Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0010180 | OGI:07029830 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:10410071-10412687 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atccgatatccattgcaaagaaaaactagtaaacaacgcacacgaaaagaaatcaaagcaatggcttctcgatggatccgtcctgaggtacgcatcagtgttgttctccacttcggcattctcattcttcagctagtttcttgctcctcttgatctatgttgtgccctgtgatcgaattgcgagaacaggtctcgatttgccaggctgcaaaAtttccatcaaaatggatacagtttaaaattttgtatgtcgacaaaatgcgatataaaactccaacatctccatgtcccttttttttcTCctttcatgatgtgtttgatgcgagaacgacctgaaatgttgtaggatcttgatcagacagacgatcaagaggaacgcatgcatgcagtgttggtgtactttttgtgttgttggtccccgatgatgaactgatgatggtgtacaaattaatatgtttgtgtgtgtgcaggtgtacccgctgttcgcgaccaccggcgtggccgtggggatctgcgcgatgcagctggtgcgaaacatcaccaccaacccgGGAAGTGAGGTACGAAATGTTTTGCTCTGAATATTACTAATTCTGCACGATACCATGCAGGTTCAGAGGTTCTCTCTTCTGAATTCCATCGCATTTTTTATTTCCCAAAACAAAACTTTTTCGGCCATCACATCAAATGTTTGGACATATGTATGGAGTATTAAATATGAAAAAAAAAACTAATTACACAGATCGCGTATAAATTGCGAGACGAATCTTTTAATCCTAATTGCGTCATTATTTGATAATGTGATGTTACAGTAAACATTTGCTAATAATAGATTAATTAGGCTTAATAATCCGTCTCGCAGTTTCCTGTGGAATCTGTAATTTGTTTTGTTATTAGACTACGTTTAATACTTCAAATGtgtgtGTctgtatatccgatgtgacaatcaaatccaaaaagtttccccatctaaataaggtctatgctgttgttcgagtggcttcagttgcatgaatattactactaattcttcgaaaattctcagctcatatttggccttgaatctatttttgttaaaAtctctgccccatttatcaccacagatgacccgtgtcgaataaaaagttaccgttgattttagacaaaattggccgatgaaaaagatcgaccacaagccaacaagacggtagcgatagaatcatattcagagcatggtaccatgagcaatgtatattaaaaaaagttcccgtctagaaaatcaatcgaaaatgataaatattcaaactacctgggggtgtcctgcaacaaattaagaaccaagatttccaatgtcctgtagcagaacacatttaAtttcacctgtagccagaacatcattcaatttcacctgtagccagaatatatcatttaatttcacccgtatctgaatatcattaaatttctgaatatcatttaatttccacatatatgctacagctgtgaccaatatcaaacaattaaagctcaatctgcagtagccaaatctcctttgactaaccggcAcacctttcctttgttttccccataataaacttctaaattatctggttgGcttctggactaaaataaaagatatatatatcttagaaAtattgaccagctataccaataaagatggcgcgatgaaaaggccagaccaaaaaaaataagttttttgaaggggtTattttcatatttgaacttcaaaaAtagtttTaaccaacaaacaaaaccctatcttttggatggtttcactttcagaagtaaaaaaaaaaagcataacatatatatcttgtggatggttggaacctagtagaaaaaAccggaccggatcaacggtacgactggaaaaaaccataaccagaggtctttggacccggattgaaccggccggtttTTGCACTAAACCGGATGTTAAACCGCCTTGGTCAGACCGGCCACCGGGCCAAGAATATAAATGGGCCACACTAAGGCCCACTGTTTTTTTCCTCAAAAATCAAAGAAAGGGCTGGTGGCATGGGATTTGAACGTGGGTCTGTGTGTTGAGAGCACTTGGCTCTAGCCATCCGGTCATTCACCACTTTGAGTTATACAGAAAATATACAGCCTTTATATATTTATTGAACCGCGGTTGAACCTGCGGTTTTCCGGTCGGACCATCGGACCGGTGAACcCgaggggttgtccgggtccctctccggtccggttttttacactatgtttggaacagggtgacgaaggagaacagggcggctggcgtgctggagaacttcgacgaggggaagaggtactcccagcatggcgtgaggaggttctggctctccaagcgccgcgactacatgcaggccctggacaaccccaccaacccctcaaccaaaaaatagacgcaaaagtcatacttattcgatgggtacatatatatatatcgatttgattctcggcttcaaaatgcctatatataaatgaatgaatcgacaataagttttcaacatggggaatatccatgttaggacttgctactttacatatttgtccatatatctgtctgtttctctaggaatgatcatttccactgtaattccttttatttcCAaaaggt
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| CDS seq | atggcttctcgatggatccgtcctgaggtgtacccgctgttcgcgaccaccggcgtggccgtggggatctgcgcgatgcagctggtgcgaaacatcaccaccaacccgGGAAGTGAGcatggcgtgaggaggttctggctctccaagcgccgcgactacatgcaggccctggacaaccccaccaacccctcaaccaaaaaatag |
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| Protein seq | MASRWIRPEVYPLFATTGVAVGICAMQLVRNITTNPGSEHGVRRFWLSKRRDYMQALDNPTNPSTKK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0010180 | OsLiXu_07g0010180.01 | Chr07 | 10410131 | 10412472 | + | NAM | ||
| CDS seq | atggcttctcgatggatccgtcctgaggtgtacccgctgttcgcgaccaccggcgtggccgtggggatctgcgcgatgcagctggtgcgaaacatcaccaccaacccgGGAAGTGAGcatggcgtgaggaggttctggctctccaagcgccgcgactacatgcaggccctggacaaccccaccaacccctcaaccaaaaaatag
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| Protein seq | MASRWIRPEVYPLFATTGVAVGICAMQLVRNITTNPGSEHGVRRFWLSKRRDYMQALDNPTNPSTKK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0010180 | OsLiXu_07g0010180.02 | Chr07 | 10410071 | 10412687 | + | IsoSeq | ||
| CDS seq | atgggtacatatatatatatcgatttgattctcggcttcaaaatgcctatatat |
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| Protein seq | MGTYIYIDLILGFKMPIY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 10410630 | 10412386 | + | OsLiXu_07g0010180.02 | OsLiXu_07g0010180.02,OsLiXu_07g0010180.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.641965 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0274400 | RBH | 0.0 | 0.0 | 16.742657 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g17310 | RBH | 0.0 | 0.0 | 4.309886 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0274400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0010140 | SBH | 0.0 | 50.271160 | 12.935132 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0010280 | SBH | 0.212691 | 13.854677 | 6.803816 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0010080 | SBH | 0.504794 | 88.234024 | 34.952312 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0009860 | SBH | 0.052249 | 1.477341 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0010170 | SBH | 0.000000 | 57.919487 | 29.775061 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0183400 | SBH | 1.3906325 | 9.017098 | 0.3590695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0010620 | SBH | 0.000000 | 4.517937 | 6.028810 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0180200 | SBH | 4.153999 | 8.4865345 | 0.3244565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0010100 | SBH | 0.603395 | 0.513228 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0010170 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0010100 | SBH | 5.681009 | 22.432806 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0010080 | SBH | 0.050308 | 7.451454 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G010050 | SBH | 0.0 | 11.316192 | 5.549485 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0009860 | SBH | 0.0 | 19.679884 | 8.353792 |
