgtctagatagcacaagttctaaaatagggatgcgggttggccaacccgccaactcacttataggtcaaataagtggtaatccgtgggttttcacatcgttacccggcttgccgtatctagagatacaagtggatcaacccataaacctatttataggttaaattagtaggtaacccacaagctaacccgcgagttacccactaaattttgcctataagtcggggtccgggctcacaggttggcccgcttgcatccctaaaatctaaaaggtaacatacttaagacaattcaggtaagagctatcctacctgacggaaagtcatcattctgtagagattgcgccctttgacaagtagcagatacaaaggtggtaatttgcctactcctttgctccagaaaacttggatctatcaaattcaacagctaaaggagtcagtagaagctcaagaaaaccaatgctgcagcagtgacatataattattattttcagacaatagcagaaatatattactgaaattaatccttacagtaaaagtgtgctgctgcttctcttttccataactttccttaataacactcccagctacaattcgctttcctatacattttgaatgcctttttccactaacaaagtcagcaaagggaagttctctcattattaatctacgcaaatgctagtgagtacagaagtgcagatttctaccttttctcataaaccttctgcttgaataaaacggtatcacctctacagacatcacctaaagtgagagagataaaggcttgttttattcagacagataacctggataatttcgtatgcagacagataaaggcttgtttccaactgaggtggcacctttacagttaatacaaaaggatgagcgtggatagatcttctctggatccctatctttgaacctaataggaaaacaaagcagaatgttacatgcgtctggctgttctgaagtgttgcaagatcaatgcatttccaggatgaaaggaaaactcttcaatgcataacaatactattacagaacaaaagaatcaggataaatgaaaagaaagaaatggcacagaggaagtggtgttctctacattactgctactccggatcatgggatagataagcataacattactgcataattcgacagagaatcatccaagtaactaacctccaatgcaacactattctttctatgcaagtagccaagtccccagtttggctaaggccattcttctttaaatatgctttgcaatcaaccagcttaatcccatccaaatttcgccccgctacaatgaaaaaaaactgttcattagcttatgttgtaggaatataatactattcaagcaagtagaccatattagTATGTATGATGTTCAACTGCATATTTTTCATTCTGGAAACATAAGGTAAATtatcaaaggatcatatgattgatccatggcagtgaagaatattttgcaaaatagcccatcattgacttttacaaataacccgcaattttaattgctaatgttggcagcaagccattttcttacaaaatagcccccttctgaaccgctattcgctacccgagaattttgtgctacaaataaccccatttggtaggtatagcgatctggatttttacaaaataacctctggtttggacccttcagattttttttttgaattatttgtcccacggttcgaaaatacatctttagaaaacttccttctataccactaaaactattttattgagttaattttgtgaaataatcaatttatctaaatgataagtaaatataattccccataataatgtgctcaatgatctaaaaatcaagcgggcctaagctgattccccacgcaacagtaaacgccaccgtgcgaagccgccactctccccgtcgtctcttcctccggcaagccggtcgccatggcgaagcgatggctccccctcgacgcaaagtcgccaatcctgaatcgaatcaatcaggcaccctcccgccccgcacctcctctcctctgatagccagttcgtccgagtggcatgcgagcacaaatggtggtgcgcgcacgcgcacgcagcgaggaggggatcgaggtgattaccgcggaggagatcggcgatttttctgcaggaggcctcgccccgatccacgcctgattgctccggctcccgctcccgctccgcctccgattccgattccgactcctcctcgctccccgcgccgccgccttcctcgccgtcgctgtcgctgatgtcgatgtagtagtcctcgtcgctggtggattcctcgtcgtcctcctccgacccagactcagatccggcgtcagaatccgacgagatgtcgatcgctgcggcgcgctcctcctcgaccagcaccgccgtcaccgctgcggcggcgcgcctcctcgttacaggcatcgcagtaagggcagcgctccacaggcaccccgccggcggccgctctccctccctcgccgcctcgccctcctccgattgccttccgcctcggaatggaagggcgcctcaaatttcc
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| CDS seq | atgcctgtaacgaggaggcgcgccgccgcagcggtgacggcggtgctggtcgaggaggagcgcgccgcagcgatcgacatctcgtcggattctgacgccggatctgagtctgggtcggaggaggacgacgaggaatccaccagcgacgaggactactacatcgacatcagcgacagcgacggcgaggaaggcggcggcgcggggagcgaggaggagtcggaatcggaatcggaggcggagcgggagcgggagccggagcaatcaggcgtggatcggggcgaggcctcctgcagaaaaatcgccgatctcctccgcgcggggcgaaatttggatgggattaagctggttgattgcaaagcatatttaaagaagaatggccttagccaaactggggacttggctacttgcatagaaagaatagtgttgcattggaggttcaaagatagggatccagagaagatctatccacgctcatccttttgtattaactgtaaaggtgccacctcagttggaaacaagcctttatctgtctgcatacgaaattatccaggtgatgtctgtagaggtgataccgttttattcaagcagaaggtttatgagaaaagtggaaaaaggcattcaaaatgtataggaaagcgaattgtagctgggagtgttattaaggaaagttatggaaaagagaagcagcagcacacttttactccttggctaaatgaagcagatagattgaaggctctagatgagaagcacagcaggggagatgctgcaaggcgtgttcgtgcattgagtagacctgatgctgcaggaaacagcaagaaaacgacgcaaaagggaaaacatcaatctcaagcaggacggcctgatagtggaagcagtatcaagaaaggcaagaagcgtgttatgcagtcctccaatcctgatctccccacaaaaagatccaggaatgaagagagccaagcgtcttccgcaaaacaattcgctggtggtcagaacacgaagacaagtcgtgcccggctggatagaagtgatcgcagcaccaacagagctaggatgagagaaaggaaagctgattcccagcaaaatctcgctggtggcagccatgctcaattcggagaaaggaatgcaggttcaggttatgatatgcaggcaagtcatggatatctggttggagtgcagcagtctccctttgagatcgtgaggccccagaggccacctccattccgtgaagttggcaatgcctcgcaacctcacgcagatggcagatcaacggcatgcccacaccctaggatgggtttccagcatccaaatgcggcattggctggttcgcatccacctgcttattatctgggaaacacaccgaatcaatttccatcatttgcatcactcaacgtgcgacaaactgtacaccaccatcctctggatcaacttggagcgtcatttgcaccattcaatgtgccacaaactgtataccgtcctcgtccggaaggaggatatgcgatgccacagttcagatattctggtggtagcaatggttttcctcggtag
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| Protein seq | MPVTRRRAAAAVTAVLVEEERAAAIDISSDSDAGSESGSEEDDEESTSDEDYYIDISDSDGEEGGGAGSEEESESESEAEREREPEQSGVDRGEASCRKIADLLRAGRNLDGIKLVDCKAYLKKNGLSQTGDLATCIERIVLHWRFKDRDPEKIYPRSSFCINCKGATSVGNKPLSVCIRNYPGDVCRGDTVLFKQKVYEKSGKRHSKCIGKRIVAGSVIKESYGKEKQQHTFTPWLNEADRLKALDEKHSRGDAARRVRALSRPDAAGNSKKTTQKGKHQSQAGRPDSGSSIKKGKKRVMQSSNPDLPTKRSRNEESQASSAKQFAGGQNTKTSRARLDRSDRSTNRARMRERKADSQQNLAGGSHAQFGERNAGSGYDMQASHGYLVGVQQSPFEIVRPQRPPPFREVGNASQPHADGRSTACPHPRMGFQHPNAALAGSHPPAYYLGNTPNQFPSFASLNVRQTVHHHPLDQLGASFAPFNVPQTVYRPRPEGGYAMPQFRYSGGSNGFPR |
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| Function | Zinc finger CCCH domain-containing protein 62 [UniProtKB/Swiss-Prot:Q338N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0023540 | OsLiXu_07g0023540.01 | Chr07 | 25472074 | 25476530 | - | NAM | ||
| CDS seq | atgcctgtaacgaggaggcgcgccgccgcagcggtgacggcggtgctggtcgaggaggagcgcgccgcagcgatcgacatctcgtcggattctgacgccggatctgagtctgggtcggaggaggacgacgaggaatccaccagcgacgaggactactacatcgacatcagcgacagcgacggcgaggaaggcggcggcgcggggagcgaggaggagtcggaatcggaatcggaggcggagcgggagcgggagccggagcaatcaggcgtggatcggggcgaggcctcctgcagaaaaatcgccgatctcctccgcgcggggcgaaatttggatgggattaagctggttgattgcaaagcatatttaaagaagaatggccttagccaaactggggacttggctacttgcatagaaagaatagtgttgcattggaggttcaaagatagggatccagagaagatctatccacgctcatccttttgtattaactgtaaaggtgccacctcagttggaaacaagcctttatctgtctgcatacgaaattatccaggtgatgtctgtagaggtgataccgttttattcaagcagaaggtttatgagaaaagtggaaaaaggcattcaaaatgtataggaaagcgaattgtagctgggagtgttattaaggaaagttatggaaaagagaagcagcagcacacttttactccttggctaaatgaagcagatagattgaaggctctagatgagaagcacagcaggggagatgctgcaaggcgtgttcgtgcattgagtagacctgatgctgcaggaaacagcaagaaaacgacgcaaaagggaaaacatcaatctcaagcaggacggcctgatagtggaagcagtatcaagaaaggcaagaagcgtgttatgcagtcctccaatcctgatctccccacaaaaagatccaggaatgaagagagccaagcgtcttccgcaaaacaattcgctggtggtcagaacacgaagacaagtcgtgcccggctggatagaagtgatcgcagcaccaacagagctaggatgagagaaaggaaagctgattcccagcaaaatctcgctggtggcagccatgctcaattcggagaaaggaatgcaggttcaggttatgatatgcaggcaagtcatggatatctggttggagtgcagcagtctccctttgagatcgtgaggccccagaggccacctccattccgtgaagttggcaatgcctcgcaacctcacgcagatggcagatcaacggcatgcccacaccctaggatgggtttccagcatccaaatgcggcattggctggttcgcatccacctgcttattatctgggaaacacaccgaatcaatttccatcatttgcatcactcaacgtgcgacaaactgtacaccaccatcctctggatcaacttggagcgtcatttgcaccattcaatgtgccacaaactgtataccgtcctcgtccggaaggaggatatgcgatgccacagttcagatattctggtggtagcaatggttttcctcggtag
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| Protein seq | MPVTRRRAAAAVTAVLVEEERAAAIDISSDSDAGSESGSEEDDEESTSDEDYYIDISDSDGEEGGGAGSEEESESESEAEREREPEQSGVDRGEASCRKIADLLRAGRNLDGIKLVDCKAYLKKNGLSQTGDLATCIERIVLHWRFKDRDPEKIYPRSSFCINCKGATSVGNKPLSVCIRNYPGDVCRGDTVLFKQKVYEKSGKRHSKCIGKRIVAGSVIKESYGKEKQQHTFTPWLNEADRLKALDEKHSRGDAARRVRALSRPDAAGNSKKTTQKGKHQSQAGRPDSGSSIKKGKKRVMQSSNPDLPTKRSRNEESQASSAKQFAGGQNTKTSRARLDRSDRSTNRARMRERKADSQQNLAGGSHAQFGERNAGSGYDMQASHGYLVGVQQSPFEIVRPQRPPPFREVGNASQPHADGRSTACPHPRMGFQHPNAALAGSHPPAYYLGNTPNQFPSFASLNVRQTVHHHPLDQLGASFAPFNVPQTVYRPRPEGGYAMPQFRYSGGSNGFPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.752805 | 0.243444 | 0.419356 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0619700 | RBH | 1.270175 | 1.134504 | 1.879089 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g42760 | RBH | 0.873539 | 0.768592 | 0.491984 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0619700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0023560 | RBH | 0.404719 | 2.950804 | 1.871229 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023620 | RBH | 0.587109 | 0.483876 | 2.542181 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0023480 | RBH | 0.609744 | 5.161736 | 2.780457 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0023410 | RBH | 0.105327 | 0.290359 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0023520 | RBH | 3.896624 | 3.429096 | 3.020189 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0419600 | RBH | 2.1196165 | 7.55061 | 1.993217 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0024030 | RBH | 0.144196 | 0.258455 | 0.545717 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0430200 | RBH | 2.834445 | 6.3690435 | 7.182712 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023290 | RBH | 0.041190 | 0.287775 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0023440 | RBH | 0.269462 | 11.199959 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0023340 | RBH | 1.239856 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0009190 | RBH | 0.0 | 0.0 | 0.109156 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0023290 | RBH | 0.376214 | 1.416413 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G023240 | RBH | 0.154663 | 1.324867 | 1.537803 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0023250 | RBH | 0.827134 | 7.781594 | 2.821534 |
