Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0006830 | OGI:07016190 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:5488488-5493448 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcgcgacttcctccgccacgccgacgcgcgaaccccgcgggccttcgtccagctcctcgccgcccagccgccgcgcccctccgccgccgccgccgaccagtgccacgcggccgcaaccaagctcggcttcctcgcctccaacctcttcgccaccaccgcgctcctcgccttctactgccgatcccgccgcctccccgaggcacagcacctgttcgaccaaatgcccgcaaggaccgccgtcacctggaacacgctcatccacggccacgcgcggtcggccgcgcccggcctcgccgtggcggccttcgcgcgcatggcgcgcgccggcgtctcccccaccgcgtcgtccgtgtccagcgtcctggtcgcctgcgtcaggctggaggatgctgctgctggagcaacgctgcactccgttggcctcatgcatggcttctgtgcttctgtcgtcgtcggcactgccttggtggacatgtacgccaaatgccatcatctgggcgccgcgcagcaggtgtttcgggagatggaagaaaagaacgtggccactttcacggcgctcgtggcagggttcgttctaagcagaaggcctcatgacgccatgctgttggtcagggagatggaacgctctggtgtggcaccaaacttgatgacatacagcagccttctcagctcattcgcgagcccggaggacatagatcatgggaagcaagttcattgcgcggtgcttaagaagggcttggagcacgatcagtttgttctgtctgctcttgtgaccatgtactccaagtgcggcattttggaagattttgtcaAggtgcagatgtctgttTCatgtcaagatcaggtatcattcaattccgtgatctctgggctctcCtgtctgggaagaggtaaagaggcgtttcaacacttcttgGaaatgagaaggcacggcactgatatggatgtGttcacctttgccagcgtattgaaggctataggtagctcatcctcattgctagagggaaggcaggttcatactcttattctgaagattggatatgattctgttgtggatgtccagaacagcctgatttccatgtatgccagacatggtgcaataggggaatccaatggcgtcttcatttcaatggaagcacctaatttggtttcttggaattcactaatgtcaggatgtgctcaacatggccatggaaaggaggtagttgagatgtttgaacaaatgaggaggctacatgttcagccagaccacataaccttcttgtcggtccttacagcttgcagccatgttggcttggtagataaagggctcgagtatttcaacttgatgaaagataaaggGtatcttgtgggagcaaggacagagcactatgcttgtatggttgatcttcttggtcgagcaggctatctcaatgaagctgaatacttgattaatggcatgcctataaaacctggtgcttcagtatacagagctctgctcagtgcctgccagattcatgggaaccttgagattgtaatccgggtgtccaagcgcctaattgagctaaatcctcatgactcatctgttcatgttcagttatcaaatgcctttgctggtgatggccgttggggtaatgctgctgagatcagggaggccatgtcaggtaaaggaatagtgaaggagccatcctggagtcgtatcgaggaccagatgcaacatagttaataagcagcctgtgcttacaagatgcatgccactgtcttggttgctacctagaactgaattatagactgaagctctgagggcgatgcttactgaacgaagcaagctagaaatatgtgtaaaaaaaggtatgccaaagttagtgatagatttgactacctgaacacaaaattttggaggttcaaacagttaaacttccttccacttcagtatgagcctcattgtgtttatcattagtgagtaaagcagcaccagattggataattctggtgttataacgatgagttctactggaagcaaGAttacttatcgtcatataaccgGagcctacattgacaaacgactgctgaagatgggagggatgagcttctggatcttgtatactgctgagttgttttatcactgtatttattgcactttgttttatggtgtgttatccttatgtcaaggtatcatgggacttatctcggtgaggatgttgctgttaaagttctaagatctgagcatttgaataagaatgtttggaatgagttcacacaggaagtatatattctaaggtattTaacattaaaataaggtGttctgttatatactccctccgtttcatattataagacgttctagcattgtctacattcatatatatgttatgtaacatatatatgaatgtagacaatgctagaacgtcttataatatgaaacggaggaagtaattcttttttagcatttaccatcgcgaataaattgtttaagcatatccaAttcttagccattagcgcattactgttcttagaataagaatgtctgaaattgccatgttcatgcaagtaccAataactaaatatttatgccttgccttgattcagcatactaatgttgtgcgattcattggtgcgtgcacaaaaccaccacaattttgcataattgctggtaagatttatgacatcaactgGTtctcactggggaatttgcaaagaatagtttgttcctaaaaGAGAAAGCATGTGCTGAATAATTTTTACACAATACTAAATTTCATAATATTGGTAAGATGCTAATTTTTAATTCCATATAATTATGCTTGTTATGAGACAAAGAGCGGGTTCTTAATTTATATCTTGGGGACTGGAAGATTCCTACTAATGCTCATCATCTACTTTTATATATTTCAGAATACATGTCTGGAGGAAGCCTATATGACTTTTTGCACAAGCAGCATAATGTCTTGGACCTTCCAACTCTGCTGAAGTTTGCAGTTGATCTATGCAGAGGGATGTGTTACTTGCATCAGATGGGTATTATCCATAGAGATTTAAAGAGTGCAAACCTTCTAATGGACAAAGATCATGTACGTAGCCTATAATCTTCAACATTTTATTGATGAACATATGAGGGGGAAAAAAGACAAGAAAGTATAGTGTATGCAAGTGGGCAAATGGTACCTGTTGGAATACAATCATGCTTCATttTgtgtttttgtatgtgcaggagccatctgctttgcacttaagagaaaatatctatgaactaataaataacttcattattatttttctaggttgtgaaagtggcagattttggtgtagctcattttcaggatcaaggaggtaacatgacagctgaaactggaacatacagatggatggcaccagagatacaactctgttgctggagcaaagtgattctgtttcaaatgtgcctaatattgttactgtttttgaagtctcgaaaagaaaacttgattgacggttatcacaataatatattctaccgctaaagtgaatagttcagatttgtttgttgtttcaaggaaatttccctataggtataccccctcccctcctcctccTCCaatccctttccccccttaagcttttaatggaagtccacctagcccttgaattttaaaggttagtatgtaacccccaaactttgcaataccatctttaaacaactgccccctcccctaaagttgtttTgtatggtggttttgcctatacggaaacttgaacaaacggttttgtccaataggagatggtaagtggagattttgatctgtatgttacagcatttacgtgacatgggcaaacccatccaatgtgtTccacttagacaaaaaccactttaggaggttatatgaacgtattgtaaagctcagggttttagatgctttgtcttaaggttcaaggtgctagacaatactttttCtttatttcaatgatctgaatgttctatagtttgcatggacattctatagttacctagtttttattgtctagtaaaggtacaagaatattatattcCtggtaaatatatatttgatgcggtgttgctaggtcataaatcatcaaccctacgataacaaagctgatgtgttcagttttgctattgtgctttgggagctcataacgtccaaggtacactattttctgtgactataggctcacaattatctacatTgtgcatTTattagtgtttgctaaggcttgtcaaattttcgtttctggtattttcagatcccttataataccatgacccctctccaagcagctgtaagtgtgtagtatatgcaggtttcttctattcaaataatatgctgtcagttattacttgttacagttgtaccataacacgcacattgtaaaatgcactaagcatgacattttacaggtatacaagggattgcgcccagggctcccagaaaatgcacattcccagctattacctccgtttcaggttataagactttctagtattgcccacattcatatagatgttaatgaatctaggtacacatatatgtctagattcattaacatatactcccttcgtcctaaaatataacaacttttagccctcaggatttgtcccaaatataacaacttatccaccaacattctcttcccacccaatcacaaccctccaccatttattttccCacctacctccactactcattcaatcacaaccctccaccattcacttctacctactttcttaataaccgtgtccaactctaaaacttatattatgggatgaagggagtatatgaatgtgggcaatgctagaaagtcttataatatgaaacggaggaagtattagacttgatgcggagatgttgggatggcattccatccaaccgacctgctttctcagatatattagccgaactagaggatcttcttgcacctgttcaggaagatcccttggcccgaacaaccatgaacgaagcaagtttagctagtcccatgtcctaa
More
|
||||||||||
| CDS seq | atgcgcgacttcctccgccacgccgacgcgcgaaccccgcgggccttcgtccagctcctcgccgcccagccgccgcgcccctccgccgccgccgccgaccagtgccacgcggccgcaaccaagctcggcttcctcgcctccaacctcttcgccaccaccgcgctcctcgccttctactgccgatcccgccgcctccccgaggcacagcacctgttcgaccaaatgcccgcaaggaccgccgtcacctggaacacgctcatccacggccacgcgcggtcggccgcgcccggcctcgccgtggcggccttcgcgcgcatggcgcgcgccggcgtctcccccaccgcgtcgtccgtgtccagcgtcctggtcgcctgcgtcaggctggaggatgctgctgctggagcaacgctgcactccgttggcctcatgcatggcttctgtgcttctgtcgtcgtcggcactgccttggtggacatgtacgccaaatgccatcatctgggcgccgcgcagcaggtgtttcgggagatggaagaaaagaacgtggccactttcacggcgctcgtggcagggttcgttctaagcagaaggcctcatgacgccatgctgttggtcagggagatggaacgctctggtgtggcaccaaacttgatgacatacagcagccttctcagctcattcgcgagcccggaggacatagatcatgggaagcaagttcattgcgcggtgcttaagaagggcttggagcacgatcagtttgttctgtctgctcttgtgaccatgtactccaagtgcggcattttggaagattttgtcaAggtgcagatgtctgttTCatgtcaagatcaggtatcattcaattccgtgatctctgggctctcCtgtctgggaagaggtaaagaggcgtttcaacacttcttgGaaatgagaaggcacggcactgatatggatgtGttcacctttgccagcgtattgaaggctataggtagctcatcctcattgctagagggaaggcaggttcatactcttattctgaagattggatatgattctgttgtggatgtccagaacagcctgatttccatgtatgccagacatggtgcaataggggaatccaatggcgtcttcatttcaatggaagcacctaatttggtttcttggaattcactaatgtcaggatgtgctcaacatggccatggaaaggaggtagttgagatgtttgaacaaatgaggaggctacatgttcagccagaccacataaccttcttgtcggtccttacagcttgcagccatgttggcttggtagataaagggctcgagtatttcaacttgatgaaagataaaggGtatcttgtgggagcaaggacagagcactatgcttgtatggttgatcttcttggtcgagcaggctatctcaatgaagctgaatacttgattaatggcatgcctataaaacctggtgcttcagtatacagagctctgctcagtgcctgccagattcatgggaaccttgagattgtaatccgggtgtccaagcgcctaattgagctaaatcctcatgactcatctgttcatgttcagttatcaaatgcctttgctggtgatggccgttggggtaatgctgctgagatcagggaggccatgtcagAATACATGTCTGGAGGAAGCCTATATGACTTTTTGCACAAGCAGCATAATGTCTTGGACCTTCCAACTCTGCTGAAGTTTGCAGTTGATCTATGCAGAGGGATGTGTTACTTGCATCAGATGGGTATTATCCATAGAGATTTAAAGAGTGCAAACCTTCTAATGGACAAAGATCATgttgtgaaagtggcagattttggtgtagctcattttcaggatcaaggaggtaacatgacagctgaaactggaacatacagatggatggcaccagagatacaactctgttgctggagcaaaatcccttataataccatgacccctctccaagcagctgaagatcccttggcccgaacaaccatgaacgaagcaagtttagctagtcccatgtcctaa
More
|
||||||||||
| Protein seq | MRDFLRHADARTPRAFVQLLAAQPPRPSAAAADQCHAAATKLGFLASNLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVSPTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNPHDSSVHVQLSNAFAGDGRWGNAAEIREAMSEYMSGGSLYDFLHKQHNVLDLPTLLKFAVDLCRGMCYLHQMGIIHRDLKSANLLMDKDHVVKVADFGVAHFQDQGGNMTAETGTYRWMAPEIQLCCWSKIPYNTMTPLQAAEDPLARTTMNEASLASPMS |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At1g11290, chloroplastic [UniProtKB/Swiss-Prot:Q3E6Q1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0006830 | OsLiXu_07g0006830.01 | Chr07 | 5488488 | 5493448 | + | NAM | ||
| CDS seq | atgcgcgacttcctccgccacgccgacgcgcgaaccccgcgggccttcgtccagctcctcgccgcccagccgccgcgcccctccgccgccgccgccgaccagtgccacgcggccgcaaccaagctcggcttcctcgcctccaacctcttcgccaccaccgcgctcctcgccttctactgccgatcccgccgcctccccgaggcacagcacctgttcgaccaaatgcccgcaaggaccgccgtcacctggaacacgctcatccacggccacgcgcggtcggccgcgcccggcctcgccgtggcggccttcgcgcgcatggcgcgcgccggcgtctcccccaccgcgtcgtccgtgtccagcgtcctggtcgcctgcgtcaggctggaggatgctgctgctggagcaacgctgcactccgttggcctcatgcatggcttctgtgcttctgtcgtcgtcggcactgccttggtggacatgtacgccaaatgccatcatctgggcgccgcgcagcaggtgtttcgggagatggaagaaaagaacgtggccactttcacggcgctcgtggcagggttcgttctaagcagaaggcctcatgacgccatgctgttggtcagggagatggaacgctctggtgtggcaccaaacttgatgacatacagcagccttctcagctcattcgcgagcccggaggacatagatcatgggaagcaagttcattgcgcggtgcttaagaagggcttggagcacgatcagtttgttctgtctgctcttgtgaccatgtactccaagtgcggcattttggaagattttgtcaAggtgcagatgtctgttTCatgtcaagatcaggtatcattcaattccgtgatctctgggctctcCtgtctgggaagaggtaaagaggcgtttcaacacttcttgGaaatgagaaggcacggcactgatatggatgtGttcacctttgccagcgtattgaaggctataggtagctcatcctcattgctagagggaaggcaggttcatactcttattctgaagattggatatgattctgttgtggatgtccagaacagcctgatttccatgtatgccagacatggtgcaataggggaatccaatggcgtcttcatttcaatggaagcacctaatttggtttcttggaattcactaatgtcaggatgtgctcaacatggccatggaaaggaggtagttgagatgtttgaacaaatgaggaggctacatgttcagccagaccacataaccttcttgtcggtccttacagcttgcagccatgttggcttggtagataaagggctcgagtatttcaacttgatgaaagataaaggGtatcttgtgggagcaaggacagagcactatgcttgtatggttgatcttcttggtcgagcaggctatctcaatgaagctgaatacttgattaatggcatgcctataaaacctggtgcttcagtatacagagctctgctcagtgcctgccagattcatgggaaccttgagattgtaatccgggtgtccaagcgcctaattgagctaaatcctcatgactcatctgttcatgttcagttatcaaatgcctttgctggtgatggccgttggggtaatgctgctgagatcagggaggccatgtcagAATACATGTCTGGAGGAAGCCTATATGACTTTTTGCACAAGCAGCATAATGTCTTGGACCTTCCAACTCTGCTGAAGTTTGCAGTTGATCTATGCAGAGGGATGTGTTACTTGCATCAGATGGGTATTATCCATAGAGATTTAAAGAGTGCAAACCTTCTAATGGACAAAGATCATgttgtgaaagtggcagattttggtgtagctcattttcaggatcaaggaggtaacatgacagctgaaactggaacatacagatggatggcaccagagatacaactctgttgctggagcaaaatcccttataataccatgacccctctccaagcagctgaagatcccttggcccgaacaaccatgaacgaagcaagtttagctagtcccatgtcctaa
More
|
|||||||
| Protein seq | MRDFLRHADARTPRAFVQLLAAQPPRPSAAAADQCHAAATKLGFLASNLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARAGVSPTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLGAAQQVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDQFVLSALVTMYSKCGILEDFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNPHDSSVHVQLSNAFAGDGRWGNAAEIREAMSEYMSGGSLYDFLHKQHNVLDLPTLLKFAVDLCRGMCYLHQMGIIHRDLKSANLLMDKDHVVKVADFGVAHFQDQGGNMTAETGTYRWMAPEIQLCCWSKIPYNTMTPLQAAEDPLARTTMNEASLASPMS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.123448 | 0.117195 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0203900 | RBH | 1.379576 | 0.880054 | 0.776694 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g10400 | RBH | 0.664086 | 0.518722 | 0.158937 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0203900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0006680 | RBH | 0.000000 | 2.576465 | 1.136097 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0006650 | RBH | 0.0 | 0.0 | 0.115501 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0006550 | RBH | 0.204133 | 0.0 | 2.078178 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0006470 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0006680 | RBH | 0.0 | 1.692692 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0095300 | RBH | 0.7205015 | 1.8766285 | 0.4271075 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0007170 | RBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0096800 | RBH | 1.016309 | 2.4173365 | 6.303514 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0006600 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0006620 | RBH | 0.179087 | 0.980877 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0006680 | RBH | 0.779841 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0038520 | RBH | 2.385359 | 0.893574 | 1.142565 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0006610 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G006760 | RBH | 0.000000 | 1.006343 | 0.322503 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0006610 | RBH | 0.000000 | 0.0 | 0.0 |
