Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0007910 | OGI:07019900 | 13/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:7010664-7013714 | ||||||||
| Gene Symbol | SMCP1, OsSMCP1, - | ||||||||||
| DNA seq | ctacgagcgcaggtggcagcgggatcgggggtggcagggagcggcgaggTTGGGGGTGGCGGTGAGGAATGGGGAGATGCGGCGCGCCGGCCGACAAAGCGGTGGTGGGCGGTGAGGTTGGGGGTGAGAGCCGAGGATGGGAGTGGCGGTGGGGAAAGGTGGCGCACAGGCCGGCAGAGTGGTGGTGAGCGGCAGCGGCGTCGCCGCGCCCCTTCTCTCGCCTATTATGTTTCCTCTCTCACGATTCAACAAGTTGACCTAGGGATATAATCATCTGAGAAAATGTGTAATTTACTAAAAAAAAATGAAATACCATCGACAAACACCCTAATCCTAAAAATGCCATTGACAAAGGCAACTTTCTATAAATACCATTGCACAAGTCTCTTTCTCCCAAAAATACCATTACCGTCAACTCCACACCATTACAACCGTTAATTTTTTTATAGTGACCATTTTGCCCACAGTGCAAAATATACCCAaAttttcactgtcaaagaaaaagagagatgaaacaaaatttatggcgatggccgccgaggtaagcgtcccagaggtggttggcgacgttcttggccgacctgggcatggggagggagtactggtcaccttcaccaccgatggagaggagcacggtgacattcttggcgtgcttgtagtgcttgatgtcggcgccgacgctggcgacggggtggccggagaggtcggcccagtagcggccatggccgaagacgctgaggaaggagatgatgacaatgttgtggaagccggTgtcgcaaacctctcggagagagccctcgtccttgttccacgcaccatttgttcaagaggatgaggagcactataacaacaaatgagagcagtagacatttttaatttagttatgtgtcgatcgttatctgcaccgcagacattttttgttgactaaagacaaatgttgtgtacAcgtaagtatacagaagttgcttgcaatgacaaaaccgaaagatgtctcctgatgaacaaatggttgtctagggataagattgtcttttcatATAActtaacggagagatgttttttttTggggttTaacggagagatgttaatagcagtttgacggtgatagtatttttaagagaaagagcCTtgtacaacgGtatttctaagaagttatctttgtcgatgatatttctcggattagtatgcttatcgatgaaattttatggattttcttttttataatggtattctagcgaagcgatgcttataccatgctagaaatgccattttctaattcacgaggctccaaccgcgagaaaggcgagacagaatgaatcCtcgccggcgacgaggcgccgacacctcccTccggcgactgggtctccgacctcgtcgccggtggccggacgggGcagcctcgccgcacggggagccccatcacctccgactccgtctcggagtcggattcccgccctccttatgggaaaaagaaatatcaattaggaaggtttctttctggtgtagttTagttgttagcaacagccctTgaactgaaaccatggttagaattTggaagattaatggtgtagtctagtgtcaacaacgcttcCttgtgctgctttaatgagcttctgcatcacaAttgctacttctgCtactagtcattgtgtgattaccttttgtcttgcaagtttctacactttcgtgttttgataagccttctatccaaacttcaatcttgtttttgtaatgcatatgatcctccacatataaggatcaaatagtatattctattgtcatctgctctgcaagtcttgaactttggtttttatcatactgcaaaacacccCtaatagtactttctgcagttacttttTgtcacCTgttctgctagtattactttctgcagttaggatgatttctgttgtactgtagttgttagcaacagtctgGAactgaaaccttggttagctagctgtgaaagtgtctcagccaattttCTCtcctTTcttaatgaaacaacagagttcctgctttagtataaaaaaatacccaaaaaaaatggttagaattaggaagatttccaatgtagtgtagtgtccacaatgttcttcatgctgcttcaaaatcgctacttttactacagtcattatgtgattaccttttgtcttgcaagtttctgcacttaagtaggaagatttctgatgatattagtcattagaatctagttctattacatatatcaatgtcggaatagcatgtgccatgtttgtgtTcatatgctcCtacacatatagatcaaattgtatattatactatcatctgttctgcaagtcttgaactttggttttTatcatagagcaaaacaccccaataatttcCttttgggaaaacggttgagtgatcatgaggtcgagagttcgagcctctgtcaccccaaAtattgagtgatgaggaaatgctcctgtgacaatcaggttcgtcacattcatctgaccatcagatattaagagctagtctgaactcaattaacttgaatcttctttttgtaatgcatatactgtactccacacatgtcgatcaaattgtatattctattttcatctgtgctgcaagtcttaaactttggtttttatcatagtgaaaataccccaataatttccttctgggaaaacctaactgccaactagatgcactagtctaaatatacagttaagggctggatatcaccattgacttggtctcttggtTgatttatTgctctgatgactaccaattcaggtcgcattatttTacacttgtgcctgccccCacatatttattggtcaatttagttggctccaaaAgggtataaaatactagcagttactctaacatagttctgtgtttTgcagtataaatccaggcacaccaagcggacacaaatatatagaatagatcatgacttttcaccatatcattcagtatgaatatgtaactagtaataaaaatgttattgatttgaatgttttcaatcaccatctatatttTacctatctcagtaaacttcttagttgtatttgaccccat
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| CDS seq | atggggtcaaatacaactaagaagtttactgagataggagggcgggaatccgactccgagacggagtcggaggtgatggggctccccgtgcggcgaggctgCcccgtccggccaccggcgacgaggtcggagacccagtcgccggAgggaggtgtcggcgcctctgctcctcatcctcttgaacaaatggacgagggctctctccgagaggtttgcgacAccggcttccacaacattgtcatcatctccttcctcagcgtcttcggccatggccgctactgggccgacctctccggccaccccgtcgccagcgtcggcgccgacatcaagcactacaagcacgccaagaatgtcaccgtgctcctctccatcggtggtgaaggtgaccagtactccctccccatgcccagGGGCGCGGCGACGCCGCTGCCGCTCACCACCACTCTGCCGGCCTGTGCGCCACCTTTCCCCACCGCCACTCCCATCCTCGGCTCTCACCCCCAACCTCACCGCCCACCACCGCTTTGTCGGCCGGCGCGCCGCATCTCCCCATTCCTCACCGCCACCCCCAAcctcgccgctccctgccacccccgatcccgctgccacctgcgctcgtag
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| Protein seq | MGSNTTKKFTEIGGRESDSETESEVMGLPVRRGCPVRPPATRSETQSPEGGVGASAPHPLEQMDEGSLREVCDTGFHNIVIISFLSVFGHGRYWADLSGHPVASVGADIKHYKHAKNVTVLLSIGGEGDQYSLPMPRGAATPLPLTTTLPACAPPFPTATPILGSHPQPHRPPPLCRPARRISPFLTATPNLAAPCHPRSRCHLRS |
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| Function | Xylanase inhibitor protein 1 [UniProtKB/Swiss-Prot:Q7GCM7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0007910 | OsLiXu_07g0007910.01 | Chr07 | 7010664 | 7013714 | - | NAM | ||
| CDS seq | atggggtcaaatacaactaagaagtttactgagataggagggcgggaatccgactccgagacggagtcggaggtgatggggctccccgtgcggcgaggctgCcccgtccggccaccggcgacgaggtcggagacccagtcgccggAgggaggtgtcggcgcctctgctcctcatcctcttgaacaaatggacgagggctctctccgagaggtttgcgacAccggcttccacaacattgtcatcatctccttcctcagcgtcttcggccatggccgctactgggccgacctctccggccaccccgtcgccagcgtcggcgccgacatcaagcactacaagcacgccaagaatgtcaccgtgctcctctccatcggtggtgaaggtgaccagtactccctccccatgcccagGGGCGCGGCGACGCCGCTGCCGCTCACCACCACTCTGCCGGCCTGTGCGCCACCTTTCCCCACCGCCACTCCCATCCTCGGCTCTCACCCCCAACCTCACCGCCCACCACCGCTTTGTCGGCCGGCGCGCCGCATCTCCCCATTCCTCACCGCCACCCCCAAcctcgccgctccctgccacccccgatcccgctgccacctgcgctcgtag
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| Protein seq | MGSNTTKKFTEIGGRESDSETESEVMGLPVRRGCPVRPPATRSETQSPEGGVGASAPHPLEQMDEGSLREVCDTGFHNIVIISFLSVFGHGRYWADLSGHPVASVGADIKHYKHAKNVTVLLSIGGEGDQYSLPMPRGAATPLPLTTTLPACAPPFPTATPILGSHPQPHRPPPLCRPARRISPFLTATPNLAAPCHPRSRCHLRS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0007850 | RBH | 0.0 | 0.0 | 2.068180 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0007840 | RBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0007710 | RBH | 0.000000 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0007650 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0007680 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0008170 | RBH | 0.0 | 0.0 | 0.375734 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0007640 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0007650 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0007660 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0007720 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G007790 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0007600 | RBH | 0.0 | 0.0 | 0.0 |
